These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15026#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1939 fasta sequence [CGTCCCGCGGCCACCATCACCACCACCACCACCACCCACCTCCTCTCCTCCCGGATCCGAGATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC-TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGA-GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAGGAGACCCCCGGATCTGGCGCGCCCGCCCCCACCAGGAAGCCACCCTTG-CCCGCCGGAGGCGGCGGCGGCGGCGGCGGCGGATGGGATGACTGGGACGACGATTTCCGGCCCGACATGAGGAGGAACCAGTCGGTGGGGTCGTTCGGTGAGTCGGGGGCGGAATCAGGGAGGCAGCCGCCGAGGTCCAAATCGACGCAGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAAGGACAGCTTCTTCGCCAGGAGGATGGCGGAGAACGAGTCGAAGCCCGAGGGGATCCCGCCCTCGCAGGGTGGGAAATACGTCGGGTTCGGCTCCAGCCCGGCGCCGTCGGCGAATCGGAACGGCGCTGCTGCTCAGGGTGATGTCATGCAGGTCGTCTCCCAGGGAATTGGACGGCTTTCACTAGTTGCAGCATCTGCTGCCCAGTCTGCTGCCAGTGTTGTCCAAGTTGGCACAAAAGAGTTCCAATCAAAGATGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAACCGCAGAGATTGGAAGTAGAACATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGTCACAAAAGGTTGAGGAGTATGCCAAGGAAGGTGGGAATGGCTGGGGGGATGATTGGCAACGCAGGGAGCAGGGCAGTGAGCCTTACCATAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATACTAAAAGGGTCAAGTA-AAA-GAGTTTGTGTTTTTGTACGTTGTTTACAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCATATTCTTTATTGTTT-CAACTGCTTTTTTTTTTCTTTTTTCCTTTTTTCTTTTTTGTCTTGGACCTCCTACAGCTGTATCAGCTCTT-CCATTATTTGCTCTAGTTGATAGTCTGTCCAAAAGGCCAGTGTGTAACATGTTCCATATCGGTTGGCTGTGTTGTTATAGTGCTTTTCTTTGTTTGGCGCCAATCCACCCAACTTGATGAGGCACTGATAGGCTTTACGTCCTTTGTTATTGCCTACTTTCTCGACATC] [+] EMBL CB677618 [CGTCCCGCGGCCACCATCACCACCACCACCACCACCCACCTCCTCTCCTCCCGGATCCGAGATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGA GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAGGAGACCCCCGGATCTGGCGCGCCCGCCCCCACCAGGAAGCCACCCTTG CCCGCCGGAGGCGGCGGCGGCGGCGGCGGCGGATGGGATGACTGGGACGACGATTTCCGGCCCGACATGAGGAGGAACCAGTCGGTGGGGTCGTTCGGTGAGTCGGGGGCGGAATCAGGGAGGCAGCCGCCGAGGTCCAAATCGACGCAGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAAGGACAGCTTCTTCGCCAGGAGGATGGCGGAGAACGAGTCGAAGCCCGAGGGGATCCCGCCCTCGCAGGGTGGGAAATACGTCGGGTTCGGCTCCAGCC ] [+] EMBL CB637251 [ ACCATCACCACCACCACCACCACCCACCTCCTCTCCTCCCGGATCCGAGATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGA GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAGGAGACCCCCGGATCTGGCGCGCCCGCCCCCACCAGGAAGCCACCCTTGNCCCGCCGGA GCGGCGGCGGCGGCGGCGGCGGATGGGATGACTGGGACGACGATTTCC ] [+] EMBL AU056423 [ CCATCACCACCACCACCACCACCCACCTCCTCTCCTCCCGGATCCGAGATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAG GAAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCANTTCCGCAAGATGGAGGCCGGCGGCAACGACCGCCTTCAACGCCTTCCTCGCCGCGCGGGGC TGCCCAAGGAGGACCCCCCANGTCGCCAAGTACAACTCCA ] [+] EMBL CB639148 [ CACCACCACCACCCACCTCCTCTCCTCCCGGATCCGAGATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGTATTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAACTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAAGA GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAAGACACCCCCGGAT ] [+] EMBL CB664805 [ CCACCCACCTCCTCTCCTCCCGGATCCGAGATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGA GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAGGAGACCCCCGGATCTGGCGCGCCCGCCCCCACCAGGAAGCCACCCTTG CCCGCCGGAGGCGGCGGCGGCGGCGGCGGCGGATGGGATGACTGGGACGACGATTTCCGGCCCGACATGAGGAGGAACCAGTCGGTGGGGTCGTTCGGTGAGTCGGGGGCGGAATCACGGAGGCAGCCGCCGAGGTCCAAATCGACGCAGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAATGACAGCTTCTTCGCCAGGAGGATGGCGGAGAACGAGTCGAAGCCCGAGGG ] [+] EMBL CB664846 [ CCACCCACCTCCTCTCCTCCCGGATCCGAGATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGA GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAGGAGACCCCCGGATCTGGCGCGCCCGCCCCCACCAGGAAGCCACCCTTG CCCGCCGGAGGCGGCGGCGGCGGCGGCGGCGGATGGGATGACTGGGACGACGATTTCCGGCCCGACATGAGGAGGAACCAGTCGGTGGGGTCGTTCGGTGAGTCGGGGGCGGAATCAGGGAGGCAGCCGCCGAGGTCCAAATCGACGCAGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAAGGACAGCTTCTTCGCCAGGAGGATGGCGGAGAACGAGT ] [+] EMBL AK070052 [ GGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGA GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAGGAGACCCCCGGATCTGGCGCGCCCGCCCCCACCAGGAAGCCACCCTTG CCCGCCGGAGGCGGCGGCGGCGGCGGCGGCGGATGGGATGACTGGGACGACGATTTCCGGCCCGACATGAGGAGGAACCAGTCGGTGGGGTCGTTCGGTGAGTCGGGGGCGGAATCAGGGAGGCAGCCGCCGAGGTCCAAATCGACGCAGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAAGGACAGCTTCTTCGCCAGGAGGATGGCGGAGAACGAGTCGAAGCCCGAGGGGATCCCGCCCTCGCAGGGTGGGAAATACGTCGGGTTCGGCTCCAGCCCGGCGCCGTCGGCGAATCGGAACGGCGCTGCTGCTCAGGGTGATGTCATGCAGGTCGTCTCCCAGGGAATTGGACGGCTTTCACTAGTTGCAGCATCTGCTGCCCAGTCTGCTGCCAGTGTTGTCCAAGTTGGCACAAAAGAGTTCCAATCAAAGATGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAACCGCAGAGATTGGAAGTAGAACATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGTCACAGAAGGTTGAGGAGTATGCCAAGGAAGGTGGGAATGGCTGGGGGGATGATTGGCAACGCAGGGAGCAGGGCAGTGAGCCTTACCATAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATACTAAAAGGGTCAAGTA AAA GAGTTTGTGTTTTTGTACGTTGTTTACAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCATATTCTTTATTGTTT CAACTGCTTTTTTTTTTCTTTTTTCCTTTTTTCTTTTTTGTCTTGGACCTCCTACAGCTGTATCAGCTCTT CCATTATTTGCTCTAGTTGATAGTCTGTCCAAAAGGCCAGTGTGTAACATGTTCCATATCGGTTGGCTGTGTTGTTATAGTGCTTTTCTTTGTTTGGCGCCAATCCACCCAACTTGATGAGGCACTGATAGGCTTTACGTCCTTTGTTATTGCCTACTTTCTCGACATC] [+] EMBL CB637620 [ acaagGGTGATGGCGTCGACCGCGGCGAGGCGGCTACGGGAGCTGCAGGGGCAGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCTCGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACATCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGGAGGCCGGCGGCAACGACCGCC TCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGA GACCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCGCCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAAGAAACCCCCGGA ] [+] EMBL AY224461 [ cGCGGCGGCGGCGGCGGCGGCGGATGGGATGACTGGGACGACGATTTCCGGCCCGACATGAGGAGGAACCAGTCGGTGGGGTCGTTCGGTGAGTCGGGGGCGGAATCAGGGAGGCAGCCGCCGAGGTCCAAATCGACGCAGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAAGGACAGCTTCTTCGCCAGGAGGATGGCGGAGAACGAGTCGAAGCCCGAGGGGATCCCGCCCTCGCAGGGTGGGAAATACGTCGGGTTCGGCTCCAGCCCGGCGCCGTCGGCGAATCGGAACGGCGCTGCTGCTCAGGGTGATGTCATGCAGGTCGTCTCCCAGGGAATTGGACGGCTTTCACTAGTTGCAGCATCTGCTGCCCAGTCTGCTGCCAGTGTTGTCCAAGTTGGCACAAAAGAGTTCCAATCAAAGATGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAACCGCAGAGATTGGAAGTAGAACATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGTCACAAAAGGTTGAGGAGTATGCCAAGGAAGGTGGGAATGGCTGGGGGGATGATTGGCAACGCAGGGAGCAGGGCAGTGAGCCTTACCATAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGG ] [+] EMBL AU176493 [ CCAAATCGACGCAGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAAGGACAGCTTCTTCGCCAGGAGGATGGCGGAGAACGAGTCGAAGCCCGAGGGGATCCCGCCCTCGCAGGGTGGGAAATACGTCGGGTTCGGCTCCAGCCCGGCGCCGTCGGCGAATCGGAACGGCGCTGCTGCTCAGGGTGATGTCATGCAGGTCGTCTCCCAGGGAATTGGACGGCTTTCACTAGTTGCAGCATCTGCTGCCCAGTCTGCTGCCAGTGTTGTCCAAGTTGGCACAAAAGAGTTCCAATCAAAGATGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAACCGCAGAGATTGGAAGTAGAACATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGT ] [-] EMBL CB664847 [ tgnCAGCATCTGCTGCCCAGTCTGCTGCCAGTGTTGTCCAAGTTGGCACAAAAGAGTTCCAATCAAAGATGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAACCGCAGAGATTGGAAGTAGAACATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGTCACAAAAGGTTGAGGAGTATGCCAAGGAAGGTGGGAATGGCTGGGGGGATGATTGGCAACGCAGGGAGCAGGGCAGTGAGCCTTACCATAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATACTAAAAGGGTCAAGTA AAA GAGTTTGTGTTTTTGTACGTTGTTTACAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACTGTCATCACAAGTACTAAGAAATGTCAAATTGAAACTGTAATCT ] [-] EMBL CB664806 [ CTGCTGCCAGTGTTGTCCAAGTTGGCACAAAAGAGTTCCAATCAAAGATGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAACCGCAGAGATTGGAAGTAGAACATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGTCACAAAAGGTTGAGGAGTATGCCAAGGAAGGTGGGAATGGCTGGGGGGATGATTGGCAACGCAGGGAGCAGGGCAGTGAGCCTTACCATAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTCTCAGGATGGTTCATCAAAGAATTTCAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGTGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGACCCCCCGGTGGCTCCTATTGGCCGCAAGGCGGCTTCCCCTGAGGTTGATTTCTTTCTAGAGATATATTATGCTTGGAGAAGTTATATATCCCAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATACTAAAAGGGTCAAGTA AAA GAGTCTGTGTTTGGGTATGTTGTTTCCAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGACACTGTCATCACAAGGGCTAAGAAATGTCAAAT ] [-] EMBL CB677619 [ AATCAAAGATGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAACCGCAGAGATTGGAAGTAGACCATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGTCACAAAAGGTTGAGGAGTATGCCAAGGAAGGTGGGAATGGCTGGGGGGATGATTGGCAACGCAGGGAGCAGGGCAGTGAGCCTTACCATAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTTTCATGATGGTTCATCAAAGAATTCCAATTCCAATTTCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGTGAAAGAACGCCAAAGCAGTGACTCCTGGTCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGACCGGAACCCCCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTACACTTGGAGAAGTTATATATGCCAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATATTAAAAGGGTCAAGTATAAACGAG CTG GCTTTTATTCGTTGTTTCCACCTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGATCATGTGTAACTGTCATCACAATTAGTAAGAAATGTCAAATTGAAACTGTAATGTGCACAAACTTCCTCTCAT ] [-] EMBL CB637252 [ GAATTACAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATACTAAAAGGGTCAAGTA AAA GAGTTTGTGTTTTTGTACGTTGTTTACAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCATATTCTTTATTGTTTCCAACTGCTTTTTTTTTTCTTTTTTCCTTTTTTCTTTTTTGTCTTGGACCTCCTACAGCTGTATCAGCTTTTCCCATTATTTGCTCTAGTTGAT ] [+] EMBL AU176494 [ GGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCAGAAAGTGTGAGCGTCCGATGGTCCGTATCATTCAGGATACTAAAAGGGTCAAGTA AAA GAGTTTGTGTTTTTGTACGTTGTTTACAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCAaaaaa ] consensusID : consensus_15026#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1010 fasta sequence [GGGCAGTGAGCCTTACCTAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGCTGAAGCTGCGTGGTTGGAAGGCGCTGGTTTGGGTTGCTGCCCTCGTTGTTTGTGCCTGACCTGAGATGCTTGCCTGAGACATGCCTGTACCTTGTTTTGGTTGGCGTCCTTGGGTGTNTCCTGCGGTAGCCTGACCTGACAGCTAACCGCTTTGATTAGCCTGGCTCAGGCGACGAAATTCCAACGCCTGACTCAGACAAGTGAGAAGCTAGCAAGATTAAGGGTGATGTGAAAGCTATGGGTCCCACTATTAATTACATACTTTTTCTTTTTCTTGCTTTTTTCATTCTTCCCACCGATTGATCATGTTTGTTGAGTTAATATTATCTGTTAAGAGTAATTATTACAGTTTGACGTTGCATTATTCTTCTCAGGCACACGGTTCAAACCAAACAACTCATCTCACAGGCTGCCTGGTCAGGCAAATGTCTTCAAACTTTCAGGCTAGCTTCAGGCATGAGTTTTCATCAGGCATGTGTGTCAGGTCACCAACCAAACAGGCCCTGAGTCCACTCTTGGAAGGTTTTGTTGCATGGAATGTGAGGCTGGTTGGATCGAAGCTGTCTTGGCATTTGACCGAAAAGACAAATTTTTGCTCGGATACAATCGTTATCATCATGAACAGCAACACAATTGCAGTTGTAAGCAAACATTGTTGCGATCAAATCAAACTCGCAGAATAAATATAAAACCAGAACTTGTATAGTTTAAAAAAA] [+] EMBL CF309198 [GGGCAGTGAGCCTTACCTAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGAATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGGATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCGGCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGGGGAGCAATCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGCTGAAGCTGCGTGGTTGGAAGGCGCTGGTTTGGGTTGCTGCCCTCGTTGTTTGTGCCTGACCTGAGATGCTTGCCTGAGACATGCCTGTACCTTGTTTTGGTTGGCGTCCTTGGGTGTNTCCTGCGGTAGCCTGACCTGACAGCTAACCGCTTTGATTAGCCTGGCTCAGGCGACGAAATTCCAACGCCTGACTCAGACAAGTGAGAAGCTAGCAAGATTAAGGGTGATGTGAAAGCTATGGGTCCCACTATTAA ] [-] EMBL CF309199 [ AATTCCAACGCCTGACTCAGACAAGTGAGAAGCTAGCAAGATTAA