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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 969 fasta sequence
[GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTC-TGGTTACATGGGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGGCGTTGACCCGAGACTGAAGGGCGAGTATCCCCCAAAAGGGGTTGCCAAGCTCGCAGCGG-TGGGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGA-TGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCCATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCTTTTGGTGTGTGCCTACGTGAGAGGATGATGGTTCTTCACTTTGTTAACATGTGAGTTATGAATGGATGCTTTTG]
[+] EMBL AU162536 [GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTC TGGTTACATGGGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGGCGTTGACCCGAGACTGAAGGGCGAGTATCCCCCAAAAGGGGTTGCCAAGCTCGCAGCGG TGGGCGGCACTCTGTGTGCAATACGAGTCTG ]
[+] EMBL AU065436 [GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTTGGTTACATGGGCAACACCTCGTTTG CAGGGGNCACTGTG AACAATGCGGTTGGCCCGGGACT NAGGGCGGGTATCCCC AAAGGGGTT CC AG TTG AACGGTTGGGNGG AATTTGTTTGCNATACGgg ]
[-] EMBL BU673193 [ AGGGCGAGTATCCCCCCAAAGGGGTTGCCAAGCTCGCACCGG T GGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGA TGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCCATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCA ]
[+] EMBL CA767435 [ CCCCAAAAGGGGTTGCCAAGCTCGCAGCGG T GGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAACATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACTGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGA TGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCTTTTGGTGTGTGCCTACGTGAGAGGATGATGGTTCTTCACTTTGTTAACATGTGAGTTATGAATGGATGCTTTTG]
[+] EMBL BI796084 [ TCCGAGTTTCAACATGGAGTGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTT CCCATTGGTTACCATGCCGTTTAAGTACTGTTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTC GCAAA TTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCATG ]
consensusID : consensus_14979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 724 fasta sequence
[TTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCTGCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAAGGGCTAGAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCC-AGTATGCCATGACTGGGGCCGGTTGACTCAAAAAAAGCGCCGGCTATAGTTTTGG--AG-TGGTCTTCTA-AGCCTCTTACCGGGAAGG-AACCCGTAGATCCACATGCCTTGGGCACCAAGCTGGTCATGGGCACACCTCGTTGCAAGACCTGGGAACAATGCGTGGCCGATCTGAAGGCAGTTCCCCAAAAGGGT]
[+] EMBL OSR22781A [TTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCTGCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGACct ]
[+] EMBL BU572332 [ GGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTTTGCATGATATTTTGCATGGAAGAAAGGGTGT CCTGGTGCACAACCT GCCCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAA GGCTAGAATATCTTCATGAGAAGG CC ACCTTCTATAGTCCATCGGG CATACGCTCTAGCAATGTTCTTCTATTTGAGGACT CAAAGCCAAAATTGCAGATTTCAATCC TCAAATAAGACTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCC AGTATGCCATGACTGGGGCCGGTTGACTCAAAAAAAGCGCCGGCTATAGTTTTGG AG TGGTCTTCTA AGCCTCTTACCGGGAAGG AACCCGTAGATCCACATGCCTTGGGCACCAAGCTGGTCATGGGCACACCTCGTTGCAAGACCTGGGAACAATGCGTGGCCGATCTGAAGGCAGTTCCCCAAAAGGGT]
[+] EMBL CF314910 [ TGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCTGCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAAGGGCTAGAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACT GGCCAGTTGACTC AGAAAAGTGATGTATATAGTTTGGGAAAGTTGTTCTTCTAGAGCTTC TAACAGGAAGGAAACCAGTA ]
[+] EMBL BU673930 [ CCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAAGGGCTAGAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCA ]
consensusID : consensus_14979#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 504 fasta sequence
