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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14993#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1309 fasta sequence
[GAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGAGAGCGAGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT-GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG-TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCCGCGGCTC-GCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTG-CAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA-CTA-GCGTCGCGA-TGTCGCGA-GGCGA-GTACTA-GTA-GCCTTTTA-GCTCTAGCTGA-TGCTGCTGCGA-GCCATGGGGA-TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG-CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGCGCTTGTGAACCCATTTGTGTTTAAAAAAAAA]
[-] EMBL CF326136 [GAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGAGAGCGAGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCG ]
[+] EMBL AK107853 [ aGCGAGAGCGAGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCCGCGGCTC GCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTG CAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA CTA GCGTCGCGA TGTCGCGA GGCGA GTACTA GTA GCCTTTTA GCTCTAGCTGA TGCTGCTGCGA GCCATGGGGA TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAG ]
[+] EMBL BI795014 [ AGAGAGAGATGAGCCC GCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGAC ]
[+] EMBL BI798118 [ AGAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGA GCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCCCGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGA ]
[+] EMBL BI799455 [ AGAGAGAGATGAGCCC GCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGGCGGGGAGGCGG TCTACTGC CCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGA ]
[-] EMBL CB966686 [ CGGCGGCGGAGATGGGAGCACCTTGGCCGGT GGAGTTCATGGGCGCGGCGGAGGGCGGGTTCGCCGGGGAGNCGG TCTACTGCGCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCCGCGGCTCGGCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCCACGGCACCGGCCCCGGGTG CAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA CTA GCGTCGCGA TGTCGCGA GGCGA GTACTA GTA GCCTTTTA GCTCTAGCTGA TGCTGCTGCGA GCCATGGGGA TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCCATAAGAGGGAGCTCGCGTCCCATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCCAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCT ]
[-] EMBL CB967466 [ CACC TGGCCGGTGGGAGTTCATGGGCGCGCCGGAGGCCGGTTTCGCCGGGG GGCGGTTCTACTGCCCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGNCCGCGGCTC GCGCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCCACGGCACCGGCCCCGGGTG CAACGGCGGGTTCGGCCCCTGCGGCACCTGCGTCGA CTA GCGTCGCGA TGTCGCGA GGCGA GTACTA GTA GCCTTTTA GCTCTAGCTGA TGCTGCTGCGA GCCATGGGGA TTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCCAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCT ]
[+] EMBL CB965347 [ GCCGCCGCCGCCGCCGCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCCCGCGGCGGGTTCGGCCCCTGCGGCCGCTGCGTCGACCTACGCGTCGCGACTGTCGCGACGGCGACGTACTACGTACGCCTTTTACGCTCTAGCTGACTGCTGCTGCGACGCCATGGGGACTTTTGCTTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGC TTAGACCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGCTCG ]
[+] EMBL BI802901 [ AGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAG CCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCC AATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGCGCTTGTGAACCCATTTGTGTTTAAAAAAAAA]