GGTGATGTGAAAGCTATGGGTCCCACTATTAATTACATACTTTTTCTTTTTCTTGCTTTTTTCATTCTTCCCACCGATTGATCATGTTTGTTGAGTTAATATTATCTGTTAAGAGTAATTATTACAGTTTGACGTTGCATTATTCTTCTCAGGCACACGGTTCAAACCAAACAACTCATCTCACAGGCTGCCTGGTCAGGCAAATGTCTTCAAACTTTCAGGCTAGCTTCAGGCATGAGTTTTCATCAGGCATGTGTGTCAGGTCACCAACCAAACAGGCCCTGAGTCCACTCTTGGAAGGTTTTGTTGCATGGAATGTGAGGCTGGTTGGATCGAAGCTGTCTTGGCATTTGACCGAAAAGACAAATTTTTGCTCGGATACAATCGTTATCATCATGAACAGCAACACAATTGCAGTTGTAAGCAAACATTGTTGCGATCAAATCAAACTCGCAGAATAAATATAAAACCAGAACTTGTATAGTTTAAAAAAA] consensusID : consensus_15026#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 446 fasta sequence [GGGAGCAATCCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCCAGAAAGTGTGAGCGTCCCGATGGTCCGTATCATTCCAGGATACTAAAAGGGTCAAGTAAAAGAGTTTGTGTTTTTGTACGTTGTTTACAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCATATTCTTTATTGTTTCAACTGCTTTTTTTTTTCTTTTTTCCTTTTTTCTTTTTTGTCTTGGACCTCCTACAGCTGTATCAGCTCTTCCATTATTTGCTCTAGTTGATAGTCTGTCCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101714 [GGGAGCAATCCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGAGGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCCAGAAAGTGTGAGCGTCCCGATGGTCCGTATCATTCCAGGATACTAAAAGGGTCAAGTAAAAGAGTTTGTGTTTTTGTACGTTGTTTACAACTATGTCTAGTGGTATGTTCCGGGGTCAATGGGGCTCATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCATATTCTTTATTGTTTCAACTGCTTTTTTTTTTCTTTTTTCCTTTTTTCTTTTTTGTCTTGGACCTCCTACAGCTGTATCAGCTCTTCCATTATTTGCTCTAGTTGATAGTCTGTCCAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA765543 [ CTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAATCTACACAAACTTCCTCTCATATTCTTTATTGTTTCAACTGC TTTTTTTTTCTTTTTTCCTTTTTTCTTTTTTGTCTTGGACCTCCTACAGCTGTATCAGCTCTTCCATTATTTGCTCTAGTTGATAGTCTGTCCAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15026#0 CGTCCCGCGGCCACCATCACCACCACCACCACCACCCACCTCCTCTCCTCCCGGATCCGA 60 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 GATCCGATCCGGCGGCGATGGCGTCGACGGCGGCGAGGCGGCTACGGGAGCTGCAGGGGC 120 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 AGGCGGGGAACAAGACGTGCGTGGACTGCGCGCAGCGGAACCCGCAGTGGGCGAGCGTCT 180 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 CGTACGGGGTGTTCATGTGCCTCGAGTGCTCGGGCAAGCACCGGGGGCTCGGCGTGCACA 240 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 TCAGCTTCGTCCGCTCCGTCACCATGGACTCGTGGACCGAGGCGCAGCTCCGCAAGATGG 300 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 AGGCCGGCGGCAACGACCGCCTCAACGCCTTCCTCGCCGCGCGGGGCGTGCCCAAGGAGA 360 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 CCCCCCACGTCGCCAAGTACAACTCCAACGCCGCCGCCGCGTACCGCGACCGCATCGTCG 420 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 CCGTCGCCGAGGGCCGCCCGTGGACCGACCCGCCCGTCGTGAAGGAGACCCCCGGATCTG 480 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 GCGCGCCCGCCCCCACCAGGAAGCCACCCTTGCCCGCCGGAGGCGGCGGCGGCGGCGGCG 540 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 GCGGATGGGATGACTGGGACGACGATTTCCGGCCCGACATGAGGAGGAACCAGTCGGTGG 600 