These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1566 fasta sequence [CGGACTCCTCCGCCGCCGCGTCCCCCGTCTCTCTCGACGACGCCTCGACTGACGAGAGGAGGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGAGGGCGAGGAAGAGGAGGAGGCTTGTGCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCAT-GTTGAAT-CCA-TTGACATGGCAAATGATCTGCACTCTA-TTGGT-GGATTAGA-TCCCCTACTT-GGTT-AC-TTGAAAAATTCACATGC-TGGCATCAGAGCAAAGGCTGCAGAGGTTGTGAGCACGATTGTGCAAAATAACCCCAAGAGCCAGCAACTTGTCATGGAATCTAATGGCCTGGAGCCACTGTTGACAAACTTCAGTTCCGATGCAAGCACGAATTCACGCACAAAAGCTCTTGGAGCAATATCATCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAGTACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTC-TTCCAAAGCTGATGATG-CACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTG-TTAC-AA-CGA-G-CCGTCGTC-TCT-C-AGGGA-G-AAGGGT-CTT-GTT-GTGCTTCCTGGAGAGGATGCACCTCAACAG-CCA-CCACCGGATGTCGTTGGCAGCATGTTTGAG-CCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCCACGAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK101448 [CGGACTCCTCCGCCGCCGCGTCCCCCGTCTCTCTCGACGACGCCTCGACTGACGAGAGGAGGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGAGGGCGAGGAAGAGGAGGAGGCTTGTGCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGGGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCAT GTTGAAT CCA TTGACATGGCAAATGATCTGCACTCTA TTGGT GGATTAGA TCCCCTACTT GGTT AC TTGAAAAATTCACATGC TGGCATCAGAGCAAAGGCTGCAGAGGTTGTGAGCACGATTGTGCAAAATAACCCCAAGAGCCAGCAACTTGTCATGGAATCTAATGGCCTGGAGCCACTGTTGACAAACTTCAGTTCCGATGCAAGCACGAATTCACGCACAAAAGCTCTTGGAGCAATATCATCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAGTACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTC TTCCAAAGCTGATGATG CACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTG TTAC AA CGA G CCGTCGTC TCT C AGGGA G AAGGGT CTT GTT GTGCTTCCTGGAGAGGATGCACCTCAACAG CCA CCACCGGATGTCGTTGGCAGCATGTTTGAG CCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTAT ] [+] EMBL CB648677 [ CGACGCCTCTACTGACGAGAGGAGGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGAGGGCGAGGAAGAGGAGGAGGCTTGTGCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCAT GTTGAAT CCA TTGACATGGCAAATGATCTGCACTCTA TTGGT GGATTAGA TCCCCTACTT GGTT AC TTGAAAAATTCACATGC TGGCATCAGAGCAAAGGCTGCAGAGGTTGTGAGCACGATTGTGCAAAATAACCCCAAGAGCCAGCAACTTGTCATGGAATCTAATGGCCTGGAGCCACTGTTGACAAACTTCAGTTCCGATGCAAGCACGAATTCACGCACAAAAGCTCTTGGAGCAATATCATCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGNTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTAC ] [+] EMBL CB648679 [ CGACGCCTCGACTGACGAGAGGAGGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGAGGGCGAGGAAGAGGAGGAGGCTTGTGCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCAT GTTGAAT CCA TTGACATGGCAAATGATCTGCACTCTA TTGGT GGATTAGA TCCCCTACTT GGTT AC TTGAAAAATTCACATGC TGGCATCAGAGCAAAGGCTGCAGAGGTTGTGAGCACGATTGTGCAAAATAACCCCAAGAGCCAGCAACTTGTCATGGAATCTAATGGCCTGGAGCCACTGTTGACAAACTTCAGTTCCGATGCAAGCACGAATTCACGCACAAAAGCTCTTGGAGCAATATCATCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAA ] [+] EMBL CB649073 [ CGACGCCTCTACTGACGAGAGGAGGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGAGGGCGAGGAAGAGGAGGAGGCTTGTGCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCAT GTTGAAT CCA TTGACATGGCAAATGATCTGCACTCTA TTGGT GGATTAGA TCCCCTACTT GGTT AC TTGAAAAATTCACATGC TGGCATCAGAGCAAAGGCTGCAGAGGTTGTGAGCACGATTGTGCAAAATAACCCCAAGAGCCAGCAACTTGTCATGGAATCTAATGGCCTGGAGCCACTGTTGACAAACTTCAGTTCCGATGCAAGCACGAATTCACGCACAAAAGCTCTTGGAGCAATATCATCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGTTCT ] [+] EMBL C28534 [ GCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCATNTTTGAATCCCATTTGACATGGC AATGATCTNCACTCTATTTGGT GGATTAGATTCCCCTACTTGGGTTAAT TTGAAAAATTCCCATNCTTGGCAT ] [+] EMBL AU068107 [ CGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCAT GTTGAAT CCA TTGACATGGCAAATGATCTGCACTCTA TTGGT GGATTAGA TCCCCTACTT GGTT AC TTGAAAAATT ] [+] EMBL C72387 [ TGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGG GACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCAT GTTGAAT CCA