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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1365 fasta sequence
[AAATGCGACATGGTTCATGCTTGCTCGATTGATTGATTGCAATAGACAAAAACTCTTCTTGTCTCTTCACCTCGCCACCGGGGCCGCCATACAATTACCTCCATAAATCTTGGATAGAATGTTAGGAGTAACTAACTCTGCACTGTGCCATTGCTGTGTGTCAGTGTGTGTATATATATCCAGCTGCCAGCTGCAGAGTGAAGCATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGATGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGATTACTGCGACAGCTGGCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGACGCCGCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCAAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTTACCGTGAATTAATTAGGCTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAGG]
[+] EMBL AK100363 [AAATGCGACATGGTTCATGCTTGCTCGATTGATTGATTGCAATAGACAAAAACTCTTCTTGTCTCTTCACCTCGCCACCGGGGCCGCCATACAATTACCTCCATAAATCTTGGATAGAATGTTAGGAGTAACTAACTCTGCACTGTGCCATTGCTGTGTGTCAGTGTGTGTATATATATCCAGCTGCCAGCTGCAGAGTGAAGCATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGATGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGATTACTGCGACAGCTGGCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGACGCCGCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCAAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ]
[+] EMBL AK060964 [ AGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGATGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTGGCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCCGCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCAAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCC TCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTT ]
[-] EMBL CB666230 [ CGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTGGGGTTTATCTTTTATAATTGGTTTTACCGTGAAT ]
[-] EMBL CB682383 [ CGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGTTGAGGAACGCCACCGCCACCAATTTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTCGACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTATTACATGGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACACCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTTACCGTGAATTAATTAGGCTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAGG]
consensusID : consensus_14947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1150 fasta sequence
[ATTCCTCGAGCACTGTTGGCCTACTGGATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA-TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG-GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC-GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA-AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG-AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG-AACTCGACGGCGACGGGATCGGTGGTGGAGT-ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC-GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109404 [ATTCCTCGAGCACTGTTGGCCTACTGGATAAACATCAGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK104183 [ AGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ]
[+] EMBL AK061466 [ AGTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ]
[+] EMBL AK104471 [ GTAGACGACGGCGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGG ]
[+] EMBL OSR24731A [ CGATGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTA NCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCNACGGCGACTACTGCNACA NTGTGCGCGTCGGCGTAGAGGCGAA ]
[+] EMBL OSS15091A [ TGGCGCCCAAGCGACTTGTCTGCTTCTTGGCCGTGG CGCCGCGCTAG CACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAG TG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGNCGGCG C GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCG ]
[+] EMBL CB682382 [ GCGACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCTGATCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAATGCTTCGACTGCTGGGACGAGCTCATAT ]
[+] EMBL OSS13158A [ GCGACTTGTCTGCTTCTTGGCCGTGG CGCCGCGCTAG CACCACCTGCCACGGGTGGGGCGCCGGCGNCGGCGATTGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACA NTG GCGCGTCGNCGTGGAGGCGAACAACGTGCGNGGGTGGACGNCGGCGCCNGC AAAGTNGGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGNCGCGACA NA AGGTCGTCGTCGACGAGGC ]
[+] EMBL AU057525 [ GACTTGTCTGCTTCTTGGCCGTGGCCGCCGCGCTA CCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCGAAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAAAGCCACCGCCACCAATCTCATCAAGGAAAGGTTCGACTGCTGGGACGAACTCATATTAAGGTCGGAGAAATTCGANGGNGACGGGAT NGTGGTTGAGTAAAAAGTCGGGGGAGAGGAAGA ]
[+] EMBL CB666229 [ CTGCTTCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGGGCGCCGGCGCCGGCGA TGTCGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTG GCGCGTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACAGCA AGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCTACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGA ]
