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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14976#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 707 fasta sequence
[CACAACCCAACAACCTTCCACTGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGA-GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC-CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG--AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCTTTCTTTTTTGTGATTGCCGCTTGATTTCTTGTGCCATAGGTTGTTCTTAATCTTGATCTGGGTATTCTTGTATAGAAGAAGCAATGTGCTGAATGCCTTGACCACAGAAA]
[+] EMBL AK072423 [CACAACCCAACAACCTTCCACTGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGTGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCC ]
[-] EMBL CB966667 [ ACCGTCCACTGATCCACACACAACCGCGAGGAGAGAGAAAGAGAGAGGGAGAGAGAGATGGCACCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTAT TATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGAT ]
[+] EMBL C99059 [ CCGCTGATCCACACACANCCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACTTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACG CGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAA ]
[+] EMBL BP184557 [ TGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGGATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTTCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAaaaaa ]
[+] EMBL AK062552 [ CCGCGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCTTTCTTTTTTGTGATTGCCGCTTGATTTCTTGTGCCATAGGTTGTTCTTAATCTTGATCTGGGTATTCTTGTATAGAAGAAGCAATGTGCTGAATGCCTTGACCACAGAAA]
[+] EMBL C74218 [ GCGANGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGA NTGACGGCGGCGCA NTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACG CGTCTTCGCCGGCCGCGA GNAAGCNCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCG CGACTGGGAGACCAAGTTCCAGGCCAAGTA CCCGTCGTCG CCG CT ANCGAATG AAAAAAAAAT CCCCCAAAT AAACCTTAGA TATTGTAT CTCTTGTGCTCTANAG TTAATT CAT CGTAA ]
[+] EMBL AU164008 [ CGAGGAGAGAGAAAGAGAGA GGAGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGC CGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCaaaaaaaaa ]
consensusID : consensus_14976#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 604 fasta sequence
[AGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAG-CCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT-GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL CA758832 [AGAGAGAGATGGCGGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAG CCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL C74031 [ CGGCGGA CTGACGGCGGCGCA NTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCCTACG CGTCTTCGCCGGCCGCGA GNAAGCCCGCGCGCTCGGCAAGATGTCCAAAAACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCG CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCANCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAA TTAATAATAATTCTCCCTGTGTGTCAGTGTG ]
[+] EMBL CA999656 [ CGCCGTCTTCGCCGGCCGCGAGGCCAG CCGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATT ]
consensusID : consensus_14976#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[ACGAGCTCGTGCCGAATTCGGCACGAGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCNAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACNTCNCCTCCGGCCGCGGCTTCTACNGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGANGCCAGCCGCGCGCTCGGCAAGATGTCCNAGGACGACNCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTNCCCCGTCGTCNCCCGCCTCACCGAATGAAAAAAAAAAAATCCCCCCNAATCAACCCNTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTNACTTATTATTACTTCTCCCTGTGTGTCANTGTGTCTGTGCTTGCANCTTTGCTCTCTGGTTGCTTGATTANCTGCCCNATAATCTGAACAATAANAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BE228989 [ACGAGCTCGTGCCGAATTCGGCACGAGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCNAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACNTCNCCTCCGGCCGCGGCTTCTACNGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGANGCCAGCCGCGCGCTCGGCAAGATGTCCNAGGACGACNCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCCGACTGGGAGACCAAGTTCCAGGCCAAGTNCCCCGTCGTCNCCCGCCTCACCGAATGAAAAAAAAAAAATCCCCCCNAATCAACCCNTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTNACTTATTATTACTTCTCCCTGTGTGTCANTGTGTCTGTGCTTGCANCTTTGCTCTCTGGTTGCTTGATTANCTGCCCNATAATCTGAACAATAANAAATCTGGGGAGTA ]