[GCTCGCCAGCCGTTGGCGGCACTCCTGTGTGCAAATACGAGTCTGGAGTTTAG-CCCAA--GCATG-AGCATTGTGGTC-AAGGC-NC-TCTCCCCTCTTCTCCAGCATAAAC-CGCCACCGCCACCAGCCGTTGCT-CCTGAGACCTGAGCTCCAGATT-CAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG-CGGTGGTGATCACC-GAATAATCTTGTTCT-GAGTTGAACTGT-GACATGGGAAGGTTCT-AAATCTAA-CTGTTCATGGCTTGACAAAAAAAAAAAAAAA]
[+] EMBL AU032291 [GCTCGCCAGCCGTTGGCGGCACTCCTGTGTGCAAATACGAGTCTGGAGTTTAGACCCAA GCATG AGCATTGTGGTCAAAGGCACC TCTCCCCTCTTCTCCAGCATAAAC CGNCACCGCCACCAGCCGTAGCTCCCTGAGACCTGAGCTCCAGATTCCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTNCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTCT GAGTTGAACTGT GACATGGGAAGGTTCT AAATCTAA CTGTTCATGGCTTGACAAAAAAAAAAAAAAA]
[+] EMBL AT003638 [ tnAGTTTAG CCCAA GCATG AGCATTGTGGTC AAGGC NC TTTTCCCTCTTCTCCAGCATAAAC CGCCACCGCCACCAGCCGTTGCT CCTGAGACCTGAGCTCCAGATT CAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTCT GAGTTGAACTGT GCCATGGGAAGGTTCT AAATCTAA CTGTTCATGGCTTGACATGCAAAAAAAAAAA]
[+] EMBL AT003753 [ TTTAG ACCAAAGGCATGAAGCAATGTGGTC AAGGC GCTTCTCCCCTCNTNTCCAGCATAAACNGGCCACCACCNCCAGCCGTTGNT CCTGAG CCTGAGCTCCANATT CAACTGCTTNTTATGCNTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGAATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAANTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTCT GAGTTGAACTGT GACATGGGAAGGTTCT AAATCTAA CTGTTCATGGCTTGACATGCAAAAAAAAAAA]
[+] EMBL AU167014 [ aC TCTCCCCTCTTNTCCAGCATAAAC CGCCACCGCCACCAGCCGTTGCT CCTGAGACCTGAGCTCCAGATT CAACTGCTTNTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTNTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTNT GAGTTGAACTGT GACATGGGAAGGTTNT AAATNTAA CTGTTCATGGCTTGGCAAAAAAAAAAAAAAA]
[-] EMBL CB967293 [ gcCAAAGTTGTGTTTTTAGCTGCCCAGCCGGTGGTGATCACCNGAATAATCTTGTTCTGGAGTTGAACTGTNGACATGGGAAGGTTCTGAAATCTAANCTGTTCATG ]
consensusID : consensus_14979#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[CATTGTGGTCAAGGCACTTTCCCCTTTTTTCCAGCATAAACCGCCACCGCCACCAGCCGTTGTTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTTTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGGGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCCCCGAATAATCTTGTTTTGAGTTGAACTGTGACATGGGAAGGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF314911 [CATTGTGGTCAAGGCACTTTCCCCTTTTTTCCAGCATAAACCGCCACCGCCACCAGCCGTTGTTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTTTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGGGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCCCCGAATAATCTTGTTTTGAGTTGAACTGTGACATGGGAAGGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14979#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence
[TANAAAATAANCCNCCCCCCCCCCCNCCCGNTGNTCTTNANCCCTGNGCTCCANATNCACCNGNTTCTTAGGCTTTTNCTTCCGNGTTTCACCNGGGNNGTAAANAGGAATGGAATTTTTTCANCGGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCANCGGTGGTGATCNCCGAATANTCNTGTTNTGAGTTGAACTGCCNCATCNCGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCAAAAAAAA]
[+] EMBL AT003715 [TANAAAATAANCCNCCCCCCCCCCCNCCCGNTGNTCTTNANCCCTGNGCTCCANATNCACCNGNTTCTTAGGCTTTTNCTTCCGNGTTTCACCNGGGNNGTAAANAGGAATGGAATTTTTTCANCGGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCANCGGTGGTGATCNCCGAATANTCNTGTTNTGAGTTGAACTGCCNCATCNCGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCAAAAAAAA]
consensusID : consensus_14979#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[TTTTGCTCCCAAAAGTGATGATCCCACAAAAGCACCTCCTCCCATTGAAGTACCAGAATTATCATTTGATGAACTGAAAGAGAAGACTGATAATTTTGGTTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAAAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTTGTCAAGATAAAGACATTGAAAATTTTTGTGTGAAATGCTTGCGTTACTAGTGTTGGAAGAGAAATCAAACGCCCTAATGTGCCTAACGAATAATGTCTAACGAATAGGGTTACTATTGACATAGATAATATTAGGCATTGGAATAGAATCAGGGGTTGTT]
