cluster # 14975

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14975 cluster # 14975 Sequences # 19 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14975#0 length = 1008 sequences # 11
consensus_14975#1 length = 623 sequences # 1
consensus_14975#2 length = 602 sequences # 3

consensus_14975#3 length = 426 sequences # 1
consensus_14975#4 length = 194 sequences # 2
consensus_14975#5 length = 157 sequences # 1

consensusID : consensus_14975#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 1008
fasta sequence

                              [GCCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC-TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA-TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC-TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT-GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA-GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC-GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAAAAAAAAAA]

[+] EMBL AK061514             [GCCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTC               ]
[+] EMBL C73192               [ CCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCNAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCNTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCNAGCNAGCACAAGGAGTTCTTGCTGCGCCTGGNAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTNCTCCTGC TCGTNGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGNGTCCCCCTTCATTTTCCGACANCGTGTTCCTGGGGAGCGTCGGATCTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU162327             [  CTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCNCCCCCATCGNCGNCGTGCTGCTTANATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGANCGAGCGANNGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU057996             [     ACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAANGAGTGCCGAGAAGGCAAGCTAGGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAATGCTGG                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AK104061             [                                                              AGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAt             ]
[+] EMBL CF291967             [                                                                         GCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGGCCCATTT ATGAATATATCAACGACGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AA750754             [                                                                            CAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGAAAGCACAAGGAGTTCTTGCTGCGCCTAGAAGGAGGAGTAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTACTTCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C27787               [                                                                                   GACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTCCGGCGGCGAGCGAGCNAGCNAGCACAAGGAGTTCTTGCTGCGCCTGGNAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGNTNCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCNTGTTCCTGGGGAGCGTCGGATCTACGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU092617             [                                                                                           ACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU092680             [                                                                                                                                                                                                                                                                                                                                                    CCTTTCA TTTCCGACAGCGTGTTCCTGGGAAGCGTCGGATCTACGGGAAGAAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTTACCCAATAATCNCAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAAAAAAAAAA]
[+] EMBL AU182502             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     GCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCTGCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAA        ]




>consensus_14975#0
GCCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTG
GGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGG
TCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCT
GGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGCTCGTC
GTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCATTTCCGACAGCGTG
TTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCT
GTGAATTTTGAGTTCCAAAACTACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTT
CCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATC
AACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAG
TATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAA
GGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTG
CTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATG
TCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACC
CGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTA
TTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGT
AACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAAAAAAAAAA

consensusID : consensus_14975#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence

                              [CANCACGATGGNTNTGGACCGTGGGCTCCTCCTGCTCGTCGTCTCGNCCGCCTTCCTCGTCGGGCTNGCCTCCGCGTCCCCCTTCATTTCCNANAGCGTGTTCCTGGNGAGCGTCGGATCTACCGGGGAGGANCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACANNATANTCACANGCAAGTGCAAAGGGCCNCGGTTTCCTGCTAAACAGTTCTGCGATGCTTTCNAAGGAATTCNNATGCCCATTTAATGAATATATCNAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAANTATCCACCTGGTCTGTTTGCAAACGANTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGNATTTTCCTTTTGNGNGTAAAAAAAAAAAAAA]

[+] EMBL AU031006             [CANCACGATGGNTNTGGACCGTGGGCTCCTCCTGCTCGTCGTCTCGNCCGCCTTCCTCGTCGGGCTNGCCTCCGCGTCCCCCTTCATTTCCNANAGCGTGTTCCTGGNGAGCGTCGGATCTACCGGGGAGGANCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACANNATANTCACANGCAAGTGCAAAGGGCCNCGGTTTCCTGCTAAACAGTTCTGCGATGCTTTCNAAGGAATTCNNATGCCCATTTAATGAATATATCNAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAANTATCCACCTGGTCTGTTTGCAAACGANTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGNATTTTCCTTTTGNGNGTAAAAAAAAAAAAAA]




>consensus_14975#1
CANCACGATGGNTNTGGACCGTGGGCTCCTCCTGCTCGTCGTCTCGNCCGCCTTCCTCGT
CGGGCTNGCCTCCGCGTCCCCCTTCATTTCCNANAGCGTGTTCCTGGNGAGCGTCGGATC
TACCGGGGAGGANCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAA
ACTACANNATANTCACANGCAAGTGCAAAGGGCCNCGGTTTCCTGCTAAACAGTTCTGCG
ATGCTTTCNAAGGAATTCNNATGCCCATTTAATGAATATATCNAACGACGAGAGCAATGA
CTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAANTATCCACCTGGTCTGTT
TGCAAACGANTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGA
TAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCT
GACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAA
GTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGNATTTTCCT
TTTGNGNGTAAAAAAAAAAAAAA

consensusID : consensus_14975#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 602
fasta sequence

