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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14971#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1219 fasta sequence
[CTTTGGACGTTTCCCCATCCAGAAAAAAAAATCTTCTCAGTTACAGGATCCATCCTTAGGTGTTAGAGGCAAACCCCTCTTCTAATTCTCTCAGAGTCCTCCATAGTTCTTTCTGCTCC-TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA-CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT-CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGC-AAGAC-GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG-TTGAAGGAGAAGAATAAGCAATT-AGGACATATTAC-TTGTAATTAGTGCATCAGTATTCATGAACAT-GGAGGTGTGATGAGTTGTAACGAGGCATCTT-CTCGGATAAAT-AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAGCA--AAAAATCTCTCGGATCTTGGACTTGGAATGCACTATGAACTTTACAACATGATGTTGTGATCCAGCCATCAGTGATGTCAAGCAGTAAAACTTAGTCAATGCCAGATACTTATTTGTTGGAACCAAAAAAAAAAAAA]
[+] EMBL AK067495 [CTTTGGACGTTTCCCCATCCAGAAAAAAAAATCTTCTCAGTTACAGGATCCATCCTTAGGTGTTAGAGGCAAACCCCTCTTCTAATTCTCTCAGAGTCCTCCATAGTTCTTTCTGCTCC TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGC AAGAC GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGT ]
[+] EMBL CF296144 [ AAAATCTTCTCAGTTACAGGATCCATCCTTAGGTGTTAGAGGCAAACCCCTCTTCTAATTCTCTCAGAGTCCTCCATAGTTCTTTCTGCTCCTTTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACC ]
[+] EMBL AK062568 [ AAACCCCTCTTCTAATTCTCTCAGAGTCCTCCATAGTTCTTTCTGCTCC TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGC AAGAC GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAGCA TCAATTCTCTCGGATCTTGGACTTGGAATGCACTATGAACTTTACAACATGATGTTGTGATCCAGCCATCAGTGATGTCAAGCAGTAAAACTTAGTCAATGCCAGATACTTATT ]
[+] EMBL CF297347 [ CAGAGTCCTCCATAGTTCTTTCTGCTCC TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAA ]
[+] EMBL CF292417 [ CAGAGTCCTCCATAGTTCTTTCTGCTCC TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAG ATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGACATTGC AAGAC GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTGTTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTATTG ]
[+] EMBL CF297828 [ CAGAGTCCTCCATAGTTCTTTCTGCTCC TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGC AAGAC GGGCAGCATTTGCATTCTTTGGC ]
[+] EMBL CF197111 [ CTCC TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGNGNNNNTGC AAGACngnnngc ]
[+] EMBL AU070385 [ TTTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTA ]
[+] EMBL CF297073 [ TTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGA CACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGC AAGAC GGGCAGCATTTGCATT ]
[+] EMBL OS37924 [ ACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCTCATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGGCTGCAAAACTCTGCCGGACCACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTg ]
[-] EMBL CB682430 [ CTCGCTGCAGATAACCTGTACTGCCACAAAGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAAAGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTGCAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCAT CCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGC AAGAC GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAGCA AAAAAaagg ]
[+] EMBL AT003400 [ aggttaaTGAAAGAACCCTTGNGTNTTAAGAA GAAAACATTTTTNC ATTCTTGATGTCAGCCCAGAAG GG CCTTAAAAAGGCTCAC CCCCCGGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGG CAGCATGGGATATTGC AAG C GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTAGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAGCATCAAAAAaaaaaaaa ]
[-] EMBL CF293683 [ CCAGTAGCGGACTTTAAAGAGGCTCATCCCACCTGGTGCCGTTAATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGC AAGAC GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAGCA AAAAA ]
[+] EMBL C73811 [ AGATTGATAAAGGAATGGACAGCATGGGATATTGC AAGAC GGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTGTTTGAAGGAGAAGATTAAGCCATTAAGGACATATTACTTTGTAATTAGTGCATCAGTATCCATGAACATGGGAGGTNTGATGAGTTGTAACGAGGCATCTTCCCCGGNTAAATAAGGGCCCTAG TTGAACCTTTC ]
[-] EMBL CF297829 [ GATAAAGGAATGGACAGCATGGGATA TGCAAAGACGGGGCAGCATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCGTGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCT ATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAGCA TCAAA ]
[-] EMBL CA760219 [ TGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATCCAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGGGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGG TACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGTTCAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAATGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATTGATAAGTATGATAGAACAAGCA TCAATTCTCTCGGATCTTGGACTTGGAATGCACTATGAACTTTACAACATGATGTTGTGATCCAGCCATCAGTGATGTCAAGCAGTAAAACTTAGTCAATGCCAGATACTTATTTGTTGGAACCAAAAAAAAAAAAA]
[-] EMBL CF292418 [ CCTGAGTTCATACAAAGTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTGTTGTGGCATGTTCGACAGGAGGAACATTGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTATTGGTCCTGAATGGATACAAGAATGTGTTCCATCTGAAAGAAGGACTCTACACA AAAAAAAGGAAGGCCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGAAAATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGG ]