TTGACATGGCAAATGATCTGCACTCTA TTGGTGGGATTAGA TNCCCTACTTGGGTT ACTTTGAAA ] [+] EMBL CF303745 [ AAACTTCAGTTCCGATGCAAGCACGAATTCACGCACAAAAGCTCTTGGAGCAATATCATCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAGTACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTC TTCCAAAGCTGATGATG CACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTG TTAC AA CGA G CC ] [-] EMBL CB648680 [ TCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAGTACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTC TTCCAAAGCTGATGATG CACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTG TTAC AA CGA G CCGTCGTC TCT C AGGGA G AAGGGT CTT GTT GTGCTTCCTGGAGAGGATGCACCTCAACAG CCA CCACCGGATGTCGTTGGCAGCATGTTTGAG CCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGGAGATGAAAGATACTTATCTCTTCCACGATTTAAAAAAAAgga ] [+] EMBL AU082655 [ CAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTC TTCCAAAGCTGATGATGCCACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAANTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTN TTAC AA CGA G CCGTCGTC TCT C AGGGA G AAGGGT CTT GTT GTGCTTCCTGGAGAGGATGCACCTCAACAG CCA CCACCGGATGTCGTTGGCAGCATGTTTGAG CCGCC CTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATAAAAA AAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB648678 [ GGCTGATAGGAGTGTTGCTACAGAGCTTGGTC TTCCAAAGCTGATGATG CACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTG TTAC AA CGA G CCGTCGTC TCT C AGGGA G AAGGGT CTT GTT GTGCTTCCTGGAGAGGATGCACCTCAACAG CCA CCACCGGATGTCGTTGGCAGCATGTTTGAG CCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATAAGGAGATGAAAGATACTTATCTCTTCCCCGATTAAAAAAAAAga ] [+] EMBL AU068108 [ aaGCTGATAGGAGTNTTCCTACAGAGTTTGGTCTTTCCAAAGCTGATGATG CACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTNCCTTAGGTGGTCTTCTCGAG TGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTG TTAC AA CGA G CCGTCGTC TCT C AGGGA G AAGGGT CTT GTT GTGCTTCCTGGAGAGGATGCACNTCAACAG CCA CCACCGGATGTCGTTGGCAGCATGTTTGAN CCGC CTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCCACGAAAAAAA ] [-] EMBL CA763306 [ GCTTGGTC TTCCAAAGTTGTTGATG CACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGCCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGCGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCCCAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTG TTAC AA CGA G CCGTCGTC TCT C AGGGA G AAGGGT CTT GTT GTGCCCCCTGGAGAGGATGCCCCTCAACAG CCC CCCCCGGATGTCGTTGGCAGCATGTTTGAG CCCCCGCTTCGCGCTTGGGCAGCATCAAGGCCCCCTCCCAAAGAAGATTCAGAGTCTGAGAGCCCCAAGAAGGATCCCCCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTTGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCCAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL AU182266 [ GGACTCCCTCTGGAAGGAGTG TTACAAA CGA G CCGTCGTC TCT C AGGNA G AAGGGT CTT GTT GTGCTTCCTGGANAGGATGCACCTCAACAG CCA CCACCGGATGTCGTTGGCAGCATGTTTGAG CCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCCA AAAAAAAAA ] [+] EMBL AU165483 [ CCCTCTGGAANGAGTGTTTAC AACCGATGCCCGTCGTCTTCTNCAAGGGACGAAAGGGTCCTTCGTTCGTGCCTCCTGGAGAGGATGCACCTCAACAGCCCA CCACCGGATGTCGTTGGCAGCATGTTTGAG CCGCC TCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCCA AAAAAAAAcac ] [+] EMBL AU181268 [ TTAC AA CGA G CCGTCGTC TCT C AGGGA G AAGGGT CTT GTT GTGCTTCCTGGAGAGGATGCACCTCAACAG CCA CCACCGGATGTCGTTGGCAGCATGTTTGAN CCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAANAAGATTCAGAGTNTGAGAGCGCCAAGAAGGATCCNCCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCNA AAAAAAAAAAAAAA ] [+] EMBL AU031654 [ GAGNGGATGCACCTCAACAN CCACCCACCGGATGTCGTTGGCANCATGTTTGAGCCCGNCCCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATNCAGAGTCTGNGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCCACGAAAAAA ] consensusID : consensus_14987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1305 fasta sequence [CTCCTCCGCCGCCGCGTCCCCCGTCTCTCTCGACGACGCCTCGACTGACGAGAGGAGGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGGGGGCGAGGAAGAGGAGGAGGCTTGTGCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCATGTTGAATCCATTGACATGGCAAATGCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAGTACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTCTTCCAAAGCTGATGATGCACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTGTTACAACGAGCCGTCGTCTCTCAGGGAGAAGGGTCTTGTTGTGCTTCCTGGAGAGGATGCACCTCAACAGCCACCACCGGATGTCGTTGGCAGCATGTTTGAGCCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATAC] [+] EMBL AK061682 [CTCCTCCGCCGCCGCGTCCCCCGTCTCTCTCGACGACGCCTCGACTGACGAGAGGAGGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGGGGGCGAGGAAGAGGAGGAGGCTTGTGCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAACCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAACGGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGTGAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAGAGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGTGTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCATGTTGAATCCATTGACATGGCAAATGCTCTAATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTGAGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAGTACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTCTTCCAAAGCTGATGATGCACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTGTTACAACGAGCCGTCGTCTCTCAGGGAGAAGGGTCTTGTTGTGCTTCCTGGAGAGGATGCACCTCAACAGCCACCACCGGATGTCGTTGGCAGCATGTTTGAGCCGCCGCTTCGCGCTTGGGCAGCATCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTGCTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGCAATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTGCATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGTGATGCTATTAAAATACGAAGATGAAAGATAC] [+] EMBL OSR02731A [ AGACTTCAGAGGAAAGCTCTCCATCTCCTACAGTACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTCTTCCAAAGCTGATGATGCACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGTCTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGACAAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGATCTCTCCGCACATCGTGAGGAGCGACANTTTGTGGACTCCCTCTGGAAGGAGTGTTACAACGAGCCGTCGTCTCTCAGGGAGAAGGGTCTTGTTGTGCTTCCTGGAGAGGTTGCACTTCAACAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14987#0 CGGACTCCTCCGCCGCCGCGTCCCCCGTCTCTCTCGACGACGCCTCGACTGACGAGAGGA 60 consensus_14987#1 ----CTCCTCCGCCGCCGCGTCCCCCGTCTCTCTCGACGACGCCTCGACTGACGAGAGGA 56 ******************************************************** consensus_14987#0 GGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGAGGGCGAGGAAGAGGAGGAGGCTTGT 120 consensus_14987#1 GGAGACCTCTCCCTCCCATAAAAGGGGGAGGACGGGGGCGAGGAAGAGGAGGAGGCTTGT 116 ********************************** ************************* consensus_14987#0 GCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAA 180 consensus_14987#1 GCTGCTTCGTCTTTTCCCGCCGCCGCGCACCGACGCCTGAACCAACTGTCTCGCCGTGAA 176 ************************************************************ consensus_14987#0 CCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAAC 240 consensus_14987#1 CCCTCGCCGGAGTTGGTAGAGGAGGAGATGGCCAAGGACGGAGGAGGGCCCGACTGGAAC 236 ************************************************************ consensus_14987#0 GGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGT 300 consensus_14987#1 GGCCTGCTCAAGTGGAGCCTCGCCCATGGCGACGGCACCGCCAAGCCGCGCTCGCTCAGT 296 ************************************************************ consensus_14987#0 GAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAG 360 consensus_14987#1 GAGGAGGACAAGAAATGGTTTATGGAGGCAATGCAAGCTAATACAATGGATGTTGTTAAG 356 ************************************************************ consensus_14987#0 AGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGT 420 consensus_14987#1 AGGATGAAGGAGATCACCCAAGTGATGAAAACTCCAGATGATGTACTACAGTCTCAAGGT 416 ************************************************************ consensus_14987#0 GTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCATGTTGAATCCATT 480 consensus_14987#1 GTGACTCCAGAGAACATCGAAGATATGTTGGATGAGTTACAGGAGCATGTTGAATCCATT 476 ************************************************************ consensus_14987#0 