[+] EMBL BI803191 [ AGATCATCAGCTCCCCTTT TGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTA CCGCT CAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCC AATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAAGTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGAGCTTGTGAACCAATTTGTGTTTAAAAAAAAA]
consensusID : consensus_14993#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1078 fasta sequence
[ATGTATTAATCACCAGATAAGCACCTTTAATTCGCTGCGGCCTGAATTGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGCAGCCGACGGGCAGAGAGGAGGAGGGGAGGGGCGGC]
[-] EMBL AK101876 [ATGTATTAATCACCAGATAAGCACCTTTAATTCGCTGCGGCCTGAATTGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCTTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGACGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTGGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGCAGCCGACGGGCAGAGAGGAGGAGGGGAGGGGCGGC]
[+] EMBL CF309994 [ tttttTAAGCACCTTTAATTCGCTGCGGCCTGAATTGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACGCCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAG ]
[+] EMBL CB666221 [ TGGTTAGCTGATTACAACGCTCAAAATGTCATTTATAACCCTACAACCAACAGAGCTTACATGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCA ]
[-] EMBL CF309995 [ TGTAGTACTACAAAATTTCATTGGTCACACTGCATTGAGGATGATCAGAGGTACATTCTTCCAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGCCGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACTGATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAAGAGAACATGAGCCACAGCCAAGAACAACAGATGATGGAACAGAATCAGAAGTGTGCAATTCCATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTGATTGAGAAATAATCACCACGCCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTTTCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTGTGCTCTAGATTTGGGATAA ]
consensusID : consensus_14993#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 895 fasta sequence
[ATTTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTGGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGACTGGGCAAGGGAAAAAAAAAGTGGTTCAGCAAACATGGAACAAAAAAAAGTATGTAATTTATGTCTCATAACCTTCTGCGGCAGAAGTATTATGACTTAAGCAGAATCGTAATAACATAACATTTGTGCAAATCTGAAAGAAGGTGCATAGGAGCACCTCTCTGAAATATAACTTCTAAAAAACCAAGGCAGTTTAAAGAACTGGTATATTGCTTAAGATTTTGCAATGTCATGACACAATCTTTCCATTGAGGGGGACAGATTCAGATTGGGACTCTTGAGTTTATAGTCACAGATCTGTTACAATTTTACATTTGGCATTGCATATTGTTTTCACAGATTATCTAATTGATTATATGGATAAACTAAACATTTTAAGAAATAAACTTAAAAATAGCTTAGAAAATGTGGTTTAAACAATGCAGTAGAAGAAAGTTTTCGAGAAAACATATTTTTAGAGGCATGATCAAATAAAGTAGCCAAAAAGAACAGGGCCGCAGAGGGCACTTATTGCAAGATTATAGATTCATAGCATGACTTTAAATATGGTGATATAATGATCTACTCTTTCCAAAGGGGGGGC]
[-] EMBL CB666220 [ATTTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTGGGGATAACGTAGGATTTCCCATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGTTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGACTGGGCAAGGGAAAAAAAAAGTGGTTCAGCAAACATGGAACAAAAAAAAGTATGTAATTTATGTCTCATAACCTTCTGCGGCAGAAGTATTATGACTTAAGCAGAATCGTAATAACATAACATTTGTGCAAATCTGAAAGAAGGTGCATAGGAGCACCTCTCTGAAATATAACTTCTAAAAAACCAAGGCAGTTTAAAGAACTGGTATATTGCTTAAGATTTTGCAATGTCATGACACAATCTTTCCATTGAGGGGGACAGATTCAGATTGGGACTCTTGAGTTTATAGTCACAGATCTGTTACAATTTTACATTTGGCATTGCATATTGTTTTCACAGATTATCTAATTGATTATATGGATAAACTAAACATTTTAAGAAATAAACTTAAAAATAGCTTAGAAAATGTGGTTTAAACAATGCAGTAGAAGAAAGTTTTCGAGAAAACATATTTTTAGAGGCATGATCAAATAAAGTAGCCAAAAAGAACAGGGCCGCAGAGGGCACTTATTGCAAGATTATAGATTCATAGCATGACTTTAAATATGGTGATATAATGATCTACTCTTTCCAAAGGGGGGGC]
