These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1100 fasta sequence [GGCATGCGCGAGCGCGACCCCTCCCCCTCGAACCGCCGCGACCTTCTCGATGCTTCCCAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT-CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT-CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAGACAAGACACAAATTGATATTATTCAAGGA-CATGATG-TCTTTTTAAAAAAAAAAAATTGCGCTGTTAAAAA] [+] EMBL AK069405 [GGCATGCGCGAGCGCGACCCCTCCCCCTCGAACCGCCGCGACCTTCTCGATGCTTCCCAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAGACAAGACACAAATTGATATTATTCAAGGA CATGATG TCT ] [+] EMBL AK104151 [ CGCGACCCCTCCCCCTCGAACCGCCGCGACCTTCTCGATGCTTCCCAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAGACAAGACACAAATTGATATTATTCAAGGA CATGATG TCT ] [+] EMBL AK104209 [ CGCGACCCCTCCCCCTCGAACCGCCGCGACCTTCTCGATGCTTCCCAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCA ] [+] EMBL CF291134 [ GCGACCTTCTCGATGCTTCCCAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCC ] [+] EMBL C99359 [ CATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAA TCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGANGAGCAATCTCATCTCGGNTTCCTTGTGTA ] [+] EMBL BP184480 [ GTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGAC GGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGC ] [-] EMBL CF334893 [ TGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAGGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAAaaaaa ] [+] EMBL C99360 [ ATGAAGATGGAATGTANCCTGACCAGGTGGATTGGATTGCCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAGACAAGACACAAATTGATATTATTCAAGGA CATGATG TCTTTTTAAAAAAAAAAAA ] [-] EMBL CF334802 [ AATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAAT CCTAACCATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAGGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAAaaaaa ] [-] EMBL CF291133 [ ATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCT CCCAACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAGACAAGACACAAATTGATATTATTCAAGGACCATGATG TCTTTTTAAAAAAA ] [-] EMBL CF336730 [ ATACTGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCTCCCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGTTCACCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAGACAAGACACAAACTGATATTATTCAAGGA CATGATGTTCTTTTTAAAATGAAATCCTTGCGCTGTTAAAAA] consensusID : consensus_14882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1090 fasta sequence [TTCGCCCTTGGACACTGACATGACTGAAGGAGTAGAAAAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAA-GGTGGGA-GGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCA-GGTGGA-TTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAA-TATACT-GGGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGCCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCTCCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGNTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGNGTATTGGATATTTTGGATGTATATCTTCGTGGTTAGTGAGTTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGNTTCCTGNAAACTNCTATTGNAATCAGNGNATTGGTCAGACAAGACACAAATTGATNTTATTCAAGGACATGATGNCCTTTTTAAAANGAAAAAAAAAAAAAAAAAAAAGCGGNCGG] [+] EMBL CF334801 [TTCGCCCTTGGACACTGACATGACTGAAGGAGTAGAAAAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAA GGTGGGA GGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCA GGTGGA TTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAA ] [+] EMBL CF334892 [ TCGCCCTTGGACACTGACATGACTGAAGGAGTAGAAAAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAA GGTGGGA GGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGGTGGA TTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAA TATACT GGGTTTGGA ] [+] EMBL CF314927 [ tgGACTGAA GAGTAGAAA CTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCC TGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAA GGTGGGA GGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCA GGTGGA TTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAANTATACT GGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGCCCTGGTGGTCTG ] [+] EMBL CF336729 [ CGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCAGGTTTTGACCCTAGCAAAGGGTGGGAGGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCA GGTGGATTTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAA