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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1331 fasta sequence
[TCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTTGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTGTCGGGTAAACTACTTGGAGCTCACGTAGCCCATGCAGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGGTTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCCGGGGGAGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCATCTAATTTCCTCCGCAGTCTTAAGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCGGAGACTCTTGAAGAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACCTAATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATATATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAAAAATTACCAATTTGACCCTTAGCCCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGGGGGAGAGGGTTGGATTGTTAGTGTGGATGATTTAGAAGATATAATTGGGGGACATGTATGGTTGGGTTTCATTTGTGTATTTGGCGGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGGGTTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGGTGAGTTTTATGGACCTACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTNNNNTCTGTGGGTGGCGNNNNTACCGAGATCAATGCAGTTAATTATGTTTCTCCTNNNNGTTGGNNNNNGACTTCCCATNNNGNTCTAGGATTCTTCTTTTTTGTGGGCCANNNNNNGCATGCANNNNNNNNN]
[+] EMBL CB640978 [TCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGTCGTGACCAAGAAACCACCGGTTTTGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTGTCGGGTAAACTACTTGGAGCTCACGTAGCCCATGCAGGATTAATCGTATTCTGGGCCGGAGCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGGTTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCCGGGGGAGAAGTTCTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCATCTAATTTCCTCCGCAGTCTTAAGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCGGAGACTCTTGAAGAATCTTTTCCATTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACCTAATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATATATGATAC ]
[+] EMBL AU162901 [ CTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATATATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAAAAATTACCAATTTGACCCTTAGCCCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGGGGGAGAGGGTTGGATTGTTAGTGTGGATGATTTAGAAGATATAATTGGGGGACATGTATGGTTGGGTTTCATTTGTGTATTTGGCGGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGGGTTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGGTCAGTTTTATGGACCNACTGGGCCAGAAGCTTCTCAAGNTCAAGCATTTACTTT ]
[+] EMBL CF294180 [ GGGCTCGCCGTGCATTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTT GGTTTTATCGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCC TTTTGAGTTTTATGGACCTACTGTTTCAGAAGCTTCTCAAGCTCATTCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTG ]
[+] EMBL CF196201 [ CTGGTTCAATAATACAGCTTATCCGA GTGAGTTTTATGGACCTACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTTGGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCCCCAACGGGAGAGGTTATTTTTGGAGGGGAAACTATGCGTTTTTGGGACCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTNNNNTCTGTGGGTGGCGNNNNTACCGAGATCAATGCAGTTAATTATGTTTCTCCTNNNNGTTGGNNNNNGACTTCCCATNNNGNTCTAGGATTCTTCTTTTTTGTGGGCCANNNNNNGCATGCANNNNNNNNN]
