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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 756 fasta sequence
[CGCGTCGCCACGCGTCGCTTTCTT-CTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG-AGGAGCTCAGCGCCGCCGCCAG-CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAATACTTCCTCCG-ATTTTAATGTATGACGCCATTGACTT-TTTAACAAAAAATTGACCTTTTGTCTTATTAAAAAAATTATGTAATTATCATTTATTTAAAAA]
[+] EMBL BM037755 [CGCGTCGCCACGCGTCGCTTTCTT CTCACTGCAACACTCTTCGGGGT CA GCAGCCAGAGCCATGCCAACCATCCTCGCCGT GCC CCAT GCCA CTTCCAGGCTCCGACGACCCTCCCGGG CCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAA GCT GCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGC CGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ]
[+] EMBL CA753866 [ CTTCCTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ]
[+] EMBL AU183304 [ tc CTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACNTTTTNTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCT ]
[+] EMBL AU075666 [ CACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGA GGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGA CTCACAGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGTTCGAGGAGTATTGCAAGGACAACCCGGAGACCGACGATTGCCGCACTAACGAAGATTGAGCCCAC ]
[+] EMBL AK103722 [ CAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ]
[+] EMBL OSC8521 [ ACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGNCGGAACGTCGTGTCGTTCGCCGGCCGCCGGNAGGGGCGCGCGCTGGGAAGGCTGGNGGTGGTGGTCGNGGCGGGNTCG NGACGNCGACGTAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGNGGAGGA ]
[+] EMBL OSS14979A [ ACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCG CGACGNCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGNGCGACCCGGA GGCGTCGAGTNCGCGGCGTCGTGGGACGAGGTGG AGGAGTTNAGCGCCGCCG CAG CCACGCGCGCGACCG AAGAAGGACAACGACCCGTTCGAGGAGTA TTNAAAGACAACCC GAGACC ACG ]
[+] EMBL OSS10336A [ ACTCTTCGNGGTGCAGGCAGCCACAGCCATGGCAACCATCCTCGCCGTGGGCGCCATGG CACATTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTANCGGTTCGCCGGAACGTCGTGTCGTTCGNCGGCCGAC GCAGGGGCGCGCGCTGGGAAGGCTTGCGGTGGTGGTCGCGGNGNGCTCG CGACGACGCCGNAGCTGGCGCAGAAGGTGTCGTAGAGCAT ]
[+] EMBL C74378 [ GCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCTGCGGGCTCG CGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCCGGCGAACCGGA GGCGGCGAGTNCNCCGC ]
[+] EMBL AU029864 [ AGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCG CGATNCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGA NGCGGCGAGTNCGCGGCGGCGTGGGACGAGGTGG ANGAGCTCAGNGCCGCCGCCAG CCACGCGCGCGACCG AAGAAGGACAGCGAACCGTTCGAGGAGTACTNCAAAGACAACCC ]
[-] EMBL AU078194 [ gaGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACAC ]
[+] EMBL AU029865 [ cCGGCGGGTTCGCCGATGCCGCCGGA NTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAAaaaaaaa ]
[+] EMBL AU182798 [ CGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCNCGGCGGCGTGGGACNAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ]
[-] EMBL C73358 [ nCGCGGTCGACCCGNAGGTCGGCGAGTGCGCGTCGTCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCAT CCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTG ]
[+] EMBL C99102 [ gnTGGNAGGAGCTCAGCGCCGCCGCCAGCCCACGCGCGCGACCGCAAG AGGACAGCGACCCGCTCGAGGAGTACTGC AGGACAACCCGGAGACCGACGAGTGCCGCA CTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAATACTCCCTCCGTATTTTAATGTATGACGCCATTGACTT TTTAACAAACGTTTGACCTTTTGTCTTATTAAAAAAATTATGTAATTATCATTTATTTAAAAA]
[+] EMBL BI798010 [ TGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTCGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTAC AAAACAAATACTTCCTCCG ATTTTAATGTATGACGCCATTGACTTCTTTAACCAAAAAaaaaa ]
[+] EMBL BI810565 [ TGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAATACTTCCTCCG ATTTTAATGTATGACGCCATTGACTT TTTAACAAAAAA ]
consensusID : consensus_14965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[CTTTGGGCGTGTAAANTTTGCTCGTNAATTGGCCTTNAGTTTGCAATAATGCGNGGGTTTTTTATGTGTCAATTACAAAAACAAAAACTCCCCTCCGTATTTTAATGTATGACGCCATTGACTTTTTAACAANCGTTTGNCCTTTTGTCTTATTAACAAAATTATGTAATTATCATTTATTTTATTGTNACTTGATTTATCATCAAATGTTCTTTAAGCATGACATAAGTATTTTTGCATTTGCATAAAAAAATTGAATAAGATGAATGATCAAACGTTGGTTAAAAAGTCAACGGCGTCATACATTAAAATACGGAGGGAGTATTCAGTAACCGCGATTGCAGGACAAGCGATCCTTTGGAATACAAATTCATACTCTGGCTTGACATTTTAGGAGCATGTGCATGAGACGATGTGCTTTTGGAATAAAAAAAAAAAAAAAA]
