These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 756 fasta sequence [CGCGTCGCCACGCGTCGCTTTCTT-CTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG-AGGAGCTCAGCGCCGCCGCCAG-CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAATACTTCCTCCG-ATTTTAATGTATGACGCCATTGACTT-TTTAACAAAAAATTGACCTTTTGTCTTATTAAAAAAATTATGTAATTATCATTTATTTAAAAA] [+] EMBL BM037755 [CGCGTCGCCACGCGTCGCTTTCTT CTCACTGCAACACTCTTCGGGGT CA GCAGCCAGAGCCATGCCAACCATCCTCGCCGT GCC CCAT GCCA CTTCCAGGCTCCGACGACCCTCCCGGG CCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAA GCT GCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGC CGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ] [+] EMBL CA753866 [ CTTCCTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ] [+] EMBL AU183304 [ tc CTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACNTTTTNTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCT ] [+] EMBL AU075666 [ CACTGCAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGA GGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGA CTCACAGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGTTCGAGGAGTATTGCAAGGACAACCCGGAGACCGACGATTGCCGCACTAACGAAGATTGAGCCCAC ] [+] EMBL AK103722 [ CAACACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ] [+] EMBL OSC8521 [ ACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGNCGGAACGTCGTGTCGTTCGCCGGCCGCCGGNAGGGGCGCGCGCTGGGAAGGCTGGNGGTGGTGGTCGNGGCGGGNTCG NGACGNCGACGTAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGNGGAGGA ] [+] EMBL OSS14979A [ ACTCTTCGGGGTGCAGGCAGCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCG CGACGNCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGNGCGACCCGGA GGCGTCGAGTNCGCGGCGTCGTGGGACGAGGTGG AGGAGTTNAGCGCCGCCG CAG CCACGCGCGCGACCG AAGAAGGACAACGACCCGTTCGAGGAGTA TTNAAAGACAACCC GAGACC ACG ] [+] EMBL OSS10336A [ ACTCTTCGNGGTGCAGGCAGCCACAGCCATGGCAACCATCCTCGCCGTGGGCGCCATGG CACATTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTANCGGTTCGCCGGAACGTCGTGTCGTTCGNCGGCCGAC GCAGGGGCGCGCGCTGGGAAGGCTTGCGGTGGTGGTCGCGGNGNGCTCG CGACGACGCCGNAGCTGGCGCAGAAGGTGTCGTAGAGCAT ] [+] EMBL C74378 [ GCCAGAGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCTGCGGGCTCG CGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCCGGCGAACCGGA GGCGGCGAGTNCNCCGC ] [+] EMBL AU029864 [ AGCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCG CGATNCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGA NGCGGCGAGTNCGCGGCGGCGTGGGACGAGGTGG ANGAGCTCAGNGCCGCCGCCAG CCACGCGCGCGACCG AAGAAGGACAGCGAACCGTTCGAGGAGTACTNCAAAGACAACCC ] [-] EMBL AU078194 [ gaGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTCCCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGCCGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACAC ] [+] EMBL AU029865 [ cCGGCGGGTTCGCCGATGCCGCCGGA NTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCGCGGCGGCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAAaaaaaaa ] [+] EMBL AU182798 [ CGCCGCCGGAGCTGGCGCAGAAGGTGTCGGAGAGCATCAAGCAGGCGGAGGAGACGTGCGCGGGCGACCCGGAGGGCGGCGAGTGCNCGGCGGCGTGGGACNAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA ] [-] EMBL C73358 [ nCGCGGTCGACCCGNAGGTCGGCGAGTGCGCGTCGTCGTGGGACGAGGTGG AGGAGCTCAGCGCCGCCGCCAG CCACGCGCGCGACCGCAAGAAGGACAGCGACCCGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCAT CCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTG ] [+] EMBL C99102 [ gnTGGNAGGAGCTCAGCGCCGCCGCCAGCCCACGCGCGCGACCGCAAG AGGACAGCGACCCGCTCGAGGAGTACTGC AGGACAACCCGGAGACCGACGAGTGCCGCA CTACGAAGACTGAGCCCACACGAGCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAATACTCCCTCCGTATTTTAATGTATGACGCCATTGACTT TTTAACAAACGTTTGACCTTTTGTCTTATTAAAAAAATTATGTAATTATCATTTATTTAAAAA] [+] EMBL BI798010 [ TGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTCGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTAC AAAACAAATACTTCCTCCG ATTTTAATGTATGACGCCATTGACTTCTTTAACCAAAAAaaaaa ] [+] EMBL BI810565 [ TGTTACTGTGTTACACATTTCAGCTCTAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAGTTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAAAAACAAATACTTCCTCCG ATTTTAATGTATGACGCCATTGACTT TTTAACAAAAAA ] consensusID : consensus_14965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [CTTTGGGCGTGTAAANTTTGCTCGTNAATTGGCCTTNAGTTTGCAATAATGCGNGGGTTTTTTATGTGTCAATTACAAAAACAAAAACTCCCCTCCGTATTTTAATGTATGACGCCATTGACTTTTTAACAANCGTTTGNCCTTTTGTCTTATTAACAAAATTATGTAATTATCATTTATTTTATTGTNACTTGATTTATCATCAAATGTTCTTTAAGCATGACATAAGTATTTTTGCATTTGCATAAAAAAATTGAATAAGATGAATGATCAAACGTTGGTTAAAAAGTCAACGGCGTCATACATTAAAATACGGAGGGAGTATTCAGTAACCGCGATTGCAGGACAAGCGATCCTTTGGAATACAAATTCATACTCTGGCTTGACATTTTAGGAGCATGTGCATGAGACGATGTGCTTTTGGAATAAAAAAAAAAAAAAAA] [+] EMBL AU075526 [CTTTGGGCGTGTAAANTTTGCTCGTNAATTGGCCTTNAGTTTGCAATAATGCGNGGGTTTTTTATGTGTCAATTACAAAAACAAAAACTCCCCTCCGTATTTTAATGTATGACGCCATTGACTTTTTAACAANCGTTTGNCCTTTTGTCTTATTAACAAAATTATGTAATTATCATTTATTTTATTGTNACTTGATTTATCATCAAATGTTCTTTAAGCATGACATAAGTATTTTTGCATTTGCATAAAAAAATTGAATAAGATGAATGATCAAACGTTGGTTAAAAAGTCAACGGCGTCATACATTAAAATACGGAGGGAGTATTCAGTAACCGCGATTGCAGGACAAGCGATCCTTTGGAATACAAATTCATACTCTGGCTTGACATTTTAGGAGCATGTGCATGAGACGATGTGCTTTTGGAATAAAAAAAAAAAAAAAA] consensusID : consensus_14965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 290 fasta sequence [CCCGGCCAGGGGGCGCGCCGCTTGGAAAGGCTGCCGTTTGTGTTCACGGCGGGCTCTCCGACGTCCGCCGGAGCTGCGCAGAAGGTGTCGGAGAGCATCAACAGCGGAGGAGACGTGCCGGCGACCCGGAGGCGGCGAGTGCCGCGGCAGTGGGACGAGTGGAGGAGCTCAGCGCACGCCAGCCAAGCCACGCGCGCAGACCGCAAGAAGGACAGCGACCCAGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA] [+] EMBL BI796618 [CCCGGCCAGGGGGCGCGCCGCTTGGAAAGGCTGCCGTTTGTGTTCACGGCGGGCTCTCCGACGTCCGCCGGAGCTGCGCAGAAGGTGTCGGAGAGCATCAACAGCGGAGGAGACGTGCCGGCGACCCGGAGGCGGCGAGTGCCGCGGCAGTGGGACGAGTGGAGGAGCTCAGCGCACGCCAGCCAAGCCACGCGCGCAGACCGCAAGAAGGACAGCGACCCAGCTCGAGGAGTACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14965#0 CGCGTCGCCACGCGTCGCTTTCTTCTCACTGCAACACTCTTCGGGGTGCAGGCAGCCAGA 60 consensus_14965#2 ------------------------------------------------------------ consensus_14965#1 ---------------------------CTTTGGGCGTGTAAANTTTGCTCGTNAATTGGC 33 consensus_14965#0 GCCATGGCAACCATCCTCGCCGTGGCCGCCATGGCCACCTTCCAGGCTCCGACGACCCTC 