                              [CAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACAC-AATAAT-CACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAAAAAAAAAAAAA]

[-] EMBL CF305411             [CAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACAC AATAAT CACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAGAAAAAAAAAAA]
[+] EMBL AU057997             [                                                                        TTTTGAGTTCCAAAACTNCACAAATAATCCACAAGCAAGTGCAAAGGCCCACGGTTTCCTGCTAAACAGTGCTGCGATNCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGANCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAAA          ]
[-] EMBL CF291966             [                                                                                                                  AAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAA   AAAAAAA        ]




>consensus_14975#2
CAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAA
TTGCCCTGTGAATTTTGAGTTCCAAAACTACACAATAATCACAAGCAAGTGCAAAGGGCC
ACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGA
ATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTA
TGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTC
TTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAG
CAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGT
TATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTA
GTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGG
CTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAAAAAAAAAAA
AA

consensusID : consensus_14975#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 426
fasta sequence

                              [GAGTTCCAAAACTACCCAATAATCGCAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAAAAAAAAGTTCGTTCACGGTACCTGCCCGGGCG]

[-] EMBL BU572391             [GAGTTCCAAAACTACCCAATAATCGCAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAAAAAAAAGTTCGTTCACGGTACCTGCCCGGGCG]




>consensus_14975#3
GAGTTCCAAAACTACCCAATAATCGCAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAA
CAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAG
AGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCT
GGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCC
CAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTC
ATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATT
TATCCAAAGTTGGTGTGCTGTTGTAACCAATGAAAAAAAAGTTCGTTCACGGTACCTGCC
CGGGCG

consensusID : consensus_14975#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 194
fasta sequence

                              [AGAGGACGAGACAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGTTACTGCTACATTATGTTGCATCAAATTCATGTCATTCATGTGTAAAAAAAAAAAA]

[-] EMBL CA761155             [AGAGGACGAGACAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGTTACTGCTACATTATGTTGCATCAAATTCATGTCATTCATGTGTAAAAAAAAAAAA]
[+] EMBL AA751381             [                                       GCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGTTACTGCTACATTATGTTGCATCA                                ]




>consensus_14975#4
AGAGGACGAGACAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAAT
TTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCA
CCTTCTGTCGCTGCATTGTTACTGCTACATTATGTTGCATCAAATTCATGTCATTCATGT
GTAAAAAAAAAAAA

consensusID : consensus_14975#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 157
fasta sequence

                              [TGGTTGGTGTGTCTGTTGTATACCCATGAGGATTGAGTTCGTTCACGGTACCTTAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCCCCTTGACTACTTAAA]

[+] EMBL BI803355             [TGGTTGGTGTGTCTGTTGTATACCCATGAGGATTGAGTTCGTTCACGGTACCTTAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCCCCTTGACTACTTAAA]




>consensus_14975#5
TGGTTGGTGTGTCTGTTGTATACCCATGAGGATTGAGTTCGTTCACGGTACCTTAAGGGG
GTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGCAGAGGCTACGTA
TTATCTGGAATCTCACTTCTCCCCTTGACTACTTAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14975#1      ------------------------------------------------------------
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      ------------------------------------------------------------
consensus_14975#0      GCCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAG 60
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      ------------------------------------------------------------
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      ------------------------------------------------------------
consensus_14975#0      AGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTG 120
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      ------------------------------------------------------------
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      ------------------------------------------------------------
consensus_14975#0      GGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGG 180
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      ------------------------------------------------------------
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      ------------------------------------------------------------
consensus_14975#0      TCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCT 240
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      --------------------CANCACGATGGNTNTGGACCGTGGGCTCCTCCTGCTCGTC 40
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      ------------------------------------------------------------
consensus_14975#0      GGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGCTCGTC 300
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      GTCTCGNCCGCCTTCCTCGTCGGGCTNGCCTCCGCGTCCCCCTTCATTTCCNANAGCGTG 100
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      -----------------------------------------------------CAGCGTG 7
consensus_14975#0      GTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCATTTCCGACAGCGTG 360
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      TTCCTGGNGAGCGTCGGATCTACCGGGGAGGANCTTGCTGCAGGCCAAGAAGAATTGCCC 160
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      TTCCTGGGGAGCGTCGGATCTAC-GGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCC 66
consensus_14975#0      TTCCTGGGGAGCGTCGGATCTAC-GGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCC 419
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      TGTGAATTTTGAGTTCCAAAACTACANNATANTCACANGCAAGTGCAAAGGGCCNCGGTT 220
consensus_14975#3      ----------GAGTTCCAAAACTACCCAATAATCGCAAGCAAGTGCAAAGGGCCACGGTT 50
consensus_14975#2      TGTGAATTTTGAGTTCCAAAACTACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTT 126
consensus_14975#0      TGTGAATTTTGAGTTCCAAAACTACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTT 479
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      TCCTGCTAAACAGTTCTGCGATGCTTTCNAAGGAATTCNNATGCCCATTTAATGAATATA 280
consensus_14975#3      TCCTGCTAAACAGTGCTGCGATGCTTTCAA-GGAATTCGCATGCCCATTTAATGAATATA 109
consensus_14975#2      TCCTGCTAAACAGTGCTGCGATGCTTTCAA-GGAATTCGCATGCCCATTTAATGAATATA 185
consensus_14975#0      TCCTGCTAAACAGTGCTGCGATGCTTTCAA-GGAATTCGCATGCCCATTTAATGAATATA 538
consensus_14975#5      --------------------------------TGGTTGGTGTGTCTGTTGTATACCCATG 28
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      TCNAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 340
consensus_14975#3      TCAA-CGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 168
consensus_14975#2      TCAA-CGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 244
consensus_14975#0      TCAA-CGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 597
consensus_14975#5      AGGA---TTGAGTTCGTTCACGGTACCTTAAGGGGGTGGCTGGGCATTTTCCTTTTGCGT 85
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      AANTATCCACCTGGTCTGTTTGCAAACGA-NTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 399
consensus_14975#3      AAGTATCCACCTGGTCTGTTTGCAAACGA-GTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 227
consensus_14975#2      AAGTATCCACCTGGTCTGTTTGCAAACGA-GTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 303
consensus_14975#0      AAGTATCCACCTGGTCTGTTTGCAAACGA-GTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 656
consensus_14975#5      GTAAAATCCTTTGTAATTTATGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCCCCT 145
consensus_14975#4      --------------------AGAGGACGAGACAAGGGGGTGGCTGGGCATTTTCCTTTTG 40
                                            *   * *             *         *        

consensus_14975#1      CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 459
consensus_14975#3      CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 287
consensus_14975#2      CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 363
consensus_14975#0      CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 716
consensus_14975#5      TGA-----CTACTTAAA------------------------------------------- 157
consensus_14975#4      CGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCA---CTT 97
                        *       * *                                                

consensus_14975#1      CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 519
consensus_14975#3      CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 347
consensus_14975#2      CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 423
consensus_14975#0      CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 776
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      CTCGGTTGACTACTTAGAACTCACCTTCTGTC--GCTGCATTGT--TACTGCTACATTAT 153
                                                                                   

consensus_14975#1      TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTT 579
consensus_14975#3      TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAAAAAAAAGTTCGTT 407
consensus_14975#2      TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTT 483
consensus_14975#0      TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTT 836
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      GTTGCATCAAATTCATGTCA--TTCATGTGTAAAAAAAAAAAA----------------- 194
                                                                                   

consensus_14975#1      CACCCGGCTGGGNATTTTCCTTTTGNGNGTAAAAAAAAAAAAAA---------------- 623
consensus_14975#3      CAC-------GGTACCTGCCC---GGGCG------------------------------- 426
consensus_14975#2      CACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTA 543
consensus_14975#0      CACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTA 896
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      ------------------------------------------------------------
consensus_14975#3      ------------------------------------------------------------
consensus_14975#2      CGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAAAAAAAAAAAAA- 602
consensus_14975#0      CGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCA 956
consensus_14975#5      ------------------------------------------------------------
consensus_14975#4      ------------------------------------------------------------
                                                                                   

consensus_14975#1      ----------------------------------------------------
consensus_14975#3      ----------------------------------------------------
consensus_14975#2      ----------------------------------------------------
consensus_14975#0      TTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAAAAAAAAAA 1008
consensus_14975#5      ----------------------------------------------------
consensus_14975#4      ----------------------------------------------------