[+] EMBL CF325304 [ GCGACGGCGACTACTGCGACAGCTG GCGCGTC GCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCC GCGCAAGTGCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACA CANAGGTCGTCGTCGACGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAAGCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGGCAGAGCGTCGGCGTTGCCG AACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGTCAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCACCAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAG AACTCGACGGCGACGGGATCGGTGGTGGAGT ]
[+] EMBL AU173378 [ ACGAGCTCATATTAAGGTCGGAG AACTCGNCGGCGACGGGATCGGTGGTGGAGT ACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGAGAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCCGGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCGCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTACGGTACCTGCCGTGCTGTGCACTGTTGTATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAA ]
[+] EMBL AU057526 [ GCGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTCGTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCAGACACATAAGTTCAGTTAATAATCGGTCGTGTAC GTACCTGNCCTGCTGTGCACTGTTGTATCTTTTTGGTGAGNCGATTGAAATNTNTTTGGGTTTATCTTTTATTNAAAAAnnna ]
consensusID : consensus_14947#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 469 fasta sequence
[ATCAACAACAGCAGACCAGCAAACGAGTCTAACGATGCCCACAGCAACAGCCCGCCCGAGGATTCCCAAACAAGGTGTGTAGAGCCACAGAGACACCGAACACGGCCACGAGCTACGGTCGGCGGGGGCAGACGGAGCAACAAGGAGAGCGGGAACAGGCGCGCGCAAGGCAACAAAACTCGAAAAATACGGAGAGGGGACCATACGGCCGCGGACGCGAGGTGATGGTGGAGGGGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCCACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCCTACAAGAAGCACGGCTTCGGGTACCACAGCAACCGCACGAGCCGGCGTTCCATGGAGTGGCGGAGTCGCCGGCCAGAGCGTCGGCGTTGCCGCCACACGGTGACGCTGGTACAAGAAGCTGCTC]
[-] EMBL CA753298 [ATCAACAACAGCAGACCAGCAAACGAGTCTAACGATGCCCACAGCAACAGCCCGCCCGAGGATTCCCAAACAAGGTGTGTAGAGCCACAGAGACACCGAACACGGCCACGAGCTACGGTCGGCGGGGGCAGACGGAGCAACAAGGAGAGCGGGAACAGGCGCGCGCAAGGCAACAAAACTCGAAAAATACGGAGAGGGGACCATACGGCCGCGGACGCGAGGTGATGGTGGAGGGGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCCACGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCCTACAAGAAGCACGGCTTCGGGTACCACAGCAACCGCACGAGCCGGCGTTCCATGGAGTGGCGGAGTCGCCGGCCAGAGCGTCGGCGTTGCCGCCACACGGTGACGCTGGTACAAGAAGCTGCTC]
consensusID : consensus_14947#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence
[GATTGCNCCAAGCGACTTNGTCTGCTTCTTGGCCGTNGCGCCGCGCTANCACCACCTNCCACNGGTTGGGCGCCGGCCGGCANTGNTCGTGTCGTCGTCGGCGGCGGCTCNTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCNGCCGTGGNGACGCGACTACTGCGACANTGGCGCGTCGGNTGGAGGCGAACAACGTGCGGGGGTNGACGGCGGCGCTGCAAGTNCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACACAAAGGTTGTCGTC]
[+] EMBL OSS14381A [GATTGCNCCAAGCGACTTNGTCTGCTTCTTGGCCGTNGCGCCGCGCTANCACCACCTNCCACNGGTTGGGCGCCGGCCGGCANTGNTCGTGTCGTCGTCGGCGGCGGCTCNTCGTTCGTGGACAGGCTGAGGCAGATGATGATCCCGGCNGCCGTGGNGACGCGACTACTGCGACANTGGCGCGTCGGNTGGAGGCGAACAACGTGCGGGGGTNGACGGCGGCGCTGCAAGTNCGACAACTACGTCGAGAACTACATGCGCGGCCACCACTACCGCCGCGACACAAAGGTTGTCGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14947#1 ------------------------------------------------------------
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 AAATGCGACATGGTTCATGCTTGCTCGATTGATTGATTGCAATAGACAAAAACTCTTCTT 60
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 ------------------------------------------------------------
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GTCTCTTCACCTCGCCACCGGGGCCGCCATACAATTACCTCCATAAATCTTGGATAGAAT 120
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 ---------------------------------------------------------ATT 3
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GTTAGGAGTAACTAACTCTGCACTGTGCCATTGCTGTGTGTCAGTGTGTGTATATATATC 180
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 CCTCGAGCACTGTTGGCCTACTGGATAAACATCAGTAGACGACGGCGATGGCGCCCAAGC 63
consensus_14947#3 ----------------------------------------------GATTGCNCC-AAGC 13
consensus_14947#0 CAGCTGCCAGCTGCAGAGTGAAGCATAAACATCAGTAGACGACGGCGATGGCGCCCAAGC 240
consensus_14947#2 ----------------------------------------ATCAACAACAGCAGACCAGC 20
* ** ***
consensus_14947#1 GACTTG-TCTGCT--TCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGG 120
consensus_14947#3 GACTTNGTCTGCT--TCTTGGCCGTNGC-GCCGCGCTANC-ACCACCTNCCACNGGTTGG 69
consensus_14947#0 GACTTG-TCTGCT--TCTTGGCCGTGGCCGCCGCGCTAGCCACCACCTGCCACGGGTGGG 297
consensus_14947#2 AAACGAGTCTAACGATGCCCACAGCAACAGCCCGCCCGAGGATTCCCAAACAAGGTGTGT 80
* *** * * * * *** * * ** ** * *
consensus_14947#1 GCGCCGGCGCCGGCGATGT-CGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGG 179
consensus_14947#3 GCGCCGGC--CGGCANTGNTCGTGTCGTCGTCGGCGGCGGCTCN-TCGTTCGTGGACAGG 126
consensus_14947#0 GCGCCGGCGCCGGCGATGT-CGTGTCGTCGTCGGCGGCGGCGCTCTCGTTCGTGGACAGG 356
consensus_14947#2 AGAGCCACAGAGACACCGAACACG--GCCACGAGCTACGGTCGG--CGGGGGCAGACGGA 136
* * * * * * * * * ** *** ** * *** *