consensusID : consensus_14893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 616 fasta sequence
[TCGCTCTTGACTAATGTGGGATCTGCCCAAGACCCA-GGTGTAGTAATATCTAATGCGTTCCCC-ACGGGAGAGG-TA-TTTTGGA--GGGGAAA-CTAT-GCGTT-TTT--GGGA-CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG-TTGAAAAAAGACAT-ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA-CCGA-GA-TCAATGCAGTT-AATTATGT-TT-CTCCTAGA-AGTTGGTTAGCGACTTCCCA-TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT-TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC-AACGTATTCAATACGCAAAAAAAAAAAAAAAAAAAANA]
[+] EMBL BI807691 [TCGCTCTTGACTAATGTGGGATCTGCCCAAGACCCA GGTGTAGTAATATCTAATGCGTTCCCC AC GGAGAGG TA TTTTGGA GGGAAA CTAT GCGTT TTT GGGA CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TC ATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGT GGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC AACGTATTCAATACGCAAAA ]
[+] EMBL BM419847 [ aattGGATCGCCCCAAGACCCACAGTTTAGTAATATCTAATGCGTTCCCCAACGGGAGAGG TATTTTTGGA GGGGAAA CTAT GCGTT TTT GGGA CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAAC AATAAAGAAAC AACGTATTC ATACGCAAAAA ]
[-] EMBL CF294179 [ CCA ACGGGAGAGGTTATTTTTGGA GGGGAAA CTAT GCGTT TTT GGGA CCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAA ]
[+] EMBL BI811523 [ gtttaat tt TTTTGGACGGGGGAAACCTATGGCGTTGTTTGGGGGACCCTTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTA G TTGAAAAAAGACATGACAACCTTGGCAAGAACGACGTTC GCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAAT CAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGT GGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC AACGTATTCAATACGCAAAA ]
[+] EMBL BE229535 [ cgagATGGYTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTA STA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCSGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCC TTCTATGAAAGAAAGATAAGGGGMCAGAACAAAAAAA ]
[+] EMBL CF589229 [ GGACTTGAGTAGG TTGAAAAAAGACAT ACAACCTTGGCAAGAACGACGTTCGGCAGAATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTA CCGA GA TCAATGCAGTT AATTATGT TT CTCCTAGA AGTTGGTTAGCGACTTCCCA TTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAAACGTA ]
[+] EMBL BI809954 [ GTGGCGTAGCTAGCCGAGGAGTCAATGCAGTTGAATTATGTGTTGCTCCTAGAGAGTTGGTTAGCGACTTCCCAGTTTTGTTCTAGGATTCTTCTTTTTTGTGGGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGTGTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAAC AACGTATTC ATACGCAAAAA ]
[+] EMBL BI798747 [ ATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAAC AAAAAAAC AATAAAGAAAC AACGTATTCAATACGCAAAA ]
[+] EMBL BI798364 [ ATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAAC AAAAAAACCCATAAAGAAAC AACGTATTC ATACGCAAAA ]
[+] EMBL AU181103 [ TTATTTATACCTGTTCTACTGT TTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAACCAAATAAAGAACA AACGTATTCAATACGCAAAAAAAAAAAAAAAAAAAANA]