[+] EMBL CF331751 [ CGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCTCTTTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14976#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 560 fasta sequence
[CGAGGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCAGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCT-ACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGG-CCCCGGCGGCGC-CTA-CGCCGTCTTCGCCGG-CCGCGAGG-CCAG-CCGCGCGC-TC-GGCAAGATGTCCAA-GGACGACGCCGACGTCTCCGGCGACC-TCTCCGGCCTCTCCGA-CAAGGAGCTCGGC-GTCCTCGCCGACTGGGAGAC-CAAGTTCCAGGCCA-AGTACCCCGTCGTCGCCCGCCTCACCGAATG--AAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC-CTCTTGTGCTCTAC-AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAAAAAAAAAAAAAAAAA]
[+] EMBL BE040687 [CGAGGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCAGCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCT ACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGG CCCCGGCGGCGC CTA CGCCGTCTTCGCCGG CCGCGAGG CCAG CCGCGCGC TC GGCAAGATGTCCAA GGACGACGCCGACGTCTCCGGCGACC TCTCCGGCCTCTCCGA CAAGGAGCTCGGC GTCCTCGCCGACTGGGAGAC CAAGTTCCAGGCCA AGTACCCCGTCGTCGCCCGCCTCACCGAATGAAAAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAAAAAAAAAAAAA ]
[+] EMBL AU029345 [ GCNTACGACGGGAGCGACCCATCGAAGCCGATCTAAAGTCTCANTCCGCGGCAAGGTCTACGACGTCACCTNCGGCCGCGGCTTCTACGGCCCCCGGCGGCGCTTTACCGCCGTTTTCGCCGGCCCGCGAGGNCCAGACCGCGCGCTTC GGNAAGATGTCCAAGGGACGACGCCGACGTCTCCGGCGACN TCTCCGGCNTCTCCGA CAAGGAGCTCGGC GTCCTCGCCGACTGGGAGAC CAAGTTCCAGGCCA AGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTAAAAAAAAAAAAAAAAA]
[+] EMBL BI798858 [ GCGC TC GGCAAGATGTCCAA GGACGACGCCGACGTCTCCGGCGACC TCTCCGGCCTCTCCGACCAAGGAGCTCGGC GTCCTCGCCGACTGGGAGAC CAAGTTCCAGGCCACAGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCC ATAATCTGAACCATAAGAAATCTGGGGAGTAATTTAAGTATAAAAAAAAAA ]
[+] EMBL BI798421 [ gcagcaGC TCAGGCAAGATGTCCAA GGACGACGCCGACGTCTCCGGCGACCATCTCCGGCCTCTCCGA CAAGGAGCTCGGCAGTCCTCGCCGACTGGGAGACACAAGTT CAGGCCA AGTACCCCGTCGTCGCCCGCCTCACCGAATG AAAAAAAAAAAATCCCCCC AATCAACCCTTAGATTATTGTATCACTCTTGTGCTCTACAAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTGAACAATAAGACCTCTGGGGAGTAATTTAAGTATAAAAAAAAAA ]
[+] EMBL AU091348 [ CCCGCCTCACCGAATG AAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATTGTATC CTCTTGTGCTCTAC AGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTACTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAGCTGCCCAATAATCTNNACAATAAGAAATCTGGGGAGTAATTTAA AAAAAAA ]
consensusID : consensus_14976#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[AGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCGGCGGCTGACGGCGGCGACTCGGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCTACGCTNCTNTCGCCGGCCGCGACAGCCNGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCACCTTGGGGAGACCAAGTTCCAGGGCAAGTACCCCGTCGTCGCCCGCCTTAACCGAATTGAAAAAAAAAAATTCCCCCAAATNAACCCTTAGATTATTTGTATTCTCTTGTTGNTTTTACAAG]
[+] EMBL OSC2431 [AGAGAGAGAAAGAGAGAGGAGAGAGAGATGGCGGCGGCTGACGGCGGCGACTCGGGGCGTACGACGGGAGCGACCCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGCGGCTTCTACGGCCCCGGCGGCGCTACGCTNCTNTCGCCGGCCGCGACAGCCNGCGCGCTCGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGACAAGGAGCTCGGCGTCCTCGCACCTTGGGGAGACCAAGTTCCAGGGCAAGTACCCCGTCGTCGCCCGCCTTAACCGAATTGAAAAAAAAAAATTCCCCCAAATNAACCCTTAGATTATTTGTATTCTCTTGTTGNTTTTACAAG]