consensus_14947#1 CTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGACTACTGCGACAGCTGGCGC 239
consensus_14947#3 CTGAGGCAGATGATGATCCCGGCNGCCGTGGN-GACG-CGACTACTGCGACAN-TGGCGC 183
consensus_14947#0 CTGAGGCAGATGATGATCCCGGCGGCCGTGGGCGACGGCGATTACTGCGACAGCTGGCGC 416
consensus_14947#2 GCAACAAGGAGAGCGGGAACAGGCGC-GCGCAAGGCAACAAAACTCGAAAAATACGGAGA 195
* ** * * * ** * * * * * * * * * ** *
consensus_14947#1 GTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGGCGCCGCGCAAGTGCGACAAC 299
consensus_14947#3 GTCGGN-TGGAGGCGAACAACGTGCGGGGGTNGACGGCGGCGCTGC--AAGTNCGACAAC 240
consensus_14947#0 GTCGGCGTGGAGGCGAACAACGTGCGGGGGTGGACGGCGACGCCGCGCAAGTGCGACAAC 476
consensus_14947#2 GGGGACCATACGGCCGCGGACGCGAGGTGATGGTGGAGGGGGCCGC-CGCCTACGCCGAG 254
* * *** *** * ** * * * * * ** ** * ** * *
consensus_14947#1 TACGTCGAGAACTACATGCGCGGCCACCACTACCGCC-GCGACAGCAAGGTCGTCGTCGA 358
consensus_14947#3 TACGTCGAGAACTACATGCGCGGCCACCACTACCGCC-GCGACACAAAGGTTGTCGTC-- 297
consensus_14947#0 TACGTCGAGAACTACATGCGCGGCCACCACTACCGCC-GCGACAGCAAGGTCGTCGTCGA 535
consensus_14947#2 GCCGCCGTCCTCTCCG-GCGACCCCGCCGCCGACGCCCACGCCACCTGGGTGTTCGACGT 313
** ** ** * *** ** ** * **** ** ** *** *** *
consensus_14947#1 CGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAA 418
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 CGAGGCCGCCGCCTACGCCGAGGCCGCCGTCCTCTCCGGCGACCCCGCCGCCGACGCCAA 595
consensus_14947#2 CGACGAGACCGCCCTCTCCCACGTCAAGTTCCTACAAGAAGCACGGCTTCGGGTACCACA 373
consensus_14947#1 CGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAA 478
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 CGCCACCTGGGTGTTCGACGTCGACGAGACCGCCCTCTCCCACGTCAAGTTCTACAAGAA 655
consensus_14947#2 GCAACCGCACGAGCCGGCGTTCCATGGAGTGGCGGAGTCGCCGGCCAGAGCGTCGGCGTT 433
consensus_14947#1 GCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGG 538
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GCACGGCTTCGGGTACCACAGAACCGACGAGCCGGCGTTCATGGAGTGGCTGATCGCCGG 715
consensus_14947#2 GCCGCCACACGGTGACGCTGGTACAAGAAGCTGCTC------------------------ 469
consensus_14947#1 CAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGT 598
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 CAGAGCGTCGGCGTTGCCGAACACGGTGACGCTGTACAAGAAGCTGCTCCTCCTCGGCGT 775
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 CAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCAC 658
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 CAAGATCGTCTTCCTGTCGGACAGGCCGGACACGCCGGAGCTGAGGAACGCCACCGCCAC 835
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 CAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTC 718
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 CAATCTCATCAAGGAAGGCTTCGACTGCTGGGACGAGCTCATATTAAGGTCGGAGAACTC 895
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 GACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGA 778
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GACGGCGACGGGATCGGTGGTGGAGTACAAGTCGGGGGAGAGGAAGAAGCTGGAGGAGGA 955
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 GAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCC 838
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GAAGGGGATGGTGATCATCGGCAACATCGGCGACCAGTGGAGCGACCTGCTGGGCTCGCC 1015
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 GGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCG 898
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GGAGGGCCGCCGGACCTTCAAGCTGCCCAACCCTGCCTACTACATCGACAACTACAAGCG 1075
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 CGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTC 958
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 CGCCGGCGCCGCCGTCCGCGCCGCCGTAGCCATTACAGCCTCCTCCTCGTCGTCGTCGTC 1135
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 GTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCA 1018
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GTGAAGCAAACGATGCCTAGCTAGCTATAGTACTCAACTTTGAATTGCATTTTTTTTTCA 1195
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 GACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGT 1078
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 GACACATAAGTTCAGTTAATAATCGGTCGTGTACGTACCTGCCGTGCTGTGCACTGTTGT 1255
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 ATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTAAAAAAAAAAAAAAAA 1138
consensus_14947#3 ------------------------------------------------------------
consensus_14947#0 ATCTTTTTGGTGAGACGATTGAAATATCTTTGGGTTTATCTTTTATAATTGGTTTTACCG 1315
consensus_14947#2 ------------------------------------------------------------
consensus_14947#1 AAAAGGCCACAT-------------------------------------- 1150
consensus_14947#3 --------------------------------------------------
consensus_14947#0 TGAATTAATTAGGCTTGCTGCTAAAAAAAAAAAAAAAAAAAAAAAAAAGG 1365
consensus_14947#2 --------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||