consensusID : consensus_14893#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[GGNGNTTTGGGGGGGGGGGNGNCCAAAACNACCCTTTCCCGGGGGGGTTTTAAAAAGGGAAAAGTTCCNAANGAAGGGGCGGGGCAAAAAATATGGGGTGGTTAATTTTTGGNNCCNGGGTNAAATTNGTTTCGGTTTNNATTNGGGGGATGGGGGGGAAAAANTTAAAACGGAAANNGTTGGNCCNGANAACCCCAAGTTGGAATTAACCNTCAATAAAGGAACAAANGNGGGGTTCCCCNGCGGNGGGGCCGTTTTAGAAANAGNGNATCCCCCGGGCNGCNGGAANTCGGAAGGAGGAAGNNCCNGGGNTGTGCAGCAGGATTTGAAAAGGGANTNGATTGNGATTTGGAGCCTGTTTTTNANANGACCCCTTTTAANTAAGATTTTTTTATTTANACCTGTTNTACTGTTTTTTTNTGTTNTGGNTCGGTTATTTTATTTAGCCGAGCCATTCATTCCTTTTTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAAACGTATTCAATACGCAAAAGAAAAGAGAGGAGGATGTGAAGAAAGAAGATATTTACCACC]
[-] EMBL BE229232 [GGNGNTTTGGGGGGGGGGGNGNCCAAAACNACCCTTTCCCGGGGGGGTTTTAAAAAGGGAAAAGTTCCNAANGAAGGGGCGGGGCAAAAAATATGGGGTGGTTAATTTTTGGNNCCNGGGTNAAATTNGTTTCGGTTTNNATTNGGGGGATGGGGGGGAAAAANTTAAAACGGAAANNGTTGGNCCNGANAACCCCAAGTTGGAATTAACCNTCAATAAAGGAACAAANGNGGGGTTCCCCNGCGGNGGGGCCGTTTTAGAAANAGNGNATCCCCCGGGCNGCNGGAANTCGGAAGGAGGAAGNNCCNGGGNTGTGCAGCAGGATTTGAAAAGGGANTNGATTGNGATTTGGAGCCTGTTTTTNANANGACCCCTTTTAANTAAGATTTTTTTATTTANACCTGTTNTACTGTTTTTTTNTGTTNTGGNTCGGTTATTTTATTTAGCCGAGCCATTCATTCCTTTTTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAAACGTATTCAATACGCAAAAGAAAAGAGAGGAGGATGTGAAGAAAGAAGATATTTACCACC]
consensusID : consensus_14893#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[CGAGAHCNNNVGAGGTTATTTTTTGGAGGGGAAACTATGCGTTTTTGGRGACCTHTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAWATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTASTACCGAGATCAATGCAGTTAATTATGTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGADAGATAAGGGGCCAGAACAAAAAAACAA]
[+] EMBL AA754448 [CGAGAHCNNNVGAGGTTATTTTTTGGAGGGGAAACTATGCGTTTTTGGRGACCTHTCGTGCTCCATGGTTAGAACCTCTAAGGGGCCCCAACGGTTTGGACTTGAGTAGGTTGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAWATATATGACCCATGCTCCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTASTACCGAGATCAATGCAGTTAATTATGTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTGGGCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATCGATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTATACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCATTCCTTTCTATGAAAGADAGATAAGGGGCCAGAACAAAAAAACAA]
consensusID : consensus_14893#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 490 fasta sequence
[GCCCCCAACCGTTTTGGACTTGAGTAGTTTGAAAAAAGACATCACAACCTTGCCAAGAACGACGTTCGCCAGAATATATGACCCATGGCTCCTTTAGGCTCTTGTGAAATTCTGTGGGGTGGCGTAAGCTACCGAGATCAAATGCCAGTTAATTATGGTTTCTCCTAGAAGTTGGTTAGCGACTTGCCCATTTTGGTTCTAGGATTCTTGCTGTTTTTGGTGGGCCCATTTGTGCCATCAGGAAGAGCCCGGGCTGCTCACCAGGATTTGGAAAAGGGAATCGATCGTGATTTGGACCCTGGTTCTTAACCATGACCCCTTCTTAACTAAAGATTTTCTTAATTGAATGAACCCTGGTTCCTTAACCTGGTTTTTTTCTGGTTCTGGCTCCGGTTATTCTTATCTACCCGACCATTCATCCTTTCTAGTGAAAGAAAGATAAGGGGACAGACACAACCAATAAAGAAACAACCGTATCCAATACCCAAAA]
