These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1050 fasta sequence [TTCGCCCTTGGACACTCCATGGACTGAAGGAGTAGACACTGACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACTGTTGAGTCGTTCTGGGTTTGCTACTGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAGGCTGTGATGACATTTAGAGATTCAATTAAGAGGCATTTGAAGCTGCCACACAGCTATCTGGTTGGGGTCCAAACCACATGGTGGCTTAATTGCAGGATAACTCATCTTACAGGAACCCGTGGTTGAAAGGGTAAGCCTCCTTGGCACATATTGAGCTGGTATGTTGCTCTAACGTTCGGGCTGGGGGTTGTCTTTGACACTGGCTTGCCTGCGACTAAACGACTTTTGTGTTGAACGTGCGACTGGTTGTTAATCGGGAATTGAAGGCCCGTTTGTGGCATAGGGTAAGGTACCGTGAGAGGCGATCAGTCAGGTTACGGGAGGGTGCTGGCCTGGGTGTGATCGGGAGCATGAGTGGTTTGGGAAGTTGTGCAGGTAGGGTGGGGACGGTAGAAGCGTGGGAGAAGGTGGAGT] [+] EMBL CF292193 [TTCGCCCTTGGACACTCCATGGACTGAAGGAGTAGACACTGACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACTGTTGAGTCGTTCTGGGTTTGCTACTGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGTTGGTGCTAGTGGGTGATCAACTTGATTATA ] [+] EMBL BE039786 [ AGGGCGCGCCATGGAGCCTGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACTGTTGAGTCGTTCTGGGTTTGCTACTGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAGGCTGTGATGACATTTAGAGATTCAATTAAGAGGCATTTGAAGCTGCCACACAGCTATCTGGTTGGGGTCCAAACCACATGGTGGCTTAATTGCAGGATAACTCATCTTACAGGAACCCGTGGTTGAAAGGGTAAGCCTCCTTGGCACATATTGAGCTGGTATGTTGCTCTAACGTTCGGGCTGGGGGTTGTCTTTGACACTGGCTTGCCTGCGACTAAACGACTTTTGTGTTGAACGTGCGACTGGTTGTTAATCGGGAATTGAAGGCCCGTTTGTGGCATAGGGTAAGGTACCGTGAGAGGCGATCAGTCAGGTTACGGGAGGGTGCTGGCCTGGGTGTGATCGGGAGCATGAGTGGTTTGGGAAGTTGTGCAGGTAGGGTGGGGACGGTAGAAGCGTGGGAGAAGGTGGAGT] consensusID : consensus_14884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 980 fasta sequence [TGGACTGAAGGAGTAGAAACCAGTTCCCAACTCCCATCAACCATCCTTCTCGACTCCACTGACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCT-GGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGC-ACTGTTGAGTCGTTC-TGGGTTTGCTAC-TGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGG-T-GTTGGTGCTAGT-GGGTGATCAACTTGATTATAGTGATGATGTTTGT-GGCG-TTGTA-CT-CA-GTG-TTCGTTTCA-ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC-AGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACA-CAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCA-TGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCA-TGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF328046 [TGGACTGAAGGAGTAGAAACCAGTTCCCAACTCCCATCAACCATCCTTCTCGACTCCACTGACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGATCGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCT GGGGCGAGGTCGCAGTCCCACGAGGACAACATCAAGAAGATCGTCGACTTCAGC ACTGTTGAGTCGTTC TGGGTTTGCTAC TGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGNT GTTGGTGCTAGTGGGGTGATCAACTTGATTATAGTGATGATGTTTGT GGCG TTGTA CT CA GTG TTCGTTTCA ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC ANGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACA CAGCTATCTGATGGAGTACAAACCACATG ] [+] EMBL AK059989 [ ACTCCCATCAACCATCCTTCTCGACTCCACTGACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCT GGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGC ACTGTTGAGTCGTTC TGGGTTTGCTAC TGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGG T GTTGGTGCTAGT GGGTGATCAACTTGATTATAGTGATGATGTTTGT GGCG TTGTA CT CA GTG TTCGTTTCA ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC AGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACA CAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCA TGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCA TGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAG ] [+] EMBL CF278317 [ CGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTTTGGTACACGCGCCGGACTCCT GGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGC ACTGTTGAGTCGTTC TGGGTTTGCTACACGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGGGCGGTGGCGAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGG T GTTGGTGCTAGT GGGTGATCAACTTGATTATAGTGATGATGTTTGT GGCG TTGTA CT CA GTG TTCGTTTCA ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC AGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACA CAGCTATCTGATGGAGTACAAAC ] [+] EMBL CF278376 [ ACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCT GGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGC ACTGTTGAGTCGTTC TGGGTTTGCTAC TGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGG TGGTTGGTGCTAGTGGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGGCG TTGTC CT CA GTGTTTCGTTTCA ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC AGGCTGTGATGACATTAA ] [+] EMBL