120 consensus_14965#2 ------------------------------------------------------------ consensus_14965#1 CTTNAGTTTGCAATAATGCGNGGGTTTTTTATGTGTCAATTACAAAAACAAAAACTCCCC 93 consensus_14965#0 CCGGGGCCCCTGGCTCCTACGCTACCGGTTCGCCGGAACGTCGTGTCGTTCGCCGGCCGC 180 consensus_14965#2 ------------------------------------------------------CCCGGC 6 consensus_14965#1 TCCGTATTTTAATGTATGACGCCATTGACTTTTTAACAANCGTTTGNCCTTTTGTCTTAT 153 consensus_14965#0 CGGCAGGGGCGCGCGCTGGGAAGGCTGGCGGTGGTGGTCGCGGCGGGCTCGCCGACG-CC 239 consensus_14965#2 CAGGGGGCGCGCCGCTTGGAAAGGCTGCCGTTTGTGTTCACGGCGGGCTCTCCGACGTCC 66 consensus_14965#1 TAACAAAATTATGTAATTATCATTTATTTTATTGTNACT-TGATTTATCATCAAATGTTC 212 * * * ** * * * * * consensus_14965#0 GCCGGAGCTGGCGCAGAAGGTGTCGGAGA-GCATCAAGCAGGCGGAGGAGACG--TGCGC 296 consensus_14965#2 GCCGGAGCTG-CGCAGAAGGTGTCGGAGA-GCATCAA--CAGCGGAGGAGACG--TGCC- 119 consensus_14965#1 TTTAAGCATGACATAAGTATTTTTGCATTTGCATAAAAAAATTGAATAAGATGAATGATC 272 ** * * * * * * **** ** * * *** * ** consensus_14965#0 GGGCGACCCGGAGGGCGGCGAGTGC-GCGGCGGCGTGGGACGAGGTGGAGGAGCTCAGCG 355 consensus_14965#2 -GGCGACCCGGAGG-CGGCGAGTGCCGCGGCAG--TGGGACGAG-TGGAGGAGCTCAGCG 174 consensus_14965#1 AAACGTTGGTTAAAAAGTCAACGGC-GTCATACATTAAAATACGGAGGGAGTATTCAGTA 331 ** * * * * ** * * * * ** * **** consensus_14965#0 C-CGCCGCC---AGCCACGCGCGC-GACCGCAAGAAGGACAGCGACCC-GCTCGAGGAGT 409 consensus_14965#2 CACGCCAGC-CAAGCCACGCGCGCAGACCGCAAGAAGGACAGCGACCCAGCTCGAGGAGT 233 consensus_14965#1 ACCGCGATTGCAGGACAAGCGATCCTTTGGAATACAAATTCATACTCTGGCTTGACA--T 389 *** * ** *** * * * * * *** ** * consensus_14965#0 ACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACACGA 469 consensus_14965#2 ACTGCAAGGACAACCCGGAGACCGACGAGTGCCGCACCTACGAAGACTGAGCCCACA--- 290 consensus_14965#1 TTTAGGAGCATGTGCATGAGAC-GATGTGCTTTTGGAATAAAAAAAAAAAAAAAA----- 443 * ** * * ***** ** * * ** ** * * * consensus_14965#0 GCGCCACCAGTTCATCCCATGCTTTCGCCATTGCTGTTACTGTGTTACACATTTCAGCTC 529 consensus_14965#2 ------------------------------------------------------------ consensus_14965#1 ------------------------------------------------------------ consensus_14965#0 TAAGCAAGCTAGAGCAGCATGGCATACTGGGGTGTACACTTTGCCTCTTGGGCGTGTAAG 589 consensus_14965#2 ------------------------------------------------------------ consensus_14965#1 ------------------------------------------------------------ consensus_14965#0 TTTGATCGTTAATTTGTCTTAGTTTGCAATAATGCGAGGTTTTTTATTTGTTAATTACAA 649 consensus_14965#2 ------------------------------------------------------------ consensus_14965#1 ------------------------------------------------------------ consensus_14965#0 AAACAAATACTTCCTCCGATTTTAATGTATGACGCCATTGACTTTTTAACAAAAAATTGA 709 consensus_14965#2 ------------------------------------------------------------ consensus_14965#1 ------------------------------------------------------------ consensus_14965#0 CCTTTTGTCTTATTAAAAAAATTATGTAATTATCATTTATTTAAAAA 756 consensus_14965#2 ----------------------------------------------- consensus_14965#1 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||