[+] EMBL AU075526 [CTTTGGGCGTGTAAANTTTGCTCGTNAATTGGCCTTNAGTTTGCAATAATGCGNGGGTTTTTTATGTGTCAATTACAAAAACAAAAACTCCCCTCCGTATTTTAATGTATGACGCCATTGACTTTTTAACAANCGTTTGNCCTTTTGTCTTATTAACAAAATTATGTAATTATCATTTATTTTATTGTNACTTGATTTATCATCAAATGTTCTTTAAGCATGACATAAGTATTTTTGCATTTGCATAAAAAAATTGAATAAGATGAATGATCAAACGTTGGTTAAAAAGTCAACGGCGTCATACATTAAAATACGGAGGGAGTATTCAGTAACCGCGATTGCAGGACAAGCGATCCTTTGGAATACAAATTCATACTCTGGCTTGACATTTTAGGAGCATGTGCATGAGACGATGTGCTTTTGGAATAAAAAAAAAAAAAAAA]
consensusID : consensus_14965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence
[CCCGGCCAGGGGGCGCGCCGCTTGGAAAGGCTGCCGTTTGTGTTCACGGCGGGCTCTCCGACGTCCGCCGGAGCTGCGCAGAAGGTGTCGGAGAGCATCAACAGCGGAGGAGACGTGCCGGCGACCCGGAGGCGGCGAGTGCCGCGGCAGTGGGACGAGTGGAGGAGCTCAGCGCACGCCAGCCAAGCCACGCGCGCAGACCGCAAGAAGGACAGCGACCCAGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA]
[+] EMBL BI796618 [CCCGGCCAGGGGGCGCGCCGCTTGGAAAGGCTGCCGTTTGTGTTCACGGCGGGCTCTCCGACGTCCGCCGGAGCTGCGCAGAAGGTGTCGGAGAGCATCAACAGCGGAGGAGACGTGCCGGCGACCCGGAGGCGGCGAGTGCCGCGGCAGTGGGACGAGTGGAGGAGCTCAGCGCACGCCAGCCAAGCCACGCGCGCAGACCGCAAGAAGGACAGCGACCCAGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14965#0 CGCGTCGCCACGCGTCGCTTTCTTCTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGA 60
consensus_14965#2 ------------------------------------------------------------
consensus_14965#1 ---------------------------CTTTGGGCGTGTAAANTTTGCTCGTNAATTGGC 33
consensus_14965#0 GCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTC 120
consensus_14965#2 ------------------------------------------------------------
consensus_14965#1 CTTNAGTTTGCAATAATGCGNGGGTTTTTTATGTGTCAATTACAAAAACAAAAACTCCCC 93
consensus_14965#0 CCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGC 180
consensus_14965#2 ------------------------------------------------------CCCGGC 6
consensus_14965#1 TCCGTATTTTAATGTATGACGCCATTGACTTTTTAACAANCGTTTGNCCTTTTGTCTTAT 153
consensus_14965#0 CGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACG-CC 239
consensus_14965#2 CAGGGGGCGCGCCGCTTGGAAAGGCTGCCGTTTGTGTTCACGGCGGGCTCTCCGACGTCC 66
consensus_14965#1 TAACAAAATTATGTAATTATCATTTATTTTATTGTNACT-TGATTTATCATCAAATGTTC 212
* * * ** * * * * *
consensus_14965#0 GCCGGAGCTGGCGCAGAAGGTGTCGGAGA-GCATCAAGCAGGCGGAGGAGACG--TGCGC 296
consensus_14965#2 GCCGGAGCTG-CGCAGAAGGTGTCGGAGA-GCATCAA--CAGCGGAGGAGACG--TGCC- 119
consensus_14965#1 TTTAAGCATGACATAAGTATTTTTGCATTTGCATAAAAAAATTGAATAAGATGAATGATC 272
** * * * * * * **** ** * * *** * **
consensus_14965#0 GGGCGACCCGGAGGGCGGCGAGTGC-GCGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCG 355
consensus_14965#2 -GGCGACCCGGAGG-CGGCGAGTGCCGCGGCAG--TGGGACGAG-TGGAGGAGCTCAGCG 174
consensus_14965#1 AAACGTTGGTTAAAAAGTCAACGGC-GTCATACATTAAAATACGGAGGGAGTATTCAGTA 331
** * * * * ** * * * * ** * ****
consensus_14965#0 C-CGCCGCC---AGCCACGCGCGC-GACCGCAAGAAGGACAGCGACCC-GCTCGAGGAGT 409
consensus_14965#2 CACGCCAGC-CAAGCCACGCGCGCAGACCGCAAGAAGGACAGCGACCCAGCTCGAGGAGT 233
consensus_14965#1 ACCGCGATTGCAGGACAAGCGATCCTTTGGAATACAAATTCATACTCTGGCTTGACA--T 389
*** * ** *** * * * * * *** ** *
consensus_14965#0 ACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGA 469
consensus_14965#2 ACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA--- 290
consensus_14965#1 TTTAGGAGCATGTGCATGAGAC-GATGTGCTTTTGGAATAAAAAAAAAAAAAAAA----- 443
* ** * * ***** ** * * ** ** * * *
consensus_14965#0 GCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTC 529
consensus_14965#2 ------------------------------------------------------------
consensus_14965#1 ------------------------------------------------------------
consensus_14965#0 TAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAG 589
consensus_14965#2 ------------------------------------------------------------
consensus_14965#1 ------------------------------------------------------------
consensus_14965#0 TTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAA 649
consensus_14965#2 ------------------------------------------------------------
consensus_14965#1 ------------------------------------------------------------
consensus_14965#0 AAACAAATACTTCCTCCGATTTTAATGTATGACGCCATTGACTTTTTAACAAAAAATTGA 709
consensus_14965#2 ------------------------------------------------------------
consensus_14965#1 ------------------------------------------------------------
consensus_14965#0 CCTTTTGTCTTATTAAAAAAATTATGTAATTATCATTTATTTAAAAA 756
consensus_14965#2 -----------------------------------------------
consensus_14965#1 -----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||