consensusID : consensus_14976#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 335 fasta sequence
[GAGNAGAGAAAGAGAGAGGAGAGAGAGATNGCNGCNGNTNACNGCNGCGCACTCGGNGCGTACGACNGGAGCGACCCATCGANGCCGATCTACNTCTCCNTCCNCGGCAAGGTCTACGACNTCACCTCCGGCCGCGGCTTCTACNGCCCCNGCNGCGCCTACNCTCTTTCGCCGGCCGCGACAGCCTGCGCGCTTCGGCAAGATGTCCAAGGACGACGNCGACGTCTCCNGCGACCTCTCCAGCCTCTCCGACAAGGAGCTCGGCGTCCTCGNCNTTGGGAGACCAAGTTCCAGGCCAAGTANCCCGTCGTCGGCCGCCTCACCGAAGTGAAAAA]
[+] EMBL AU065542 [GAGNAGAGAAAGAGAGAGGAGAGAGAGATNGCNGCNGNTNACNGCNGCGCACTCGGNGCGTACGACNGGAGCGACCCATCGANGCCGATCTACNTCTCCNTCCNCGGCAAGGTCTACGACNTCACCTCCGGCCGCGGCTTCTACNGCCCCNGCNGCGCCTACNCTCTTTCGCCGGCCGCGACAGCCTGCGCGCTTCGGCAAGATGTCCAAGGACGACGNCGACGTCTCCNGCGACCTCTCCAGCCTCTCCGACAAGGAGCTCGGCGTCCTCGNCNTTGGGAGACCAAGTTCCAGGCCAAGTANCCCGTCGTCGGCCGCCTCACCGAAGTGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14976#2 --------------------------------------------------ACGAGCTCGT 10
consensus_14976#3 --------------------------------------CGAGGAGAGAGAAAGAGAGAGG 22
consensus_14976#1 ------------------------------------------------------------
consensus_14976#4 -----------------------------------------AGAGAGAGAAAGAGAGAGG 19
consensus_14976#5 -----------------------------------------GAGNAGAGAAAGAGAGAGG 19
consensus_14976#0 CACAACCCAACAACCTTCCACTGATCCACACACAGCCGCGAGGAGAGAGAAAGAGAGAGG 60
consensus_14976#2 GCCGA-ATTCGGCACGAGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 69
consensus_14976#3 AGAGAGAGATGGCA-GCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 81
consensus_14976#1 AGAGAGAGATGGCG-GCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 59
consensus_14976#4 AGAGAGAGATGGCG-GCGG--CTGACGGCGGCG-ACTCG-GGGCGTACGACGGGAGCGAC 74
consensus_14976#5 AGAGAGAGATNGCN-GCNG--NTNACNGCNGCGCACTCG-GNGCGTACGACNGGAGCGAC 75
consensus_14976#0 AGAGAGAGATGGCG-GCGGAGCTGACGGCGGCGCAGCTGCGGGCGTACGACGGGAGCGAC 119
** * ** * * * ** ** *** * * * ********* ********
consensus_14976#2 CCATCNAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACNTCNCCTCCGGCCGC 129
consensus_14976#3 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 141
consensus_14976#1 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 119
consensus_14976#4 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 134
consensus_14976#5 CCATCGANGCCGATCTACNTCTCCNTCCNCGGCAAGGTCTACGACNTCACCTCCGGCCGC 135
consensus_14976#0 CCATCGAAGCCGATCTACGTCTCCGTCCGCGGCAAGGTCTACGACGTCACCTCCGGCCGC 179
***** * ********** ***** *** **************** ** ***********
consensus_14976#2 GGCTTCTACNGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGANGCCAGCCGCGCG 189
consensus_14976#3 GGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGCCGCGCG 201
consensus_14976#1 GGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGCCGCGCG 179
consensus_14976#4 GGCTTCTACGGCCCCGGCGGCGCTACG-CTNCTNTCGCCGGCCGCGACAGC--CNGCGCG 191
consensus_14976#5 GGCTTCTACNGCCCCNGCNGCGCCTAC-NCTCTTTCGCCGGCCGCGACAGC--CTGCGCG 192
consensus_14976#0 GGCTTCTACGGCCCCGGCGGCGCCTACGCCGTCTTCGCCGGCCGCGAGGCCAGCCGCGCG 239
********* ***** ** **** ************* * * *****
consensus_14976#2 CT-CGGCAAGATGTCCNAGGACGACNCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 248
consensus_14976#3 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 260
consensus_14976#1 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 238
consensus_14976#4 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 250
consensus_14976#5 CTTCGGCAAGATGTCCAAGGACGACGNCGACGTCTCCNGCGACCTCTCCAGCCTCTCCGA 252
consensus_14976#0 CT-CGGCAAGATGTCCAAGGACGACGCCGACGTCTCCGGCGACCTCTCCGGCCTCTCCGA 298