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 GGTCGTTCGGTGAGTCGGGGGCGGAATCAGGGAGGCAGCCGCCGAGGTCCAAATCGACGC 660 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 AGGACATGTACACGAGGCAGCAGCTGGAGGCGTCGGCGGCCAACAAGGACAGCTTCTTCG 720 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 CCAGGAGGATGGCGGAGAACGAGTCGAAGCCCGAGGGGATCCCGCCCTCGCAGGGTGGGA 780 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 AATACGTCGGGTTCGGCTCCAGCCCGGCGCCGTCGGCGAATCGGAACGGCGCTGCTGCTC 840 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 AGGGTGATGTCATGCAGGTCGTCTCCCAGGGAATTGGACGGCTTTCACTAGTTGCAGCAT 900 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 CTGCTGCCCAGTCTGCTGCCAGTGTTGTCCAAGTTGGCACAAAAGAGTTCCAATCAAAGA 960 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 TGAGGGAAGGGGGCTATGATCAGAAGGTGAATGAAACTGTAAATGTTGTTGCCAATAAAA 1020 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 CCGCAGAGATTGGAAGTAGAACATGGGGAATTATGAAAGGGGTAATGGCGTTAGCGTCAC 1080 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 AAAAGGTTGAGGAGTATGCCAAGGAAGGTGGGAATGGCTGGGGGGATGATTGGCAACGCA 1140 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ------------------------------------------------------------ consensus_15026#0 GGGAGCAGGGCAGTGAGCCTTACCATAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGA 1200 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 -------GGGCAGTGAGCCTTACC-TAGGTTTGAGCGTGAGACCAATGGTAATGGGTGGA 52 consensus_15026#0 ATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGG 1260 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ATTCTTCTTCTCATGATGGTTCATCAAAGAATTACAATTCCAATTCCTGGGATGATTGGG 112 consensus_15026#0 ATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCG 1320 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ATGAGCCAGTCAAGAAGGATGAGCCTGCGAAAGAACGCCAAAGCAGTGACTCCTGGGCCG 172 consensus_15026#0 GCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGG 1380 consensus_15026#2 -----------------------------------------------------------G 1 consensus_15026#1 GCTGGGATGATGGGAAGGATGACAATTTTGATAGTTACAATCACAGCACCCCCAGCAAGG 232 * consensus_15026#0 GGAGCAATC-AGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGA 1439 consensus_15026#2 GGAGCAATCCAGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGA 61 consensus_15026#1 GGAGCAATC-AGAACGGAACCACCGGTGGCTCCTATTGGACGGAAGGCGGCTTCCGCTGA 291 ********* ************************************************** consensus_15026#0 GGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCC-AGAAAGTGT 1498 consensus_15026#2 GGTTGATTTCTTTCTAGAGATATATTATACTTGGAGAAGTTATATATGCCCAGAAAGTGT 121 consensus_15026#1 GGCTGAAGCTGCGTGGTTGGAAGGCGCTGGTTTGGGTTGCTGCCCTCGTTGTTTGTGCCT 351 ** *** * * * ** * * * * * * * consensus_15026#0 GAGC-GTCC-GATGGTCCGTATCATTC-AGGATACTAAAAGGGTCAA-GTAAAAGAGTTT 1554 consensus_15026#2 GAGC-GTCCCGATGGTCCGTATCATTCCAGGATACTAAAAGGGTCAA-GTAAAAGAGTTT 