[-] EMBL CF296145 [ CCTACCGGCTG TTGAAGGAGAAGAATAAGCAATT AGGACATATTAC TTGTAATTAGTGCATCAGTATTCATGAACAT GGAGGTGTGATGAGTTGTAACGAGGCATCTT CTCGGATAAAT AGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCCTTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTTGTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGACCAAGCA AAAAA ]
consensusID : consensus_14971#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[GTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGACCATTGAAACCAACACAGAACTTTCTTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATTTGGATGGAGGACTTTACACATGGTTCAAGGAAGGCCTCCCGGCTGTTGAAGGAGAAGAATAAGCAATTAGGACATATTACTTGTAATTAGGGCATCAGTATTCATGAACATGGAGGTGTGATGAGTTGTAACGAGGCATTTTTTGGGATAAATAGGGCACTAGTTTGACCCTTTTTTTTTCCTTTCCCAAAAGGATATGCCTCCTTGGCCCTCCGGCCTATATGAAAATGTGTTAGATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF297072 [GTGTTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGACCATTGAAACCAACACAGAACTTTCTTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACTTGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATTTGGATGGAGGACTTTACACATGGTTCAAGGAAGGCCTCCCGGCTGTTGAAGGAGAAGAATAAGCAATTAGGACATATTACTTGTAATTAGGGCATCAGTATTCATGAACATGGAGGTGTGATGAGTTGTAACGAGGCATTTTTTGGGATAAATAGGGCACTAGTTTGACCCTTTTTTTTTCCTTTCCCAAAAGGATATGCCTCCTTGGCCCTCCGGCCTATATGAAAATGTGTTAGATTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14971#0 CTTTGGACGTTTCCCCATCCAGAAAAAAAAATCTTCTCAGTTACAGGATCCATCCTTAGG 60
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 TGTTAGAGGCAAACCCCTCTTCTAATTCTCTCAGAGTCCTCCATAGTTCTTTCTGCTCCT 120
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 TTTTTCTCATGACCACAATGCTTGCAGCTAGCTCTGTAGTGAACAGCAACCTTCCTTGCT 180
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 CATCAAGGATATCCTCCTGCTCAGACTTCACATCTGGCTACTCCTGGCGTCCTATAGAGG 240
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 CTGCAAAACTCTGCCGGACACGAGCTGTGCGCTCGCTGCAGATAACCTGTACTGCCACAA 300
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 AGCCTGCAAAGTCACCAGCTGAAGAAGAATGGAAGATCAAGAGGCAAGTGCTAGTAGAAA 360
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 AGCGGGTCCGTAGTGTTGATGTGAAGGAAGCACTGCGTCTTCAGAAGGAAAACAATTTTG 420
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 CAATTCTTGATGTCAGGCCAGTAGCGGACTTTAAAGAGGCTCATCCACCTGGTGCCGTTA 480
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 ATGTGCAAATATATAGATTGATAAAGGAATGGACAGCATGGGATATTGCAAGACGGGCAG 540
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 CATTTGCATTCTTTGGCATATTTTCTGGAACAGAAGAGAATCCTGAGTTCATACAAAGTG 600
consensus_14971#1 ---------------------------------------------------------GTG 3
***
consensus_14971#0 TTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGAACAT 660
consensus_14971#1 TTGATGAGAAACTTGGTAAAGATGCAAAGATTATTGTGGCATGTTCGACAGGAGGACCAT 63
******************************************************** ***
consensus_14971#0 TGAAACCAACACAGAACTTTCCTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACT 720
consensus_14971#1 TGAAACCAACACAGAACTTTCTTGATGGGAAGCAATCGAGGTCCCTGATAGCAGCTTACT 123
********************* **************************************
consensus_14971#0 TGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATCTGGATGGAGGACTCTACACATGGT 780
consensus_14971#1 TGTTGGTCCTGAATGGTTACAAGAATGTGTTCCATTTGGATGGAGGACTTTACACATGGT 183
*********************************** ************* **********
consensus_14971#0 TCAAGGAAGGCCTACCGGCTGTTGAAGGAGAAGAATAAGCAATTAGGACATATTACTTGT 840
consensus_14971#1 TCAAGGAAGGCCTCCCGGCTGTTGAAGGAGAAGAATAAGCAATTAGGACATATTACTTGT 243
************* **********************************************
consensus_14971#0 AATTAGTGCATCAGTATTCATGAACATGGAGGTGTGATGAGTTGTAACGAGGCATCTTCT 900
consensus_14971#1 AATTAGGGCATCAGTATTCATGAACATGGAGGTGTGATGAGTTGTAACGAGGCATTTTTT 303
****** ************************************************ ** *
consensus_14971#0 CGGATAAATAGTGCACTAGTTTGATCCTTTCTTCTTCCTTTCCCAAAAGGATATGCCTCC 960
consensus_14971#1 GGGATAAATAGGGCACTAGTTTGACCCTTTTTTTTTCCTTTCCCAAAAGGATATGCCTCC 363
********** ************ ***** ** **************************
consensus_14971#0 TTGGACCTCCTGCCTATATGAAGATGTGTTAGATTTCTCATGACCTGCTGCTGTCGACTT 1020
consensus_14971#1 TTGGCCCTCCGGCCTATATGAAAATGTGTTAGATTTTTCAAAAAAAAAAAAAAAAAAAAA 423
**** ***** *********** ************* *** * *
consensus_14971#0 GTCGGTGTATGATACTTGAGCATGCCCATTTGACAAAATAGATAAGTATGTTAGAACAAG 1080
consensus_14971#1 AAAAAA------------------------------------------------------ 429
consensus_14971#0 CAAAAAATCTCTCGGATCTTGGACTTGGAATGCACTATGAACTTTACAACATGATGTTGT 1140
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 GATCCAGCCATCAGTGATGTCAAGCAGTAAAACTTAGTCAATGCCAGATACTTATTTGTT 1200
consensus_14971#1 ------------------------------------------------------------
consensus_14971#0 GGAACCAAAAAAAAAAAAA 1219
consensus_14971#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||