** ************* ******** ********** *********** **********
consensus_14976#2 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTNCCCCGTCG 307
consensus_14976#3 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCG 319
consensus_14976#1 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCG 297
consensus_14976#4 CAAGGAGCTCGGCGTCCTCGCACCTTGGGGAGACCAAGTTCCAGGGCAAGTACCCCGTCG 310
consensus_14976#5 CAAGGAGCTCGGCGTCCTCGN--CNTTGGGAGACCAAGTTCCAGGCCAAGTANCCCGTCG 310
consensus_14976#0 CAAGGAGCTCGGCGTCCTCGC-CGACTGGGAGACCAAGTTCCAGGCCAAGTACCCCGTCG 357
******************** ****************** ***** *******
consensus_14976#2 TCNCCCGCCTCA-CCGAATGAAAAAAAAAAAATCCCCCCNAATCAACCCNTAGATTATT- 365
consensus_14976#3 TCGCCCGCCTCA-CCGAATGAAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT- 377
consensus_14976#1 TCGCCCGCCTCA-CCGAATGAAAAAAAAAAA-TCCCCCCAAATCAACCCTTAGATTATT- 354
consensus_14976#4 TCGCCCGCCTTAACCGAATTGAAAAAAAAAAATTCCCCCAAATNAACCCTTAGATTATTT 370
consensus_14976#5 TCGGCCGCCTCA-CCGAAGTGAAAAA---------------------------------- 335
consensus_14976#0 TCGCCCGCCTCA-CCGAA-TGAAAAAAAAAAATCCCCCCAAATCAACCCTTAGATTATT- 414
** ****** * ***** *****
consensus_14976#2 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTNACTTATTATTA 425
consensus_14976#3 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTA 437
consensus_14976#1 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTA 414
consensus_14976#4 GTATTCTCTTGTTGNTTTTACAAG------------------------------------ 394
consensus_14976#5 ------------------------------------------------------------
consensus_14976#0 GTATCCTCTTGTGCTCTACAGCTTAATTCCATCCGTAATTCCATGTGTAACTTATTATTA 474
consensus_14976#2 CTTCTCCCTGTGTGTCANTGTGTCTGTGCTTGCANCTTTGCTCTCTGGTTGCTTGATTAN 485
consensus_14976#3 CTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAG 497
consensus_14976#1 CTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAG 474
consensus_14976#4 ------------------------------------------------------------
consensus_14976#5 ------------------------------------------------------------
consensus_14976#0 CTTCTCCCTGTGTGTCAGTGTGTCTGTGCTTGCAGCTTTGCTCTCTGGTTGCTTGATTAG 534
consensus_14976#2 CTGCCCNATAATCTGAACAATAANAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGG 545
consensus_14976#3 CTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTA------------- 544
consensus_14976#1 CTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTANNNNNNNNNNNNN 534
consensus_14976#4 ------------------------------------------------------------
consensus_14976#5 ------------------------------------------------------------
consensus_14976#0 CTGCCCAATAATCTGAACAATAAGAAATCTGGGGAGTAATTTAAGTATTGGATTGTCTGG 594
consensus_14976#2 TCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------- 595
consensus_14976#3 --AAAAAAAAAAAAAAAA------------------------------------------ 560
consensus_14976#1 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 594
consensus_14976#4 ------------------------------------------------------------
consensus_14976#5 ------------------------------------------------------------
consensus_14976#0 TCTTTCTTTTTTGTGATTGCCGCTTGATTTCTTGTGCCATAGGTTGTTCTTAATCTTGAT 654
consensus_14976#2 -----------------------------------------------------
consensus_14976#3 -----------------------------------------------------
consensus_14976#1 NNNNNNNNNN------------------------------------------- 604
consensus_14976#4 -----------------------------------------------------
consensus_14976#5 -----------------------------------------------------
consensus_14976#0 CTGGGTATTCTTGTATAGAAGAAGCAATGTGCTGAATGCCTTGACCACAGAAA 707
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||