[+] EMBL BI799606 [GCCCCCAACCGTTTTGGACTTGAGTAGTTTGAAAAAAGACATCACAACCTTGCCAAGAACGACGTTCGCCAGAATATATGACCCATGGCTCCTTTAGGCTCTTGTGAAATTCTGTGGGGTGGCGTAAGCTACCGAGATCAAATGCCAGTTAATTATGGTTTCTCCTAGAAGTTGGTTAGCGACTTGCCCATTTTGGTTCTAGGATTCTTGCTGTTTTTGGTGGGCCCATTTGTGCCATCAGGAAGAGCCCGGGCTGCTCACCAGGATTTGGAAAAGGGAATCGATCGTGATTTGGACCCTGGTTCTTAACCATGACCCCTTCTTAACTAAAGATTTTCTTAATTGAATGAACCCTGGTTCCTTAACCTGGTTTTTTTCTGGTTCTGGCTCCGGTTATTCTTATCTACCCGACCATTCATCCTTTCTAGTGAAAGAAAGATAAGGGGACAGACACAACCAATAAAGAAACAACCGTATCCAATACCCAAAA]
consensusID : consensus_14893#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 278 fasta sequence
[GAAGAGCCCGGGCTGNTGCAGCAGGATTTGAAAAGGGAATNGATTGTGATTTGGNGCCTGTTTTTAANANGACCCCTTTTAANTAAGATTTTTTTATTTAAACCTGTTNTACTGTTTTTTTNTGTTTNGGNTCGGTTATTTTATTTAGCCGAGCCATTNATTCCTTTTTATGAAAGAAAGATANGGGGACAGAACNAAAAAAACAAATAANGAAACAAACGTNTTCNANACGCAAAAGAAAAGAGNGGNGGATGTGAAGAAAGAAGATNTTTACCNCC]
[-] EMBL BE229231 [GAAGAGCCCGGGCTGNTGCAGCAGGATTTGAAAAGGGAATNGATTGTGATTTGGNGCCTGTTTTTAANANGACCCCTTTTAANTAAGATTTTTTTATTTAAACCTGTTNTACTGTTTTTTTNTGTTTNGGNTCGGTTATTTTATTTAGCCGAGCCATTNATTCCTTTTTATGAAAGAAAGATANGGGGACAGAACNAAAAAAACAAATAANGAAACAAACGTNTTCNANACGCAAAAGAAAAGAGNGGNGGATGTGAAGAAAGAAGATNTTTACCNCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14893#0 TCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATGGAACTTTTGTTTTAGCTGGT 60
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 CGTGACCAAGAAACCACCGGTTTTGCTTGGTGGGCCGGGAATGCCAGACTTATCAATTTG 120
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 TCGGGTAAACTACTTGGAGCTCACGTAGCCCATGCAGGATTAATCGTATTCTGGGCCGGA 180
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 GCAATGAACCTATTTGAAGTGGCCCATTTCGTACCAGAAAAACCCATGTATGAACAAGGG 240
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 TTGATTTTACTTCCGCACTTAGCTACTCTAGGTTGGGGAGTAGGGCCCGGGGGAGAAGTT 300
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 CTAGATACTTTTCCGTACTTTGTATCTGGAGTACTTCATCTAATTTCCTCCGCAGTCTTA 360
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 AGCTTCGGTGGCATTTATCACGCGCTTCTGGGACCGGAGACTCTTGAAGAATCTTTTCCA 420
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 TTCTTTGGTTATGTGTGGAAAGATAGAAATAAAATGACTACAATTTTGGGTATTCACCTA 480
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 ATTTTGTTAGGTATAGGTGCTTTTCTTCTAGTACTCAAAGCTCTTTATTTTGGCGGTATA 540
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 TATGATACCTGGGCTCCTGGGGGAGGAGATGTAAGAAAAATTACCAATTTGACCCTTAGC 600
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 CCCGGTGTTATATTTGGTTATTTACTAAAATCCCCTTTTGGGGGAGAGGGTTGGATTGTT 660
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 AGTGTGGATGATTTAGAAGATATAATTGGGGGACATGTATGGTTGGGTTTCATTTGTGTA 720
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 TTTGGCGGAATTTGGCATATCTTAACCAAACCCTTCGCATGGGCTCGCCGTGCATTTGTA 780
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 TGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGCGCTTTATCTGTCTTTGGGTTTTAT 840
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 ---------------------------------------------GCCCCCAACCGTTTT 15
consensus_14893#2 --------GGNGNTTTGGGGGGGGGGGNGNCCAAAACNACCCTTTCCCGGGGGGGTTTTA 52
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 CGCTTGTTGTTTTGTCTGGTTCAATAATACAGCTTATCCGAGG-TGAGTTTTATGGACCT 899
