|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1428 fasta sequence
[ATCATCCTTACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG-TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC-TGCAGAAGACGGTGCAGTCGCCGCCG-GCGCGGGGGGCGGCGCA-GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGTCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCGGCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAGAGGGCGGGGAGGAGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCGATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCC-TCCT-GCTCGA-CCACGGCGCCGCC-GTGACGGTGCAGAACCTGGACGGGAAGACGG-CCATCG-ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA-AACAATCGAGGCCAGGCCAGGCCAGGCC-AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAG-TGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTT]
[+] EMBL CB620046 [ATCATCCTTACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCCCGAAAAGAAGACGAGCGTCTTGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC TGCATAAGACGGTGCAGTCGCCGCCG GCGCGGGGGGCGGCGCA GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGTCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCGGCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAG ]
[+] EMBL CB620004 [ATCATCATCACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC TGCAGAAGACGGTGCAGTCGCCGCCG GCGCGGGGGGCGGCGCA GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAAGACCCGGTCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCC ]
[+] EMBL OSS11583A [ ccgAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTNGGNGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGNCGCGCAGGGG TGTGCCGNCGG CAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAG AGATCGNCAAGGACCCGGCGTTCACGGAGATGGCGGAG AGCTTTCAGAAGACGGTTCAGTCGCC ]
[+] EMBL OSS11544A [ ccgAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTNGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTNCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGANAAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGANAAGC TNCAGAAGACGGTNCAGTCGCCGCCGNGCG GGNGGGCGNCGCANGAAGGNTTCGGCGGCGGCGGCG ]
[+] EMBL OSS15262A [ GCCTGAACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCG AAAGGGGTTGTGCCGCC GNCAACNCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAAGA ATCGCCAAGGACCCGGCGTTCACGGAGATNGCGGA AGC TGCAGAAGACGGTGCAGTNGCC ]
[+] EMBL AK068082 [ AACCAAGAACACTGCCCTCCTCCACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGGCGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGG TGTGCCGCCGGCCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGATGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGC TGCAGAAGACGGTGCAGTCGCCGCCG GCGCGGGGGGCGGCGCA GGAGGCTGCGGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGCCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCATGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCGGCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAGAGGGCGGGGAGGAGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCGATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCC TCCT GCTCGA CCACGGCGCCGCC GTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGAGGCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCAT ]
[+] EMBL OSS2738A [ AAGGAGATGGCGGAG AGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGA NAGC TGCAGAAGACGGTGCAGTCGCCGCCG G GCGGGGGGCGGCGCA GGAGGCTGNNGCGGCGGCGGCGCCGGCGCTGGACCCGAGCAAGTACGTTTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCGTGGCGATGGCGGA CGGCTGGGCAGCGCGCTGATGCAGGACCCGGCCATGTCGTCCATGCTTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGAAGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGA ]
[+] EMBL BP184586 [ AGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCGATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCC TCCT GCTCGA CCACGGCGCCGCC GTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG A ]
[-] EMBL BE229269 [ gtTCCCCCTTCCTGGTTGGACCCACGGCCCCCCC GTGACGGTGCAGAACTTGGACGGGAAGACGGCCCATTGAACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGAGGCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGG ]
[-] EMBL BI306269 [ CGCCGCC GTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGAGGCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAG TGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTT]
[+] EMBL AU097176 [ cnGCCTGTGACGGTGCAGAACCTGGACGGGAAGACGG CCATCG ACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGA GCCAGGCCAGGCCAGGCC AGCCACACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAa a ]
[+] EMBL OS39597 [ GGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGA AACAATCGADGCCAGGSCAGGSCAGGCC AGCCATACTCCTCTCTCTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAG ]