TATACTGGGGTTTGGAAGCGCAAGTCAGAACAG ] [+] EMBL CB097163 [ TGATGTTTACATTGCTGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAA GGTGGGA GGCCTGAGTTTTACCATGAAGATGGAATGTATCCTGAGCA GGTGGA TTGGATTGGCCAAAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATGGCAA TATACT GGTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGCCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCTCCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGACAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGNTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGNGTATTGGATATTTTGGATGTATATCTTCGTGGTTAGTGAGTTGTGAAGTTGTAGTTTGCTGTAATTCGTCATCGNTTCCTGNAAACTNCTATTGNAATCAGNGNATTGGTCAGACAAGACACAAATTGATNTTATTCAAGGACATGATGNCCTTTTTAAAANGAAAAAAAAAAAAAAAAAAAAGCGGNCGG] consensusID : consensus_14882#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 276 fasta sequence [GAATGTATCCTATACTGGTTGGAGCGCAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCTCCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCACRGCCCTGCAGTATGWAAGAGACAAAGTTCAAGGCAHTTTKATTTTGGCTTCAAAGCCTGAAGGSACAGGCACACCCA] [+] EMBL AA752624 [GAATGTATCCTATACTGGTTGGAGCGCAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCTCCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCACRGCCCTGCAGTATGWAAGAGACAAAGTTCAAGGCAHTTTKATTTTGGCTTCAAAGCCTGAAGGSACAGGCACACCCA] consensusID : consensus_14882#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 239 fasta sequence [AGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTGGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTAATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAAACAAGACACGAATTGATATTATTCAAGGACATGATGTCTTTTTAAAAGAAAAAAAAAAAAAACACTGTCA] [-] EMBL CF291268 [AGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTGGTGGTTAGTGAGGTGTGAAGTTGTAGTTTGCTGTAATTCGTAATCGTTTCCTGAAAACTCCTATTGAAATCAGTGAATTGTTCAAACAAGACACGAATTGATATTATTCAAGGACATGATGTCTTTTTAAAAGAAAAAAAAAAAAAACACTGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14882#0 GGCATGCGCGAGCGCGACCCCTCCCCCTCGAACCGCCGCGACCTTCTCGATGCTTCCCAA 60 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 ------------------------------------------------------------ consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGTCTCGATCTCCATGGCGGACTCGA 120 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 ------------------------------------------------------------ consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 GCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGGAAACATTGTCT 180 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 ------------------------------------------------------------ consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGTGAGAGGTTTAGTGAGAACAGAGG 240 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 ------------------------------------------------------------ consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 AAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTACATTGCCGACATAAGGGACAGAG 300 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 -------------------------------------------TTCGCCCTTGGACACTG 17 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCTCATAATCCTCACGAGTGCTGTGC 360 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 ACATGACTGAAGGAGTAGAAAAAATCCTCCTCCTCGTGAACTCGTCGCCTTCGTCTTCGT 77 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 CAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGGGAGGCCTGAGTTTTACTATGAAG 420 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 CTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGG 137 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCAAAAGAATCAGATTGACACTGCCA 480 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 CGGCCGCACAGGAAACATTGTCTACAACAAGCTCAAGGAAAGGTCTGACCAGTTTGTTGT 197 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 AAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATCCATGGGAGGAACAAATCCTAACC 540 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 GAGAGGTTTAGTGAGAACAGAGGAAAGCAAACAAAAGATTGGTGGAGGCAATGATGTTTA 257 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ATCCACTGAACAGCCTAGGCAATGGCAATATACTGGTTTGGAAGCGCAAGTCAGAACAGT 600 