consensusID : consensus_14993#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 723 fasta sequence
[NAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGG--AGGGCGGGTTCGGCGGGGAGGCGGTCTA-TGCG-CCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTC-GCGACGCCGCC-NCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGG-CCCTGCGGCACCTGCGTNGACTAGCGTCGCGATGTCGCGAGGCGAGTACTAGTAGCCTTTTAGCTCTAGCTGATGCTGCTGCGAGCCATGGGGATTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTA-TTAGCAT-GGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTCCCG]
[+] EMBL OS0745A [NAGAGAGATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGG AGGGCGGGTTCGGCGGGGAGGCGGTCTACTGCG CCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGCCGCC NCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTNGACTAGCGTCGCGATGTCGCGAGGCGAGTACTAGTAGCCTTTTAGCTCTAGCTGATGC ]
[+] EMBL C98126 [ nGCCCGGCCGNAAGGGCGGGTTCGCCGGGGAGGCGGTCTA TGCGCCCGTCATCCTGTGGCTGTCCGTCGTGGCGTGGATCATCTTCACNTCCGTC GCGACGCCGCCGCCCGCAGCAGCCCGGTGTTCGTCGGCGCCGCCGGCATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGG CCCTGCGGCACCTGCGTCNACTAGCGTCGCGATGTCGCGAGGCGAGTACTAGTAGCCTTTTAGCTCTAGCTGATGCTGCTGCGAGCCATGGGGATTTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTA TTAGCAT GGAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTNTNCTTCAAANNAAA ]
[-] EMBL AU066200 [ CCTTTTAGCCCTANCTGATGCTGCTNCGAGCCATGGGGA TTTGATTAGGTGTGTGTGAGATCATCAGCTCCCCTTTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGTAATCAAGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATTTCTTGAAATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATNTAAATTGATCGATCAAGCTGATGTGCTCTTGGTGGTCTTGAGTATTTAGCATGGGAAGCTCATCAGTTCCTCTTCGANCAATCCTATGTAAANTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCA ]
[+] EMBL CF308508 [ GAAGCTCATCAGTTCCTCTTCGATCAATCCTATGTAAATTCCTTGAAACCTTAATCTTAATGTTCTCTTCCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCTTCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14993#0 GAAGATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCAT 60
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 ------------------------------------------------------------
consensus_14993#2 ------------------------------------------------------------
consensus_14993#0 GCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGAGCC 120
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 ------------------------------------------------------------
consensus_14993#2 ------------------------------------------------------------
consensus_14993#0 ATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCA 180
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 ------------------------------------------------------------
consensus_14993#2 ------------------------------------------------------------
consensus_14993#0 TCATATGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAG 240
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 ------------------------------------------------------------
consensus_14993#2 ------------------------------------------------------------
consensus_14993#0 TTGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTC 300
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 ------------------------------------------------------------
consensus_14993#2 ------------------------------------------------------------