[+] EMBL BM037933 [ AGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGATAACAATCGAGGCCAGGCCAGGCCAGGCCTAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTT TGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAGCTGTTTAAaaaaaa ]
consensusID : consensus_14992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 852 fasta sequence
[CTTGATTATTTATAGAGTAATATTT-AAATACAAAATCAATAATTGAATATATTCGCATAATAAATTTGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTTTCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACAGAGGGAGTACTAATTATGCGCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACACGCATTGGCATCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT-CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAAAAAAAAAA]
[-] EMBL CB620047 [CTTGATTATTTATAGAGTAATATTT AAATACAAAATCAATAATTGAATATATTCGCATAATAAATTTGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTTTCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACAGAGGGAGTACTAATTATGCGCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACACGCATTGGCATCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTT ]
[-] EMBL CB620005 [ GAGTAATATTTNCAATACAAAATCAATAATTGAATATATTCGCATAATAAATTTGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTTTCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACAGAGGGAGTACTAATTATGCGCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACACGCATTGGCATCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGGAAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAA ]
[+] EMBL BE229918 [ GAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGCTCTCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACTACGCCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTCAACAACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACAATCGAGGCCAGGCCAGGCCAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAA ]
[+] EMBL BE229912 [ GAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTCTCCTGGAGGCCGGCGCGGCCGTGGACACGGTGGACAAGAACAAGAACACTGCGCTGCACTACACCGCCGGCTACGGCCGCAAGGACTGCGTCGCCCTCCTGCTCGACCACGGAGCCG CGTGACGGCGCAAAACCTGTACTGGAAGACGGCCATCCGACGTGGCTAAACTCAACAACCAGTAGGAAGTCt ]
[+] EMBL BI809584 [ CTGCATTTCGCTT CGGCTAT GCGAGCTGAAATGCGCGCAGGTTCTCCT GAGGCCGGCGCAGCCGT GACCCGGTGGACAAGAACAAG AC CGGC CTGCACTACGCCGCCGGTTACGGCCGCAAGGACTGGCTCGCCCTCCTGCTCGACCACGGCGCCGCCGTGACGGTGCAGAACCTGGACGGGAAGACGGCCAT CGACGTGGCGAAACTC ACCACCAGGAGGAAGTCCTCAAGCTGCTCGAGAAGCACGCCTTCGTATAGAATGAAACCATCGAGG CAGGCCAGG CAGGCCAGCCACACTCCTCTCTCTCAATCCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAAAAAAAAAA]
consensusID : consensus_14992#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[GGNGAAAAAGGGNCNATTTTTTTGGGGNCCNCGCCNCCCCNNGAAANNGNNAAAAAAAAAAAAAAAAAAAGGGNGNAAAAAACCCCCCGGGNACCNCCNAAAANGNTTTNTTTNCCCTCCCTTTTTAANNNNGGGCCCCCGGGNNAGGNGNNAAAACTGGGNAGGGGANNAACNCCTTTTNAAAGGGGGAAATTNAAAAAACNGGGGGGNGTTCTTCAAGGTGGNTTNGGGGANANAACCCTTTTGGATAGGAAGGAAACATTGGGGCCAGGCCAAGGGCCAGGCCNAGCCAAAAATTCTTTTTTTTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTTGGATCCGTCAAAATGTTGGACTTTTAG]
[-] EMBL BE229151 [GGNGAAAAAGGGNCNATTTTTTTGGGGNCCNCGCCNCCCCNNGAAANNGNNAAAAAAAAAAAAAAAAAAAGGGNGNAAAAAACCCCCCGGGNACCNCCNAAAANGNTTTNTTTNCCCTCCCTTTTTAANNNNGGGCCCCCGGGNNAGGNGNNAAAACTGGGNAGGGGANNAACNCCTTTTNAAAGGGGGAAATTNAAAAAACNGGGGGGNGTTCTTCAAGGTGGNTTNGGGGANANAACCCTTTTGGATAGGAAGGAAACATTGGGGCCAGGCCAAGGGCCAGGCCNAGCCAAAAATTCTTTTTTTTCAATTCAGAGACAAATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCTTCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAGGTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGAAAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGATTTGGATCCGTCAAAATGTTGGACTTTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14992#0 ATCATCCTTACCACCACTAACAACAACGCCACTGCCTGAACCAAGAACACTGCCCTCCTC 60
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 CACACGACATGGCTTCTCAAGAAGAGAAGACGAGCGTCAAGTCGGAGGAGGCCTCGTCGG 120
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 CGGCGGAGGAGCAGCCACCTCAAGCTGCAGCTCCGCCGCCGCGCAGGGGTGTGCCGCCGG 180
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 CCAACCCCTTCGACTTCTCAACCATGATGAACTTGCTCAATGATCCGAGCATAAAGGAGA 240
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 TGGCGGAGCAGATCGCCAAGGACCCGGCGTTCACGGAGATGGCGGAGCAGCTGCAGAAGA 300
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 CGGTGCAGTCGCCGCCGGCGCGGGGGGCGGCGCAGGAGGCTGCGGCGGCGGCGGCGCCGG 360
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 CGCTGGACCCGAGCAAGTACGTGTCGACGATGCAGCAGCTGATGCAGAACCCGCAGTTCG 420
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 TGGCGATGGCGGAGCGGCTGGGCAGCGCGCTGATGCAGGACCCGGTCATGTCGTCCATGC 480