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 ------------------------------------------------------------
consensus_14893#4 GGACTTGAGTAGTTTGAAAAAAGACATCACAACCTTGCCAAGAACGACGTTCGCCAGAAT 75
consensus_14893#2 AAAAGGGAAAAGTTCCN-----AANGAAGGGGCGGGGCAAAAAATATGGGGTGGTTAATT 107
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 ACTGGGCCAGAAGCTTCTCAAGCTCAAGCATTTACTTTTCTAGTTAGAGATCAGCGTCTT 959
consensus_14893#3 ------------------------------------------------------------
consensus_14893#1 -----------------------------------------------------TCGCTCT 7
consensus_14893#4 ATATGACCCATGGCTCCTTTAGG-CTCTTGTGAAATTCTGTGGGGTGGCGTAAGCTACCG 134
consensus_14893#2 TTTGGNNCCNGGGTNAAATTNGTTTCGGTTTNNA-TTNGGGGGATGGGGGGGAAAAANTT 166
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 GGAGCTAATGTGGGATCTGCCCAAGGACCCACAGGTTTAGGTAAATATCTAATGCGTTCC 1019
consensus_14893#3 ----------------------------------------------------------CG 2
consensus_14893#1 TGA-CTAATGTGGGATCTGCCCAAGACC---CAGGTGTAGT--AATATCTAATGCGTTCC 61
consensus_14893#4 AGATCAAATGCCAGTTAATTATGGTTTCTCCTAGAAGTTGGTTAGCGACTTGCCCATTTT 194
consensus_14893#2 AAAACGGAAANNG--TTGGNCCNGANAACCCCAAGTTGGAATTAACCNTCAATAAAGGAA 224
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 CCAACGGGAGAGGTTATT-TTT-GGAGG------GGAAACTATGCGTTTTTGGGA--CCT 1069
consensus_14893#3 AGAHCNNNVGAGGTTATT-TTTTGGAGG------GGAAACTATGCGTTTTTGGRGACCTH 55
consensus_14893#1 CCA-CGGGAGAGGT-ATT-TT--GGAGG------GGAAACTATGCGTTTTTGGGA--CCT 108
consensus_14893#4 GGTTCTAGGATTCTTGCTGTTTTTGGTG------GGCCCATTTGTGCCATCAGGAAGAGC 248
consensus_14893#2 CAAANGNGGGGTTCCCCNGCGGNGGGGCCGTTTTAGAAANAGNGNATCCCCCGGG-CNGC 283
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 TCGTGCTCCATGGTTAGAACCTCTAAGGG----GCCCCAACGGTTTGGACTTGAGTAGGT 1125
consensus_14893#3 TCGTGCTCCATGGTTAGAACCTCTAAGGG----GCCCCAACGGTTTGGACTTGAGTAGGT 111
consensus_14893#1 TCGTGCTCCATGGTTAGAACCTCTAAGGG----GCCCCAACGGTTTGGACTTGAGTAGGT 164
consensus_14893#4 CCGGGCTGC-TCACCAGGATTTGGAAAAG----GGA--ATCGATCGTGATTTGGACC--C 299
consensus_14893#2 NGGAANTCGGAAGGAGGAAGNNCCNGGGNTGT-GCAGCAGGATTTGAAAAGGGANTNGAT 342
consensus_14893#5 ----------------GAAGAGCCCGGGCTGNTGCAGCAGGATTTGAAAAGGGAATNGAT 44
* * * * * * *
consensus_14893#0 TGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAA-TATATGACCCATGCT 1184
consensus_14893#3 TGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAWATATATGACCCATGCT 171
consensus_14893#1 TGAAAAAAGACATACAACCTTGGCAAGAACGACGTTCGGCAGAA-TATATGACCCATGCT 223
consensus_14893#4 TGGTTCTTAAC-CATGACCCCTTCTTAACTAAAGATTTTCTTAATTGAATGAACCCTGGT 358
consensus_14893#2 TGNGATTTGGAGCCTGTTTTTNANANGACCCCTTTTAANTAAGATTTTTTTATTTANACC 402
consensus_14893#5 TGTGATTTGGNGCCTGTTTTTAANANGACCCCTTTTAANTAAGATTTTTTTATTTAAACC 104
** * * * * *
consensus_14893#0 CCTTTAGGCTCTTTNNNNTCTGTGGGTGGCGNNNNTACCGAGATCAATGCAGTTAATTAT 1244
consensus_14893#3 CCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAST-ACCGAGATCAATGCAGTTAATTAT 230