[+] EMBL CA752972 [TTTTGCTCCCAAAAGTGATGATCCCACAAAAGCACCTCCTCCCATTGAAGTACCAGAATTATCATTTGATGAACTGAAAGAGAAGACTGATAATTTTGGTTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAAAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTTGTCAAGATAAAGACATTGAAAATTTTTGTGTGAAATGCTTGCGTTACTAGTGTTGGAAGAGAAATCAAACGCCCTAATGTGCCTAACGAATAATGTCTAACGAATAGGGTTACTATTGACATAGATAATATTAGGCATTGGAATAGAATCAGGGGTTGTT]
consensusID : consensus_14979#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence
[CTCTCAACCTGGCCACACTTGCTGGATGCAGACGAGTGAGAATTGCTATTGATGCTGCTAAAGGCTAGAAAATCTTCATAAGAAGGGCAACCTTCTATAGTCCATCGGGACATACACTCTAACAATGTCTTCTATTGNGACTCCAAACCAAAATTGCAGATTTCAATCCTCAAATAAGCTTCATATATGGCTGGTCGCTTGACTCACTCATGTCCTTGGAACCCTCGTTGTTATGCACCCGAGATTGCCATGATTGGCCAGTTGGCTCAAAAAAAGAGTTGATATATAGTTTTGGAGTTGGTCCCCCCCCCCCCTTAACCGGGGGGAACCCGCAATACCCCT]
[+] EMBL BU572333 [CTCTCAACCTGGCCACACTTGCTGGATGCAGACGAGTGAGAATTGCTATTGATGCTGCTAAAGGCTAGAAAATCTTCATAAGAAGGGCAACCTTCTATAGTCCATCGGGACATACACTCTAACAATGTCTTCTATTGNGACTCCAAACCAAAATTGCAGATTTCAATCCTCAAATAAGCTTCATATATGGCTGGTCGCTTGACTCACTCATGTCCTTGGAACCCTCGTTGTTATGCACCCGAGATTGCCATGATTGGCCAGTTGGCTCAAAAAAAGAGTTGATATATAGTTTTGGAGTTGGTCCCCCCCCCCCCTTAACCGGGGGGAACCCGCAATACCCCT]
consensusID : consensus_14979#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[GCAGCCGGTGGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTAAAAAAAAAAAAA]
[+] EMBL C22590 [GCAGCCGGTGGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14979#2 ------------------------------------------------------------
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 ------------------------------------------------------------
consensus_14979#0 GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAAT 60
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 ------------------------------------------------------------
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ------------------------------------------------------------
consensus_14979#2 ------------------------------------------------------------
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 ------------------------------------------------------------
consensus_14979#0 GTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCT 120
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 ------------------------------------------------------------
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ------------------------------------------------------------
consensus_14979#2 ------------------------------------------------------------
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 ------------------------------------------------------------
consensus_14979#0 CCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCT 180
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 ------------------------------------------------------------
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ------------------------------------------------------------
consensus_14979#2 ------------------------------------------------------------
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 ------------------------------------------------------------
consensus_14979#0 CCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTT 240
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 ---------------------------------------------------------TTC 3
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ------------------------------------------------------------
consensus_14979#2 ------------------------------------------------------------
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 ------------------------------------------------------------
consensus_14979#0 GTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAG 300
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 AAAGGCTTTAGTTGGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGG 63
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ------------------------------------------------------------