179 consensus_15026#1 GACCTGAGATGCTTGCCTGAGACATGCCTGTACCTTGTTTTGGTTGGCGTCCTTGGGTGT 411 ** * * * * * * * *** * * * * *** ** * ** * consensus_15026#0 GTGTTTTTGTACGTTG--TTTACAACTA----TGTCTAGTGGTATGTTCCGGGGTCAATG 1608 consensus_15026#2 GTGTTTTTGTACGTTG--TTTACAACTA----TGTCTAGTGGTATGTTCCGGGGTCAATG 233 consensus_15026#1 NTCCTGCGGTAGCCTGACCTGACAGCTAACCGCTTTGATTAGCCTGGCTCAGG--CGACG 469 * * *** ** * *** *** * * * * ** * ** * * * consensus_15026#0 GGGCTC----ATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAA 1664 consensus_15026#2 GGGCTC----ATCTGAAACTGTCATCACAATTACTAAGAAATGTCAAATTGAAACTGTAA 289 consensus_15026#1 AAATTCCAACGCCTGACTCAGACAAGTGAGAAGCTAGCAAGATTAAGGGTGATG-TGAAA 528 ** **** * * ** * *** ** * * *** ** ** consensus_15026#0 TCTACA---CAAACTTCCTCTCATATTCTTTATTGTTTCAACTGCTTTTTTTTTTCTTTT 1721 consensus_15026#2 TCTACA---CAAACTTCCTCTCATATTCTTTATTGTTTCAACTGCTTTTTTTTTTCTTTT 346 consensus_15026#1 GCTATGGGTCCCACTATTAATTACATACTTT-TTCTTTTTCTTGCTTTTTTCATTCTTCC 587 *** * *** * * ** **** ** *** ********* ***** consensus_15026#0 TTCCTTTTT----TCTTTTTTGTCTTGG----ACCTCCTA----CAGCTGTATCAGCTCT 1769 consensus_15026#2 TTCCTTTTT----TCTTTTTTGTCTTGG----ACCTCCTA----CAGCTGTATCAGCTCT 394 consensus_15026#1 CACCGATTGATCATGTTTGTTGAGTTAATATTATCTGTTAAGAGTAATTATTACAGTTTG 647 ** ** * *** *** ** * ** ** * * * *** * consensus_15026#0 TCCATTATTTGCTCTAGTT-GATAGTCTGTCCAAAA-GGCCAGTGTGTAACATGTTCCAT 1827 consensus_15026#2 TCCATTATTTGCTCTAGTT-GATAGTCTGTCCAAAA-AAAAAAAAAAAAAAAAA------ 446 consensus_15026#1 ACGTTGCATTATTCTTCTCAGGCACACGGTTCAAACCAAACAACTCATCTCACAGGCTGC 707 * * ** *** * * * * ** **** * * consensus_15026#0 ATCGGTTGGCTGTGTTGTTATAGTGCTTTTCTTTGTTTGGCGCCAATCCACCCAACTTGA 1887 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 CTGGTCAGGCAAATGTCTTCAAACTTTCAGGCTAGCTTCAGGCATGAGTTTTCATCAGGC 767 consensus_15026#0 TGAGGCACTGATAGGCTTTACGTCCTTTGTTATTGCCTACTTTCTCGACATC-------- 1939 consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 ATGTGTGTCAGGTCACCAACCAAACAGGCCCTGAGTCCACTCTTGGAAGGTTTTGTTGCA 827 consensus_15026#0 ------------------------------------------------------------ consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 TGGAATGTGAGGCTGGTTGGATCGAAGCTGTCTTGGCATTTGACCGAAAAGACAAATTTT 887 consensus_15026#0 ------------------------------------------------------------ consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 TGCTCGGATACAATCGTTATCATCATGAACAGCAACACAATTGCAGTTGTAAGCAAACAT 947 consensus_15026#0 ------------------------------------------------------------ consensus_15026#2 ------------------------------------------------------------ consensus_15026#1 TGTTGCGATCAAATCAAACTCGCAGAATAAATATAAAACCAGAACTTGTATAGTTTAAAA 1007 consensus_15026#0 --- consensus_15026#2 --- consensus_15026#1 AAA 1010 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||