GACATGGCAAATGATCTGCACTCTATTGGTGGATTAGATCCCCTACTTGGTTACTTGAAA 540 consensus_14987#1 GACATGGCAAATG----------------------------------------------- 489 ************* consensus_14987#0 AATTCACATGCTGGCATCAGAGCAAAGGCTGCAGAGGTTGTGAGCACGATTGTGCAAAAT 600 consensus_14987#1 ------------------------------------------------------------ consensus_14987#0 AACCCCAAGAGCCAGCAACTTGTCATGGAATCTAATGGCCTGGAGCCACTGTTGACAAAC 660 consensus_14987#1 ------------------------------------------------------------ consensus_14987#0 TTCAGTTCCGATGCAAGCACGAATTCACGCACAAAAGCTCTTGGAGCAATATCATCTCTA 720 consensus_14987#1 -------------------------------------------------------CTCTA 494 ***** consensus_14987#0 ATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTG 780 consensus_14987#1 ATTCGTCATAACCAGCCAGGAGTTGCTGCATTCCGCCTGGGAAATGGCTACTCTGCACTG 554 ************************************************************ consensus_14987#0 AGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAG 840 consensus_14987#1 AGAGACGCTCTTGGTTCTGATGATGCTAGACTTCAGAGGAAAGCTCTCCATCTCCTACAG 614 ************************************************************ consensus_14987#0 TACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTCTTCCAAAG 900 consensus_14987#1 TACCTACTGCACGACAACAAGGCTGATAGGAGTGTTGCTACAGAGCTTGGTCTTCCAAAG 674 ************************************************************ consensus_14987#0 CTGATGATGCACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGT 960 consensus_14987#1 CTGATGATGCACCTGGCATCGAGTGATGATTCTGGAGTCCGGGAGGCTGCCTTAGGTGGT 734 ************************************************************ consensus_14987#0 CTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGAC 1020 consensus_14987#1 CTTCTCGAGCTGGCGCGGGACAATACATCCGGTGCTGGAAACGTGCTACCTGACCAAGAC 794 ************************************************************ consensus_14987#0 AAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGAT 1080 consensus_14987#1 AAGCTGAAAGATGTCCTTAAGAGCCGAATCGAAGGCATCAGCACAATGGATGCCGACGAT 854 ************************************************************ consensus_14987#0 CTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTGTTACAAC 1140 consensus_14987#1 CTCTCCGCACATCGTGAGGAGCGACAGCTTGTGGACTCCCTCTGGAAGGAGTGTTACAAC 914 ************************************************************ consensus_14987#0 GAGCCGTCGTCTCTCAGGGAGAAGGGTCTTGTTGTGCTTCCTGGAGAGGATGCACCTCAA 1200 consensus_14987#1 GAGCCGTCGTCTCTCAGGGAGAAGGGTCTTGTTGTGCTTCCTGGAGAGGATGCACCTCAA 974 ************************************************************ consensus_14987#0 CAGCCACCACCGGATGTCGTTGGCAGCATGTTTGAGCCGCCGCTTCGCGCTTGGGCAGCA 1260 consensus_14987#1 CAGCCACCACCGGATGTCGTTGGCAGCATGTTTGAGCCGCCGCTTCGCGCTTGGGCAGCA 1034 ************************************************************ consensus_14987#0 TCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTG 1320 consensus_14987#1 TCAAGGCCACCTCCCAAAGAAGATTCAGAGTCTGAGAGCGCCAAGAAGGATCCACCATTG 1094 ************************************************************ consensus_14987#0 CTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGC 1380 consensus_14987#1 CTGCTAGGCCCTGGACCGTCTTCCTAGACTTGTTGGGATTGCTTAGTTTTTCGCTTATGC 1154 ************************************************************ consensus_14987#0 AATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTG 1440 consensus_14987#1 AATTCTCTAGACTTAACCTTAAAAAGATCCTACATATTTGCAATCTGCTGAAATTCTCTG 1214 ************************************************************ consensus_14987#0 CATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGT 1500 consensus_14987#1 CATTTTAATCCTGTCCTGAGCTCTTGGATGTATTGAGGTTTTTGGATATCTGTAATCTGT 1274 ************************************************************ consensus_14987#0 GATGCTATTAAAATACGAAGATGAAAGATACTTATCTCTTCCACGAAAAAAAAAAAAAAA 1560 consensus_14987#1 GATGCTATTAAAATACGAAGATGAAAGATAC----------------------------- 1305 ******************************* consensus_14987#0 AAAAAA 1566 consensus_14987#1 ------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||