consensus_14893#1 CCTTTAGGCTCTTTAAATTCTGTGGGTGGCGTAGCTACCGAGATCAATGCAGTTAATTAT 283
consensus_14893#4 TCCTTAACCTGGTTTTTTTCTGGTTCTGGCTCCGG---TTATTCTTATCTACCCGACCA- 414
consensus_14893#2 TGTTNTA--CTGTTTTTTTNTGTTN-TGGNTCGGTTATTTTATTTAGCCGAGCCATTCAT 459
consensus_14893#5 TGTTNTA--CTGTTTTTTTNTGTTT-NGGNTCGGTTATTTTATTTAGCCGAGCCATTNAT 161
* ** * ** ** * *
consensus_14893#0 GTTTCTCCTNNNNGTTGGNNNNNGACTTCCCATNNNGNTCTAGGATTCTTCTTTTTTGTG 1304
consensus_14893#3 GTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTG 290
consensus_14893#1 GTTTCTCCTAGAAGTTGGTTAGCGACTTCCCATTTTGTTCTAGGATTCTTCTTTTTTGTG 343
consensus_14893#4 -TTCATCCTTTCTAGTGAAAGAAAG------ATAAGGGGACAGACACAACCA-----ATA 462
consensus_14893#2 -----TCCTTTTTATGAAAGAAAGA-------TAAGGGGACAGAACAAAAAAAACAAATA 507
consensus_14893#5 -----TCCTTTTTATGAAAGAAAGA-------TANGGGGACAGAACNAAAAAAACAAATA 209
**** * * ** *
consensus_14893#0 GGCCANNNNNNGCATGCANNNNNNNNN--------------------------------- 1331
consensus_14893#3 GGC-ATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATC 349
consensus_14893#1 GGCCATTTGTGGCATGCAGGAAGAGCCCGGGCTGCTGCAGCAGGATTTGAAAAGGGAATC 403
consensus_14893#4 AAGAAACAACCGTATCCAATACCCAAAA-------------------------------- 490
consensus_14893#2 AAGAAACAAACGTATTCAATACGCAAAAGAAAAGAGAGGAGGATGTGAAGAAAGAAGATA 567
consensus_14893#5 ANGAAACAAACGTNTTCNANACGCAAAAGAAAAGAGNGGNGGATGTGAAGAAAGAAGATN 269
* * * *
consensus_14893#0 ------------------------------------------------------------
consensus_14893#3 GATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTAT 409
consensus_14893#1 GATCGTGATTTGGAGCCTGTTCTTTACATGACCCCTCTTAACTAAGATTTTCTTATTTAT 463
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 TTTACCACC--------------------------------------------------- 576
consensus_14893#5 TTTACCNCC--------------------------------------------------- 278
consensus_14893#0 ------------------------------------------------------------
consensus_14893#3 ACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCAT 469
consensus_14893#1 ACCTGTTCTACTGTTTTTTTCTGTTCTGGCTCGGTTATTCTATCTAGCCGAGCCATTCAT 523
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 ------------------------------------------------------------
consensus_14893#3 TCCTTTCTATGAAAGADAGATAAGGGGCCAGAACAAAAAAACAA---------------- 513
consensus_14893#1 TCCTTTCTATGAAAGAAAGATAAGGGGACAGAACAAAAAAAACAAATAAAGAAACAACGT 583
consensus_14893#4 ------------------------------------------------------------
consensus_14893#2 ------------------------------------------------------------
consensus_14893#5 ------------------------------------------------------------
consensus_14893#0 ---------------------------------
consensus_14893#3 ---------------------------------
consensus_14893#1 ATTCAATACGCAAAAAAAAAAAAAAAAAAAANA 616
consensus_14893#4 ---------------------------------
consensus_14893#2 ---------------------------------
consensus_14893#5 ---------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||