CF280326 [ CCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGTCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCT GGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGC ACTGTTGAGTCGTTC TGGGTTTGCTAC CGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTC ] [+] EMBL C74275 [ caAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGNAGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCANCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGGGCGAAGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCAANTGTTGANTCGTTCTTGGGTTTGCTAa ] [-] EMBL CF328047 [ CTGTTGAGTCGTTC TGGGTTTGCTAC TGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGG T GTTGGTGCTAGT GGGTGATCAACTTGATTATAGTGATGATGTTTGT GGCG TTGTA CT CA GTG TTCGTTTCA ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAAGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACA CAGCTATTTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCA TGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCA TGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATCGTGAAAAAAA ] [+] EMBL BQ907393 [ AGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGG T GTTGGTGCTAGT GGGTGATCAACTTGATTATAGTGATGATGTTTGT GGCGCTTGTACCTCCACGTG TTCGTTTCACATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCCCC AGGCTGTGATGACCTTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACCAGCTATCTGATGGAGTACNAACCACATGATGCTTCCCTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCACTGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCACTGGGACTAAACCTTGCTATGTGTTGTGCATCCCAACTCTGTTATGCCATGGAC ATCCAAATGCCCAGAATTATCGTGAAAAAAAAAA ] [-] EMBL CF280327 [ TTATAGTGATGATGTTTGT GGCG TTGTA CT CA GTG TTCGTTTCA ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC AGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACA CAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCA TGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCA TGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATCGTGAAAAAAA ] [+] EMBL CF331738 [ GTTTGT GGCG TTGTA CT CA GTG TTCGTTTCA ATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC AGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACA CAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCA TGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCA TGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATCGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14884#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence [ATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCATGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATCGTGAAAAANNNNNNANNANGNNNACCNNCAGGANACAGACAACNANAACACCACAANACCNNCCCNCCCCCGCGGGCCGGCGGGCGGGGGCGCGAGAGCATCGGGGGGTGGGCGGCGAG] [+] EMBL CA758864 [ATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCAGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCATGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATCGTGAAAAANNNNNNANNANGNNNACCNNCAGGANACAGACAACNANAACACCACAANACCNNCCCNCCCCCGCGGGCCGGCGGGCGGGGGCGCGAGAGCATCGGGGGGTGGGCGGCGAG] consensusID : consensus_14884#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 420 fasta sequence [GGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCCAGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCATGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATC-GTGATGCCTTA-----AAAAAAAAA] [-] EMBL CF278377 [GGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCCAGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCATGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATC GTGATGCCTTA AAAAAAAAA] [+] EMBL AU172785 [ GTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCA CCAGGCTGTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATGGAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCTGTGCTTGCATGGGACTAAACCTTGCTATGTGTTGTGCATCCAAACTCTGTTATGCTATGGACAATCAAAATGCCCAGAATTATCTGTGATGCCTTATTGTTAAAAAAAA ] consensusID : consensus_14884#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [GCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCCTGTGCTTGCCATGGGACTAACCTGCTATTGTTGTCATCCCAAAAAACCTCTGTTTATCCACATTGGACAATCAAATGCCCAGAATTATCGTGATCCTTATTGTTAAAAAAAAAA] [+] EMBL BI796392 [GCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTGAGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGTGGATTTCTTTTGAACCCTGTGCTTGCCATGGGACTAACCTGCTATTGTTGTCATCCCAAAAAACCTCTGTTTATCCACATTGGACAATCAAATGCCCAGAATTATCGTGATCCTTATTGTTAAAAAAAAAA] consensusID : consensus_14884#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 210 fasta sequence [TAAAACGAACCAACCATGACAGTATAACAATAAGGCATCACGAAAATTCTGGGCATTTCGATTGTCCATACCATAACAGAGTTTGGATGCACAACACATAGCAAGGGTTAATCCCATTCAAGCACAGGGTCAAAAAAAATTCACGAGGCGATAGTTTAAAGGAAGATAACAGCTAAATATGTGACCATGGAGCTTATCCTCTCAACCACG] [+] EMBL CF278318 [TAAAACGAACCAACCATGACAGTATAACAATAAGGCATCACGAAAATTCTGGGCATTTCGATTGTCCATACCATAACAGAGTTTGGATGCACAACACATAGCAAGGGTTAATCCCATTCAAGCACAGGGTCAAAAAAAATTCACGAGGCGATAGTTTAAAGGAAGATAACAGCTAAATATGTGACCATGGAGCTTATCCTCTCAACCACG] consensusID : consensus_14884#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 127 fasta sequence [CTTCTCGACTCCACTGACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGNNCAGGAGGAGCTGNNNNNNNAGCACGACGANNCCGC] [+] EMBL CF197252 [CTTCTCGACTCCACTGACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGGAGAAGAGGGAGGCCGNNCAGGAGGAGCTGNNNNNNNAGCACGACGANNCCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 TGGACTGAAGGAGTAGAAACCAGTTCCCAACTCCCATCAACCATCCTTCTCGACTCCACT 60 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 GACCAAACACCCCAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATGGAGCCGGCGGCGG 120 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 AGAAGAGGGAGGCCGAGCAGGAGGAGCTGCAGCAGCAGCACGACGAGCCCGCCGTCCCTT 180 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 CCGCCGACGACGACGAGGCTGAGGCGGAGGAGAACGAGCGCCGCAACCGCGAGCTCAAGG 240 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 CCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCTATGGTACACGCGCCGGACTCCTGGGG 300 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 CGAGGTCGCAGTCCTACGAGGACAACATCAAGAAGATCGTCGACTTCAGCACTGTTGAGT 360 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 CGTTCTGGGTTTGCTACTGCCACCTCACGCGGCCGGTTAGCCTGCCGAGCCCCACCGACC 420 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ---------------------------------------ATCCCGCAAATAGGAGCGGTG 21 consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 TGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTGGGAGGATCCCGCAAATAGGAGCGGTG 480 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 GCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGT 81 consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 GCAAGTGGATCATAAGGTTTAAGAAGACCGTCTCTGGTCGTTTCTGGGAGGATTTGGTGT 540 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 TGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTG 141 consensus_14884#3 -GGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTG 59 consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 TGGTGCTAGTGGGTGATCAACTTGATTATAGTGATGATGTTTGTGGCGTTGTACTCAGTG 600 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 TTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC-AGGCT 200 consensus_14884#3 TTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACCCAGGCT 119 consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 TTCGTTTCAATGAGGACATTCTAAGTGTCTGGAACCGTAATGCATCTGACCACC-AGGCT 659 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 GTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATG 260 consensus_14884#3 GTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATG 179 consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 GTGATGACATTAAGAGATTCAATTAAGAGGCATCTGAAGCTGCCACACAGCTATCTGATG 719 consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ------------------------------------------------------------ consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 GAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTG 320 consensus_14884#3 GAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTG 239 consensus_14884#4 ------------------GCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTG 42 consensus_14884#1 GAGTACAAACCACATGATGCTTCACTGCGGGATAACTCATCTTACAGGAACACGTGGTTG 779 consensus_14884#5 ------------------------------------------TAAAACGAACCAACCATG 18 consensus_14884#0 --------------------------------TTCGCCCTTGGACACTCCATGGACTGAA 28 consensus_14884#6 -------------------------------------------------------CTTCT 5 consensus_14884#2 AGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGT 380 consensus_14884#3 AGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGT 299 consensus_14884#4 AGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGT 102 consensus_14884#1 AGAGGATAAGCTCCATGGTCACATATTTAGCTGTTATCTTCCTCTAAACTATCGCCTCGT 839 consensus_14884#5 ACAGTATAA-CAATAAGGCATCACGAAAATTCTGGGCATTTCGATTGTCCATACCATAAC 