consensus_14993#0 TTGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGA 360
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 ------------------------------------------------------------
consensus_14993#2 ------------------------------------------------------------
consensus_14993#0 CGCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCT 420
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 ------------ATGTATTAATCACCAGATA-AGCACCTTTAATTCGCTGCGGCCTGAAT 47
consensus_14993#2 --------------------ATTTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAAGAT 40
consensus_14993#0 GGGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGAGAGCGAGAGAGAG 480
consensus_14993#3 -----------------------------------------------------NAGAGAG 7
consensus_14993#1 TGACAAAAGGTGGTTAGCTGATTACAACGGTCAAAATGTCATTTATAACCCTACAACCAA 107
consensus_14993#2 TGC----AGTTGCTTATCATATTCT---GCTCTAGA--TTGGGGATAACGTAGGATTTCC 91
*
consensus_14993#0 ATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGGAG 540
consensus_14993#3 ATGAGCCCGGCGGCGGAGATGGGAGCACCTTGGCCGGTGGAGTTCATGGGCGCGGCGGAG 67
consensus_14993#1 CAGAGCTTACATGTAGTACTACAAA-ATTTCATTGGTCACACTGCATTGA-GGATGATCA 165
consensus_14993#2 CATGCCTTTTGCACACTGAGAAATTCATTTCGCTCACTGGAAGACACCAATGGATTGAGA 151
* * * * ** *
consensus_14993#0 GGCG-----GGTTCGGCGGGGAGGCGGTCTACTGCGCCG---------TCATCCTGTGGC 586
consensus_14993#3 GGCG-----GGTTCGGCGGGGAGGCGGTCTA-TGCGCCG---------TCATCCTGTGGC 112
consensus_14993#1 GAGGTACATTCTTC--CAGAATTTCATTTTTAAACAGCAATGTACGTTCCATGTGCACGC 223
consensus_14993#2 GCCATCTGTGCTTTGTCAGGATGTGTATTTAGTACAGCA------GACTTATATGCTGCA 205
* ** * * * * * * **
consensus_14993#0 TGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCGGCGACGGCGACGAGGGCGGCGGCC 646
consensus_14993#3 TGTCCGTCGTGGCGTGGATCATCTTCACCTCCGTCG------------------------ 148
consensus_14993#1 CGAATTCTTCGAAGAATAGGAGGTAGCATCTTTATATTGATCTTTGCTGGCAAGCATACT 283
consensus_14993#2 CGAATTTCATCATATGTAGCATCTTTCCTCAC-GGATAGAACTTCG-TACAAGGTCTCCT 263
* * * *
consensus_14993#0 GCGGCTCGCGCCGCCGCCGCCGCCGCCG-CAGCAGCCCGGTGTTCGTCGGCGCCGCCGGC 705
consensus_14993#3 --------------CGACGCCGCCNCCG-CAGCAGCCCGGTGTTCGTCGGCGCCGCCGGC 193
consensus_14993#1 GATAGATGCAAACAAAAAAAAATTACCATCAAGTTTTATTTGTAACCAATCGTGCCTTAA 343
consensus_14993#2 GGTTGG--------AAAAGTTGCCTCCTTCAAG---CATGTCTGAATAACTGTCTCTAGA 312
** ** * * * *
consensus_14993#0 ATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGGCCCCTGCGGCACCTGCGTC 765
consensus_14993#3 ATCTGCGACGGCACCGGCCCCGGGTGCAGCGGCGGGTTCGGCCC-TGCGGCACCTGCGTN 252
consensus_14993#1 GAGAACATGAGCCACAGCCAAGAA--CAACAGATGATGGAACAG-AATCAGAAGTGTGCA 400
consensus_14993#2 CTGGGCAAGGGAAAAAAAAAGTGGTTCAGCAAAC-ATGGAACAA-AA--AAAAGTATGTA 368
* * ** * * * * * *
consensus_14993#0 GACT-AGCGTCGCGATGTCGCGAGGC--GAGT---ACTAGTAGCCTTTTAGCTCTAGCTG 819
consensus_14993#3 GACT-AGCGTCGCGATGTCGCGAGGC--GAGT---ACTAGTAGCCTTTTAGCTCTAGCTG 306
consensus_14993#1 ATTC-CATCTCTCCGTCCTCCCTGACTGAAATTCCAATCTGACCAAGTTCACGTGAAGTG 459
consensus_14993#2 ATTTATGTCTCATAACCTTCTGCGGCAGAAGT---ATTATGAC-----TTAAGCAGAATC 420
** * * * * * * * * *
consensus_14993#0 ATGCTGCTGCGA--GCCATGGGGATTTTGAT--TAGGTGTGTGTGAGATCATCAGCTCCC 875
consensus_14993#3 ATGCTGCTGCGA--GCCATGGGGATTTTGAT--TAGGTGTGTGTGAGATCATCAGCTCCC 362
consensus_14993#1 ATTGAGAAATAATCACCACACCTACAAGGATACAAAAGCTCCACAGAATCAGCAGTACTT 519
consensus_14993#2 GTAATAACATAACATTTGTGCAAATCTGAA---AGAAGGTGCATAGG---AGCACCTCTC 474
