These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1428 fasta sequence [ATCATCCTTACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG-TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC-TGCAGAAGACGGTGCAGTCGCCGCCG-GCGCGGGGGGCGGCGCA-GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGTCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCGGCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAGAGGGCGGGGAGGAGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCGATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCC-TCCT-GCTCGA-CCACGGCGCCGCC-GTGACGGTGCAGAACCTGGACGGGAAGACGG-CCATCG-ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA-AACAATCGAGGCCAGGCCAGGCCAGGCC-AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAG-TGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTT] [+] EMBL CB620046 [ATCATCCTTACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCCCGAAAAGAAGACGAGCGTCTTGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC TGCATAAGACGGTGCAGTCGCCGCCG GCGCGGGGGGCGGCGCA GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGTCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCGGCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAG ] [+] EMBL CB620004 [ATCATCATCACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC TGCAGAAGACGGTGCAGTCGCCGCCG GCGCGGGGGGCGGCGCA GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAAGACCCGGTCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCC ] [+] EMBL OSS11583A [ ccgAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTNGGNGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGNCGCGCAGGGG TGTGCCGNCGG CAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAG AGATCGNCAAGGACCCGGCGTTCACGGAGATGGCGGAG AGCTTTCAGAAGACGGTTCAGTCGCC ] [+] EMBL OSS11544A [ ccgAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTNGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTNCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGANAAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGANAAGC TNCAGAAGACGGTNCAGTCGCCGCCGNGCG GGNGGGCGNCGCANGAAGGNTTCGGCGGCGGCGGCG ] [+] EMBL OSS15262A [ GCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCG AAAGGGGTTGTGCCGCC GNCAACNCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAAGA ATCGCCAAGGACCCGGCGTTCACGGAGATNGCGGA AGC TGCAGAAGACGGTGCAGTNGCC ] [+] EMBL AK068082 [ AACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC TGCAGAAGACGGTGCAGTCGCCGCCG GCGCGGGGGGCGGCGCA GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGCCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCGGCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAGAGGGCGGGGAGGAGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCGATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCC TCCT GCTCGA CCACGGCGCCGCC GTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGAGGCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCAT ] [+] EMBL OSS2738A [ AAGGAGATGGCGGAG AGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGA NAGC TGCAGAAGACGGTGCAGTCGCCGCCG G GCGGGGGGCGGCGCA GGAGGCTGNNGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTTTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGA CGGCTGGGCAGCGCGCTGATGCAGGACCCGGCCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGA ] [+] EMBL BP184586 [ AGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCGATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCC TCCT GCTCGA CCACGGCGCCGCC GTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG A ] [-] EMBL BE229269 [ gtTCCCCCTTCCTGGTTGGACCCACGGCCCCCCC GTGACGGTGCAGAACTTGGACGGGAAGACGGCCCATTGAACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGAGGCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGG ] [-] EMBL BI306269 [ CGCCGCC GTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGAGGCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAG TGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTT] [+] EMBL AU097176 [ cnGCCTGTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGA GCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAa a ] [+] EMBL OS39597 [ GGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGADGCCAGGSCAGGSCAGGCC AGCCATACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAG ] [+] EMBL BM037933 [ AGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGATAACAATCGAGGCCAGGCCAGGCCAGGCCTAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTT TGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAGCTGTTTAAaaaaaa ] consensusID : consensus_14992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 852 fasta sequence [CTTGATTATTTATAGAGTAATATTT-AAATACAAAATCAATAATTGAATATATTCGCATAATAAATTTGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTTTCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACAGAGGGAGTACTAATTATGCGCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACACGCATTGGCATCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT-CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAAAAAAAAAA] [-] EMBL CB620047 [CTTGATTATTTATAGAGTAATATTT AAATACAAAATCAATAATTGAATATATTCGCATAATAAATTTGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTTTCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACAGAGGGAGTACTAATTATGCGCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACACGCATTGGCATCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTT ] [-] EMBL CB620005 [ GAGTAATATTTNCAATACAAAATCAATAATTGAATATATTCGCATAATAAATTTGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTTTCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACAGAGGGAGTACTAATTATGCGCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACACGCATTGGCATCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAA ] [+] EMBL BE229918 [ GAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGCTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAA ] [+] EMBL BE229912 [ GAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACACGGTGGACAAGAACAAGAACACTGCGCTGCACTACACCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGAGCCG CGTGACGGCGCAAAACCTGTACTGGAAGACGGCCATCCGACGTGGCTAAACTCAACAACCAGTAGGAAGTCt ] [+] EMBL BI809584 [ CTGCATTTCGCTT CGGCTAT GCGAGCTGAAATGCGCGCAGGTTCTCCT GAGGCCGGCGCAGCCGT GACCCGGTGGACAAGAACAAG AC CGGC CTGCACTACGCCGCCGGTTACGGCCGCAAGGACTGGCTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTC ACCACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACCATCGAGG CAGGCCAGG CAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAAAAAAAAAA] consensusID : consensus_14992#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [GGNGAAAAAGGGNCNATTTTTTTGGGGNCCNCGCCNCCCCNNGAAANNGNNAAAAAAAAAAAAAAAAAAAGGGNGNAAAAAACCCCCCGGGNACCNCCNAAAANGNTTTNTTTNCCCTCCCTTTTTAANNNNGGGCCCCCGGGNNAGGNGNNAAAACTGGGNAGGGGANNAACNCCTTTTNAAAGGGGGAAATTNAAAAAACNGGGGGGNGTTCTTCAAGGTGGNTTNGGGGANANAACCCTTTTGGATAGGAAGGAAACATTGGGGCCAGGCCAAGGGCCAGGCCNAGCCAAAAATTCTTTTTTTTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTTGGATCCGTCAAAATGTTGGACTTTTAG] [-] EMBL BE229151 [GGNGAAAAAGGGNCNATTTTTTTGGGGNCCNCGCCNCCCCNNGAAANNGNNAAAAAAAAAAAAAAAAAAAGGGNGNAAAAAACCCCCCGGGNACCNCCNAAAANGNTTTNTTTNCCCTCCCTTTTTAANNNNGGGCCCCCGGGNNAGGNGNNAAAACTGGGNAGGGGANNAACNCCTTTTNAAAGGGGGAAATTNAAAAAACNGGGGGGNGTTCTTCAAGGTGGNTTNGGGGANANAACCCTTTTGGATAGGAAGGAAACATTGGGGCCAGGCCAAGGGCCAGGCCNAGCCAAAAATTCTTTTTTTTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTTGGATCCGTCAAAATGTTGGACTTTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14992#0 ATCATCCTTACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTC 60 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 CACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGG 120 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 CGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGGTGTGCCGCCGG 180 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 CCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGA 240 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 TGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGCTGCAGAAGA 300 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 CGGTGCAGTCGCCGCCGGCGCGGGGGGCGGCGCAGGAGGCTGCGGCGGCGGCGGCGCCGG 360 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 CGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCG 420 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 TGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGTCATGTCGTCCATGC 480 consensus_14992#1 ------------------------------------------------------------ consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 TTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGA 540 consensus_14992#1 -----------------------------------------------CTTGATTATTTAT 13 consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 AGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCA 600 consensus_14992#1 AGAGTAATATTT-----AAATACAAAATCAATAA--TTGAATATATTCGCATAATAAATT 66 consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 TGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCG 660 consensus_14992#1 TGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTT 126 consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 GCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAGAGG 720 consensus_14992#1 TCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACA-GAGGGAGTACTAATTATGC 185 consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 GCGGGGAGGAGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCG 780 consensus_14992#1 GCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACAC-----GCATTGGCA 240 consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 ATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGG 840 consensus_14992#1 TCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGG 300 consensus_14992#2 ------------------------------------------------------------ consensus_14992#0 AAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTC 900 consensus_14992#1 AAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTC 360 consensus_14992#2 ----------------------------------------GGNGAAAAAGGGNCNATTTT 20 * **** * * ** consensus_14992#0 TCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACT 960 consensus_14992#1 TCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACT 420 consensus_14992#2 TTTGGGGNCCNCGCCNCCCCNNGAAANNGNNAAAAAAAAAAAAAAAAAAAGGGNGNAAAA 80 * ** * ** ** * * * * ** ** ** ** * * * * consensus_14992#0 ACGCCGCCGGCTACGGCCGCAAGGACTGCGTC-GCCCTCCTGCTCGACCACGGCGCCGCC 1019 consensus_14992#1 ACGCCGCCGGCTACGGCCGCAAGGACTGCGTC-GCCCTCCTGCTCGACCACGGCGCCGCC 479 consensus_14992#2 AACCCCCCGGGNACCNCCNAAAANGNTTTNTTTNCCCTCCCTTTTTAANNNNGGGCCCCC 140 * ** **** ** ** ** * * ****** * * * *** ** consensus_14992#0 GTGAC-GGTGCAGAACCTGGACGGG---AAGACGGCCATCGACGTGGCGAAACTCAACAA 1075 consensus_14992#1 GTGAC-GGTGCAGAACCTGGACGGG---AAGACGGCCATCGACGTGGCGAAACTCAACAA 535 consensus_14992#2 GGGNNAGGNGNNAAAACTGGGNAGGGGANNAACNCCTTTTNAAAGGGGGAAATTNAAAAA 200 * * ** * ** **** ** ** * * * ** **** * ** ** consensus_14992#0 CCAGGAGGAAGTCCT-CAAGCTGCTCGAG----AAGCACGCCTTCGTATAGAATGAAACA 1130 consensus_14992#1 CCAGGAGGAAGTCCT-CAAGCTGCTCGAG----AAGCACGCCTTCGTATAGAATGAAACA 590 consensus_14992#2 ACNGGGGGGNGTTCTTCAAGGTGGNTTNGGGGANANAACCCTTTTGGATAGGAAGGAAAC 260 * ** ** ** ** **** ** * * ** * ** * **** * * ** consensus_14992#0 ATCGAGGCCAGGCCA--GGCCAGGCCAGCC---ACACTCCTCTCTCTCAATTCAGAGACA 1185 consensus_14992#1 ATCGAGGCCAGGCCA--GGCCAGGCCAGCC---ACACTCCTCTCTCTCAATCCAGAGACA 645 consensus_14992#2 ATTGGGGCCAGGCCAAGGGCCAGGCCNAGCCAAAAATTCTTTTTTTTCAATTCAGAGACA 320 ** * ********** ********* * * * ** * * * ***** ******** consensus_14992#0 AATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCT 1245 consensus_14992#1 AATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTT 705 consensus_14992#2 AATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCT 380 ********************************************************** * consensus_14992#0 TCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAG 1305 consensus_14992#1 TCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAG 765 consensus_14992#2 TCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAG 440 ************************************************************ consensus_14992#0 GTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGA 1365 consensus_14992#1 GTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGA 825 consensus_14992#2 GTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGA 500 ************************************************************ consensus_14992#0 AAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGA 1425 consensus_14992#1 AAAGTAAATTTCATTTCAAAAAAAAAA--------------------------------- 852 consensus_14992#2 AAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGA 560 ****************** ** consensus_14992#0 TTT--------------------------- 1428 consensus_14992#1 ------------------------------ consensus_14992#2 TTTGGATCCGTCAAAATGTTGGACTTTTAG 590 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||