consensus_14979#2 ------------------------------------------------------------
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 ------------------------------------------------------------
consensus_14979#0 CAGAGTCTGGTTACATGGGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGGCGT 360
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 AAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTT 123
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ------------------------------------------------------------
consensus_14979#2 --------------------------------------------GCTCGCCAGCCGTTGG 16
consensus_14979#7 -------------------------------------------------GCAGCCGGTGG 11
consensus_14979#3 ------------------------------------------------------------
consensus_14979#0 TGACCCGAGACTGAAGGGCGAGTATCCCCCAAAAGGGGTTGCCAAGCTCGCAGCGGTGGG 420
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 TTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGG 183
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ------------------------------------------------------------
consensus_14979#2 CGGCACTCCTGTGTGCAAATACGAGTCTGGAGTTTAGCCCAAGCATGAGCATTGTGGTCA 76
consensus_14979#7 CGGCACTC-TGTGTGCAA-TACGAGTCTG-AGTTTAGACCAAGCATGAGCATTGTGGTCA 68
consensus_14979#3 -------------------------------------------------CATTGTGGTCA 11
consensus_14979#0 CGGCACTC-TGTGTGCAA-TACGAGTCTG-AGTTTAGACCAAGCATGAGCATTGTGGTCA 477
consensus_14979#4 ------------------------------------------------------------
consensus_14979#1 TTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCT 243
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 ---------------------------------------------------TTTTGCTCC 9
consensus_14979#2 AGGCNCTCTCCCCTCTTCTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGCTCCTG- 133
consensus_14979#7 AGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGCTCCTG- 125
consensus_14979#3 AGGCACTTTCCCCTTTTTTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGTTCCTG- 68
consensus_14979#0 AGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGCTCCTG- 534
consensus_14979#4 ------------------TANAAAATAANCCNCCCCCCC--CCCCNCCCGNTGNTCTTN- 39
consensus_14979#1 GCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGA 303
consensus_14979#6 ------------------------------------CTCTCAACCTGGCC--ACACTTG- 21
consensus_14979#5 CAAAAGTGATGATCCCACAAAAGCACCTCCTCCCATTGAAGTACCAGAATTATCATTTG- 68
** *
consensus_14979#2 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 193
consensus_14979#7 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 185
consensus_14979#3 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 128
consensus_14979#0 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 594
consensus_14979#4 ANCCCTGNGCTCCANATNCACCNGNTTCTTAGGCTTTTNCTTCCGNGTTTCACCNGGGNN 99
consensus_14979#1 CTGGATGCAG-CGAGTGAGAATTGCTATTGATGCTGCTAA---AGGGCTAGAATATCTTC 359
consensus_14979#6 CTGGATGCAGACGAGTGAGAATTGCTATTGATGCTGCTAA---AGG-CTAGAAAATCTTC 77
consensus_14979#5 ATGAACTGAA---AGAGAAGACTGATAATTTTGGTTCAAA---GGCTTTAGTTGGTGAAG 122
* * * * * * * *
consensus_14979#2 GTAAAGAGGGATGGAATTTCTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCA 250
consensus_14979#7 GTAAAGAGGGATGGAATTTCTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCA 242
consensus_14979#3 GTAAAGAGGGATGGAATTTTTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCA 185
consensus_14979#0 GTAAAGAGGGATGGAATTTCTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCC 651
consensus_14979#4 GTAAANAGGAATGGAATTTTTTCANCGGGTCCCTGTCGTTACTGTTTCATGCT--TGCCA 157
consensus_14979#1 -ATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTA 418
consensus_14979#6 -ATAAGAAGGGC-AACCTTCTATAGTCCATCGGGACATACACTCTAACAATGT-CTTCTA 134