77 * consensus_14884#0 GGAGTAGACACTGACCAAACACCC-CAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATG 87 consensus_14884#6 CGACTC--CACTGACCAAACACCC-CAGCGGACCAAATCGCCGCAGCAGGGCGCGCCATG 62 consensus_14884#2 GGATTTCTTTTGAACC-TGTGCTTGC-ATGGGACTAAACCTTGCTATGTGTTGTGCATCC 438 consensus_14884#3 GGATTTCTTTTGAACC-TGTGCTTGC-ATGGGACTAAACCTTGCTATGTGTTGTGCATCC 357 consensus_14884#4 GGATTTCTTTTGAACCCTGTGCTTGCCATGGGACTAA--CCTGCTAT-TGTTGTCATCCC 159 consensus_14884#1 GGATTTCTTTTGAACC-TGTGCTTGC-ATGGGACTAAACCTTGCTATGTGTTGTGCATCC 897 consensus_14884#5 AGAGTTTGGATGCACA--ACACATAGCAAGGG-TTAATCCCATTCAAGCACAGGGTCAAA 134 ** * ** * ** ** * consensus_14884#0 GAG------CCGGCGGCGGA----GAAGAGGGAGGCCGAGCAGG---AGGAGCTGCAGCA 134 consensus_14884#6 GAG------CCGGCGGCGGA----GAAGAGGGAGGCCGNNCAGG---AGGAGCTGNNNNN 109 consensus_14884#2 AAA----CTCTGTTATGCTA---TGGACAATCAAAATGCCCAGA---ATTATCGTGAAAA 488 consensus_14884#3 AAA----CTCTGTTATGCTA---TGGACAATCAAAATGCCCAGA---ATTATCGTGA--- 404 consensus_14884#4 AAAAAACCTCTGTTTATCCACATTGGACAATCAAA-TGCCCAGA---ATTATCGTGATCC 215 consensus_14884#1 AAA----CTCTGTTATGCTA---TGGACAATCAAAATGCCCAGA---ATTATCGTGAAAA 947 consensus_14884#5 AAAAAT-TCACGAGGCGATAGTTTAAAGGAAGATAACAGCTAAATATGTGACCATGGAGC 193 * * * * * * * * consensus_14884#0 GCAGCACGACGAGCCCGCCGTCCCTTCCGCCGACGACGACGAGGCTGAGGCGGAGGAGAA 194 consensus_14884#6 NNAGCACGACGANNCCGC------------------------------------------ 127 consensus_14884#2 ANNNNNNANNANGNNNACCNNCAGGANACAGACAACNANAACACCACAANACCNNCCCNC 548 consensus_14884#3 -TGCCTTAAAAAAAAAA------------------------------------------- 420 consensus_14884#4 TTATTGTTAAAAAAAAAA------------------------------------------ 233 consensus_14884#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------------------- 980 consensus_14884#5 TTATCCTCTCAACCACG------------------------------------------- 210 consensus_14884#0 CGAGCGCCGCAACCGCGAGCTCAAGGCCGGCTTCCATCCCCTTAGGCGTAGATTCGTGCT 254 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 CCCCGCGGGCCGGCGGGCGGGGGCGCGAGAGCATCGGGGGGTGGGCGGCGAG-------- 600 consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ATGGTACACGCGCCGGACTCCTGGGGCGAGGTCGCAGTCCTACGAGGACAACATCAAGAA 314 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 GATCGTCGACTTCAGCACTGTTGAGTCGTTCTGGGTTTGCTACTGCCACCTCACGCGGCC 374 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 GGTTAGCCTGCCGAGCCCCACCGACCTGCATCTTTTCAAGGAGGGCATCCGGCCCCTCTG 434 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 GGAGGATCCCGCAAATAGGAGCGGTGGCAAGTGGATCATAAGGTTTAAGAAGACCGTCTC 494 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 TGGTCGTTTCTGGGAGGATTTGGTGTTGGTGCTAGTGGGTGATCAACTTGATTATAGTGA 554 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 TGATGTTTGTGGCGTTGTACTCAGTGTTCGTTTCAATGAGGACATTCTAAGTGTCTGGAA 614 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 CCGTAATGCATCTGACCACCAGGCTGTGATGACATTTAGAGATTCAATTAAGAGGCATTT 674 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 GAAGCTGCCACACAGCTATCTGGTTGGGGTCCAAACCACATGGTGGCTTAATTGCAGGAT 734 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 AACTCATCTTACAGGAACCCGTGGTTGAAAGGGTAAGCCTCCTTGGCACATATTGAGCTG 794 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 GTATGTTGCTCTAACGTTCGGGCTGGGGGTTGTCTTTGACACTGGCTTGCCTGCGACTAA 854 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 ACGACTTTTGTGTTGAACGTGCGACTGGTTGTTAATCGGGAATTGAAGGCCCGTTTGTGG 914 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 CATAGGGTAAGGTACCGTGAGAGGCGATCAGTCAGGTTACGGGAGGGTGCTGGCCTGGGT 974 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 GTGATCGGGAGCATGAGTGGTTTGGGAAGTTGTGCAGGTAGGGTGGGGACGGTAGAAGCG 1034 consensus_14884#6 ------------------------------------------------------------ consensus_14884#2 ------------------------------------------------------------ consensus_14884#3 ------------------------------------------------------------ consensus_14884#4 ------------------------------------------------------------ consensus_14884#1 ------------------------------------------------------------ consensus_14884#5 ------------------------------------------------------------ consensus_14884#0 TGGGAGAAGGTGGAGT 1050 consensus_14884#6 ---------------- consensus_14884#2 ---------------- consensus_14884#3 ---------------- consensus_14884#4 ---------------- consensus_14884#1 ---------------- consensus_14884#5 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||