* * * * * * ** *
consensus_14993#0 CT--TTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGT 933
consensus_14993#3 CT--TTGTGAAGGCAATAAGAGGGAGCTCGCGTCCAATCCTTTGCTTTAGCCGCTGCAGT 420
consensus_14993#1 TCAACGATCATGTCATCAATTTCAATTTCAGTTGCAACAATTTCAAGGTTCTGTCGGGAA 579
consensus_14993#2 TGAAATATAACTTCTAAAAAACCAAGG-CAGTTTAAAGAACT--GGTATATTGCTTAAGA 531
* * * ** * * * ** * *
consensus_14993#0 AATCA-AGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATT 992
consensus_14993#3 AATCA-AGCTCTAAGCTTTCTCCTTTTTTTTCTCCCAAATCGATCGATCCTATGTAAATT 479
consensus_14993#1 GATTGCAGTTGCTTATCATATTCTGCTCTAGATTTGGGATAACGTAGGATTTCCCATGCC 639
consensus_14993#2 TTTTGCAATGTCATGACACAATCTTTCCATTGAGGGGGACAGATTCAGATTGGGACTCTT 591
* * ** * *
consensus_14993#0 TCTTGAA-ATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAA----T 1047
consensus_14993#3 TCTTGAA-ATCTTGATCTTTGATGCTCTTGCTTTGAACTCGCGATCATATGTAAA----T 534
consensus_14993#1 TTTTGCACACTGAGAAATTCATTTCGCTCAC-TGGAAGACACCAATGGATTGAGAGCCAT 698
consensus_14993#2 GAGTTTATAGTCACAGATCTGTTACAATT---TTACATTTGGCATTGCATATTG---TTT 645
* * * * * * * * * * * ** *
consensus_14993#0 TGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGT 1107
consensus_14993#3 TGATCGATCAAGCTGATGTGCTCTTGGTGTTCTTGAGTATTAGCATGGAAGCTCATCAGT 594
consensus_14993#1 CTGTGCTTTGTCAGGATGTGTATTTAGTACAGCAGACTTATATGCTGCACGAATTTCATC 758
consensus_14993#2 TCACAGATTATCTAATTGATTATATGGATAAACTAAACATTTTAAGAAATAAACTTAAAA 705
* ** * * * * * * *
consensus_14993#0 TCCTCTTCG-ATCAATCCT-----ATGTAAATTCCTTGAAA---CCTTAATCTTAATGTT 1158
consensus_14993#3 TCCTCTTCG-ATCAATCCT-----ATGTAAATTCCTTGAAA---CCTTAATCTTAATGTT 645
consensus_14993#1 ATA-TGTAGCATCTTTCCTCACGGATAGAACTTCGTACAAGGTCTCCTGGTTGGAAAAGT 817
consensus_14993#2 ATAGCTTAGAAAATGTGGTTT---AAACAATGCAGTAGAAGAAAGTTT--TCGAGAAAAC 760
* * * * * * ** * ** * * *
consensus_14993#0 CTCTTCCTCACTTGATGCTCGTGCTTTCAACTTGCAATTCTATGTAAATTGATCGATCAA 1218
consensus_14993#3 CTCTTCCTCAAANNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 705
consensus_14993#1 TGCCTCCTTCAAGCATGTCTGAATAACTGTCTCTAGAAAGCAAAATAACGGCGAAGGTCT 877
consensus_14993#2 ATATTTTTAGAGGCATGATCAAATAAA-GTAGCCAAAAAGAACAGGGCCGCAGAGGGCAC 819
* * * * *
consensus_14993#0 GTAGATGTTCTTGGTGTTCTTGAGTATTATTATAGCATGAAAGTTCATCAGCTCTCCTGC 1278
consensus_14993#3 AAAAACACT----GTCTTCCCG-------------------------------------- 723
consensus_14993#1 TGACGGCCGATGCAGCCTTGTGGATCGCAGGGTCGACTGCTTGCGCGGCGAAGTTGCGAC 937
consensus_14993#2 TTAT------TGCAAGATTATAGATTCATAGCATGACTTTAAATATGGTGATATAATGAT 873
* *
consensus_14993#0 GCTTGTGAACCCATTTGTGTTTAAAAAAAAA----------------------------- 1309
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 GCGCGAGGCGGCGAGGGGAGGTGCGGCCGATGCGGGGTACGTGAATGGTTTCCGAACCTG 997
consensus_14993#2 CTACTCTTTCCAAAGGGGGGGC-------------------------------------- 895
consensus_14993#0 ------------------------------------------------------------
consensus_14993#3 ------------------------------------------------------------
consensus_14993#1 GGCCGCCGTCAACCGCTGGTCGAGGCGGCGGCCGGTGCGGCGGCGCAGCCGACGGGCAGA 1057
consensus_14993#2 ------------------------------------------------------------
consensus_14993#0 ---------------------
consensus_14993#3 ---------------------
consensus_14993#1 GAGGAGGAGGGGAGGGGCGGC 1078
consensus_14993#2 ---------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||