consensus_14992#1 ------------------------------------------------------------
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 TTGGCGGCCTCACCAACCCCGCCCACAAGGAGCAGCTCGAGGCCCGCATCGCCCGCATGA 540
consensus_14992#1 -----------------------------------------------CTTGATTATTTAT 13
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 AGGACGACCCCTCCCTCAAGCCCATCCTCGACGAGATCGAGAACGGCGGCCCCGCCGCCA 600
consensus_14992#1 AGAGTAATATTT-----AAATACAAAATCAATAA--TTGAATATATTCGCATAATAAATT 66
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 TGATGAAGTATTGGAACGACCCTGAAGCGCTGCAGAAGTTCGGGAGGGCGATGGGCGTCG 660
consensus_14992#1 TGTTTAGAATTGAAAATGTTATTATTTTTTTCTATAAACTTGTTTAAATCTAAAGCTGTT 126
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 GCCCGTCGGGCGAGGGCGCGGCGGCGGCCGGCGGCGAGCACGAGGAGGCGGAGGAAGAGG 720
consensus_14992#1 TCACTTTGATTAAATTTAAAACGTTTTATAATCTAAAACA-GAGGGAGTACTAATTATGC 185
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 GCGGGGAGGAGGGCGAGTACGAGGACGAGTCCGTCATCCACCACACTGCCAGCGTCGGCG 780
consensus_14992#1 GCATTTGCTCAAGTAAAATCTGCATCTTTTCCTTCATCTTCAACAC-----GCATTGGCA 240
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 ATGTCGAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGG 840
consensus_14992#1 TCGTTCAGGGCCTGAAGAAAGCATTGGAGGAAGGCGTGGACAAGGACGAGGAGGATTCGG 300
consensus_14992#2 ------------------------------------------------------------
consensus_14992#0 AAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTC 900
consensus_14992#1 AAGGGAGGAGAGGCCTGCATTTCGCTTGCGGCTATGGCGAGCTGAAATGCGCGCAGGTTC 360
consensus_14992#2 ----------------------------------------GGNGAAAAAGGGNCNATTTT 20
* **** * * **
consensus_14992#0 TCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACT 960
consensus_14992#1 TCCTGGAGGCCGGCGCGGCCGTGGACGCGGTGGACAAGAACAAGAACACGGCGCTGCACT 420
consensus_14992#2 TTTGGGGNCCNCGCCNCCCCNNGAAANNGNNAAAAAAAAAAAAAAAAAAAGGGNGNAAAA 80
* ** * ** ** * * * * ** ** ** ** * * * *
consensus_14992#0 ACGCCGCCGGCTACGGCCGCAAGGACTGCGTC-GCCCTCCTGCTCGACCACGGCGCCGCC 1019
consensus_14992#1 ACGCCGCCGGCTACGGCCGCAAGGACTGCGTC-GCCCTCCTGCTCGACCACGGCGCCGCC 479
consensus_14992#2 AACCCCCCGGGNACCNCCNAAAANGNTTTNTTTNCCCTCCCTTTTTAANNNNGGGCCCCC 140
* ** **** ** ** ** * * ****** * * * *** **
consensus_14992#0 GTGAC-GGTGCAGAACCTGGACGGG---AAGACGGCCATCGACGTGGCGAAACTCAACAA 1075
consensus_14992#1 GTGAC-GGTGCAGAACCTGGACGGG---AAGACGGCCATCGACGTGGCGAAACTCAACAA 535
consensus_14992#2 GGGNNAGGNGNNAAAACTGGGNAGGGGANNAACNCCTTTTNAAAGGGGGAAATTNAAAAA 200
* * ** * ** **** ** ** * * * ** **** * ** **
consensus_14992#0 CCAGGAGGAAGTCCT-CAAGCTGCTCGAG----AAGCACGCCTTCGTATAGAATGAAACA 1130
consensus_14992#1 CCAGGAGGAAGTCCT-CAAGCTGCTCGAG----AAGCACGCCTTCGTATAGAATGAAACA 590
consensus_14992#2 ACNGGGGGGNGTTCTTCAAGGTGGNTTNGGGGANANAACCCTTTTGGATAGGAAGGAAAC 260
* ** ** ** ** **** ** * * ** * ** * **** * * **
consensus_14992#0 ATCGAGGCCAGGCCA--GGCCAGGCCAGCC---ACACTCCTCTCTCTCAATTCAGAGACA 1185
consensus_14992#1 ATCGAGGCCAGGCCA--GGCCAGGCCAGCC---ACACTCCTCTCTCTCAATCCAGAGACA 645
consensus_14992#2 ATTGGGGCCAGGCCAAGGGCCAGGCCNAGCCAAAAATTCTTTTTTTTCAATTCAGAGACA 320
** * ********** ********* * * * ** * * * ***** ********
consensus_14992#0 AATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCT 1245
consensus_14992#1 AATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGTT 705
consensus_14992#2 AATGCTGCATTTCTGCTCTGCATATGCTCCTGTTCATCCGCAAATGAGTACCTGTATGCT 380
********************************************************** *
consensus_14992#0 TCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAG 1305
consensus_14992#1 TCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAG 765
consensus_14992#2 TCTGTATGTATCGAAGAGTGCACTAGATTATTTTTTATTTCACTTGGGAGCAAGGTTAAG 440
************************************************************
consensus_14992#0 GTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGA 1365
consensus_14992#1 GTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGA 825
consensus_14992#2 GTGAGATTGGATTGCTATTCTATTCATCCTTCCAGAGTTTTGTTTAATGAATAAGGAAGA 500
************************************************************
consensus_14992#0 AAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGA 1425
consensus_14992#1 AAAGTAAATTTCATTTCAAAAAAAAAA--------------------------------- 852
consensus_14992#2 AAAGTAAATTTCATTTCAGTGTTTAACTGTTTATGTCTGAATTTGACATCTCTCATTGGA 560
****************** **
consensus_14992#0 TTT--------------------------- 1428
consensus_14992#1 ------------------------------
consensus_14992#2 TTTGGATCCGTCAAAATGTTGGACTTTTAG 590
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||