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 CATTGCCGACATAAGGGACAGAGATCATCTTGTGCCTGCTGTTCAAGGTGTCGATGCGCT 317 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ATTTGGCAGACAGTGGAGTCCCTTATACAATAATAAGGCCTGGTGGTCTGCAAGACAAAG 660 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 CATAATCCTCACGAGTGCTGTGCCAAAGATGAAACCTGGTTTTGACCCTAGCAAAGGTGG 377 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ACGGGGGAGTGAGGGAGTTGATTGTTGGCAATGACGATGAACTTCTCCAGACAGACACGA 720 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 GAGGCCTGAGTTTTACTATGAAGATGGAATGTATCCTGAGCAGGTGGATTGGATTGGCCA 437 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 AGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTGTGTTCAGGCCCTGCAGTATGAAGAGA 780 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 AAAGAATCAGATTGACACTGCCAAAGCTGCTGGAGTGAAGCATATCGTGCTTGTGGGATC 497 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 CAAAGTTCAAGGCATTTGATTTGGCTTCAAAGCCTGAAGGCACAGGCACACCAACAAAAG 840 consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 CATGGGAGGAACAAATCCTAACCATCCACTGAACAGCCTAGGCAATG-GCAATATACTGG 556 consensus_14882#2 ------------------------------------------GAATGTATCCTATACTGG 18 consensus_14882#0 ACTTCAAATCGTTGTTCTCCCAGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATC 900 consensus_14882#3 ---------------------AGGTTACAGCCCGATTTTGAGCCATCTTGAGGAGCAATC 39 consensus_14882#1 GTTTGGAAGCGCAAGTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATA 616 consensus_14882#2 TT---GGAGCGCA-GTCAGAACAGTATTTGGCAGACAGTGGAGTCCCTTATACAATAATA 74 ** * * ** ** *** * *** consensus_14882#0 TCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTCGTGGTTAGTGAGGTG 960 consensus_14882#3 TCATCTCGGTTTCCTTGTGTATTGGATATTTGGATGTATATCTTGGTGGTTAGTGAGGTG 99 consensus_14882#1 AGCCCTGGTGGTCTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATG-A 675 consensus_14882#2 AGGCCTGGTGG-CTGCAAGACAAAGACGGGGGAGTGAGGGAGTTGATTGTTGGCAATG-A 132 ** * * * ** * ** ** * *** * * * consensus_14882#0 TGAAGTTGTAGTTTGCTGTAATTCGTCATCGTTTCCTGAAAAC--TCCTATTGAAATCAG 1018 consensus_14882#3 TGAAGTTGTAGTTTGCTGTAATTCGTAATCGTTTCCTGAAAAC--TCCTATTGAAATCAG 157 consensus_14882#1 CGATGAACTTCTCCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTG 735 consensus_14882#2 CGATGAACTTCTCCAGACAGACACGAAGTCAATTCCAAGAGCTGATGTTGCTGAAGTTTG 192 ** * * * * ** ** **** * * * **** * * consensus_14882#0 TGAATT-GTTCAGACAAGACACAAATTGATATTATTCAAGGACATGATGTCTT--TTTAA 1075 consensus_14882#3 TGAATT-GTTCAAACAAGACACGAATTGATATTATTCAAGGACATGATGTCTT--TTTAA 214 consensus_14882#1 TGTTCA-GGCCCTGCAGTATGAA-GA-GACAAAGTTCAAGGCATTT--GATTTGGCTTCA 790 consensus_14882#2 TGTTCACRGCCCTGCAGTATGWAAGA-GACAAAGTTCAAGGCAHTTTKATTTTGGCTTCA 251 ** * ** * ** * ******* * ** ** * consensus_14882#0 AA----AAAAAAAATTGCGCTGTTAAAAA------------------------------- 1100 consensus_14882#3 AAGAAAAAAAAAAAAAACACTGTCA----------------------------------- 239 consensus_14882#1 AAGCCTGAAGGCACAGGCACACCAACAAAAGACTTCAAATCGTTGNTCTCCCAGGTTACA 850 consensus_14882#2 AAGCCTGAAGGSACAGGCACACCCA----------------------------------- 276 ** ** * * * * consensus_14882#0 ------------------------------------------------------------ consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 GCCCGATTTTGAGCCATCTTGAGGAGCAATCTCATCTCGGTTTCCTTGNGTATTGGATAT 910 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ------------------------------------------------------------ consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 TTTGGATGTATATCTTCGTGGTTAGTGAGTTGTGAAGTTGTAGTTTGCTGTAATTCGTCA 970 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ------------------------------------------------------------ consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 TCGNTTCCTGNAAACTNCTATTGNAATCAGNGNATTGGTCAGACAAGACACAAATTGATN 1030 consensus_14882#2 ------------------------------------------------------------ consensus_14882#0 ------------------------------------------------------------ consensus_14882#3 ------------------------------------------------------------ consensus_14882#1 TTATTCAAGGACATGATGNCCTTTTTAAAANGAAAAAAAAAAAAAAAAAAAAGCGGNCGG 1090 consensus_14882#2 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||