consensus_14979#5 GATCATATGGAAAAGTGTATTATGCTAC-TCTAGACA---ACGGAAAGCAAGT--TGCTG 176
* * * * * ** * * * *
consensus_14979#2 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 310
consensus_14979#7 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 302
consensus_14979#3 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 245
consensus_14979#0 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 711
consensus_14979#4 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 217
consensus_14979#1 TTTGAGGACTACAAAGCAAAAATTGCAGATTT-CAATCCTTCAAATCAGTCTCC-----T 472
consensus_14979#6 TT--GNGACTCCAAA-CCAAAATTGCAGATTT-CAATCCT-CAAATAAGCTTCA-----T 184
consensus_14979#5 TTAAAAAGCTTGATGCTTCAA----CAGAACC-TGAGGTTGATAATGA-TTTTT-----T 225
* * ** * * * *** * *
consensus_14979#2 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGC 370
consensus_14979#7 TAAAAAAAAAAAAA---------------------------------------------- 316
consensus_14979#3 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGGGCTTATGCTGAGTGCTGTGCTGC 305
consensus_14979#0 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGC 771
consensus_14979#4 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGC 277
consensus_14979#1 GATAT---GGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAA-CCTTCGGCTATCATGC 528
consensus_14979#6 -ATAT---GGCTGGTCGCTTG-ACTCA-CTCATGTCCTTGGAA-CCCTCG-TTGTTATGC 236
consensus_14979#5 GACAC---AGGTGTCCATTGTTGTCAAGATAAAGACATTGAAAATTTTTGTGTGAAATGC 282
* *
consensus_14979#2 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATC 430
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCCCCGAATAATC 365
consensus_14979#0 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATC 831
consensus_14979#4 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCANCGGTGGTGATCNCCGAATANTC 337
consensus_14979#1 TCCCAGTAT----GCCATGACTGGGGCCGGTTGACTCAAAAAAAGCGCCGGC-TATAGTT 583
consensus_14979#6 ACCCGAGATT---GCCATGATTGG--CCAGTTGGCTCAAAAAAAGAGTTGATATATAGTT 291
consensus_14979#5 TTGCGTTACTAGTGTTGGAAGAGAAATCAAACGCCCTAATGTGCCTAACGAATAATGTCT 342
consensus_14979#2 TTGTTCTGAGTTGAACTGTGACATGG-GAAGGTTCTAAATCTAACTGTTCATGGCTTGAC 489
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 TTGTTTTGAGTTGAACTGTGACATGG-GAAGGTTTTAAATTTAAAAAAAAAAAAAAAAAA 424
consensus_14979#0 TTGTTCTGAGTTGAACTGTGACATGG-GAAGGTTCTAAATCTAACTGTTCATGGCTTGAC 890
consensus_14979#4 NTGTTNTGAGTTGAACTGCCNCATCNCGAAGGTTCTAAATCTAACTGTTCATGGCTTGAC 397
consensus_14979#1 TTGGAGT-GGTCTTCTAAGCCTCTTACCGGGA--AGGAACCCGTAGATCCACATGCCTTG 640
consensus_14979#6 TTGGAGTTGGTCCCCCCCCCCCCTTAACCGGG--GGGAACCCGCAATACCCCT------- 342
consensus_14979#5 AACGAATAGGGTTACTATTGACATAGATAATATTAGGCATTGGAATAGAATCAGGGGTTG 402
consensus_14979#2 AAAAAAAAAAAAAAA--------------------------------------------- 504
consensus_14979#7 ------------------------------------------------------------
consensus_14979#3 AAAAAAAAA--------------------------------------------------- 433
consensus_14979#0 ATGCTTTTGGTGTGTGCCTACGTGAGAGGATGATGGTTCTTCACTTTGTTAACATGTGAG 950
consensus_14979#4 ATGCAAAAAAAA------------------------------------------------ 409
consensus_14979#1 GGCACCAAGCTGGTCATGGGCACACCTCGTTGCAAGACCTGGGAACAATGCGTGGCCGAT 700
consensus_14979#6 ------------------------------------------------------------
consensus_14979#5 TT---------------------------------------------------------- 404
consensus_14979#2 ------------------------
consensus_14979#7 ------------------------
consensus_14979#3 ------------------------
consensus_14979#0 TTATGAATGGATGCTTTTG----- 969
consensus_14979#4 ------------------------
consensus_14979#1 CTGAAGGCAGTTCCCCAAAAGGGT 724
consensus_14979#6 ------------------------
consensus_14979#5 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||