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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1096 fasta sequence
[GAGTAGAAAACTGGTCCTGTGGGCTTTTAAGCGGCGTCGCCGGTGGCCACGCACGCACCCAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCACGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTGAAGACGCCTACTGATGAGCGTTACTTGGGGGAACAGGGTTGGGTATCAAGTTGACCTGCGGGCTGCTGAATGACTGTGGCAGGTAATTATAATTTGGATGCTAATTAGGTACGGGCTTATAATGTGTTAAGTCCTTCTTGTTGTTTTATTATATGCACTGAGTCTTGTGTTGTGAAGTTCATGTGTGTAACTTGGGATTCCGTATTTTTTGTAAAACCGGTGTGTATTTTCTATTTTCATCGTCGTCTATGACGGGCGCGCCGTTCGTCGTGCGATAAAGTGGGCCTTGGCCGTCCGTGTATCTCGTTATGTTCTTGGTCCGCGACGTGGAGGGGGGTGGCGCCGCTGCTCTGATTTGCTAGTTTTCTGCCTGGTCATCATTATTTTCCGCGGCTTTGCCCTCGCCCGCCCTTTTTGTTGTTTTTTATCTTGCGCCGGTCTAATACTTGTCGGTGCGATCGCTGTCTGGTCGGATGGGGCTTGTTGGATTCTCGCTGCTTCCTTGCCTTGATTCTTACGCTGCCCGCTGGGTGTTAGATCAAGTGCGGATCAAAATGAGTGCAGACGCGGCGCACCCGTTG]
[+] EMBL CF333285 [GAGTAGAAAACTGGTCCTGTGGGCTTTTAAGCGGCGTCGCCGGTGGCCACGCACGCACCCAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCACGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTG ]
[+] EMBL BE039661 [ CCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTGCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTGAAGACGCCTACTGATGAGCGTTACTTGGGGGAACAGGGTTGGGTATCAAGTTGACCTGCGGGCTGCTGAATGACTGTGGCAGGTAATTATAATTTGGATGCTAATTAGGTACGGGCTTATAATGTGTTAAGTCCTTCTTGTTGTTTTATTATATGCACTGAGTCTTGTGTTGTGAAGTTCATGTGTGTAACTTGGGATTCCGTATTTTTTGTAAAACCGGTGTGTATTTTCTATTTTCATCGTCGTCTATGACGGGCGCGCCGTTCGTCGTGCGATAAAGTGGGCCTTGGCCGTCCGTGTATCTCGTTATGTTCTTGGTCCGCGACGTGGAGGGGGGTGGCGCCGCTGCTCTGATTTGCTAGTTTTCTGCCTGGTCATCATTATTTTCCGCGGCTTTGCCCTCGCCCGCCCTTTTTGTTGTTTTTTATCTTGCGCCGGTCTAATACTTGTCGGTGCGATCGCTGTCTGGTCGGATGGGGCTTGTTGGATTCTCGCTGCTTCCTTGCCTTGATTCTTACGCTGCCCGCTGGGTGTTAGATCAAGTGCGGATCAAAATGAGTGCAGACGCGGCGCACCCGTTG]
consensusID : consensus_15031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence
[ACTACTAGCCCATAACAAAATGAACGGTCAATTGCTAGGTGGATTGAGCTCTGATTGAATGGTCAGGCTGTTTAGATTTTCCTCAATTATCGTCACTTGAGAGGTAAGCTGTTTACTGACGGATATATGTTGGAACACTGCATATGGCATGTTGTCGGGTAAAATAGCGTAGTTATTAAGACCATGACCGCTTTGTTTGTTACTTGATGTGAAATGATTTCTAGAAATGTTGCTACTATGCTGAAGCAGATGTCCTTTCAAAGATATTATTAAACTCTAGTTTCCATCCAGGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTTCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAAGCACTACAAAATAATGAATAAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGG]
[-] EMBL CB663476 [ACTACTAGCCCATAACAAAATGAACGGTCAATTGCTAGGTGGATTGAGCTCTGATTGAATGGTCAGGCTGTTTAGATTTTCCTCAATTATCGTCACTTGAGAGGTAAGCTGTTTACTGACGGATATATGTTGGAACACTGCATATGGCATGTTGTCGGGTAAAATAGCGTAGTTATTAAGACCATGACCGCTTTGTTTGTTACTTGATGTGAAATGATTTCTAGAAATGTTGCTACTATGCTGAAGCAGATGTCCTTTCAAAGATATTATTAAACTCTAGTTTCCATCCAGGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTTCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAAGCACTACAAAATAATGAATAAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGG]
consensusID : consensus_15031#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 776 fasta sequence
[TTCCTCGAGCACTGTTGGCCTACTGGAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA-TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC-TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA-GTTACCTGGAACAGGTG-AGTACAACAAGTTCTAT-GGTGATGGGGTCTAC-A-ACTGTGCTGGCTGTGGAACA-CCCCTGTACAAATCCAC-AACC-AAGTTTGATTCTGGTTGTGGCTGGCCAGCA-TTTTTTGAGGGACTTCCT-GGAGCCATAAACCGAACA-CCGGATCCTGATGGAAGGAGGGTAGAAATCACG-TGTGCAGCTTGCGG-TGGGCATTT--GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA-GCACTA-CAAAATAATGAAT-AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA-TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109429 [TTCCTCGAGCACTGTTGGCCTACTGGAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK068764 [ TCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAAT ]
[+] EMBL AU069665 [ TTCTCCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCAA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGA NNACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGTGG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTNATTCTGGTTGTGGCTGGCCAGCA TTTTTTAAGGGACTTCCT GGAGCCATAAACNGAACA CCGGATCCTAATGGAAGGAGGGTAGAAATCACG TGTGCAGTTTNCGGTTGGGCATTTTGGGGTCACGTGTTCAAAGGAGAAAGGTTCAAGACGCC ]
[+] EMBL AY224463 [ CTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCC ]
[+] EMBL CA754650 [ CCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CNAAATAATGAAT AAAATCACAGAGACTTATCCTGTNTGTCCATATATGAATTCATCTCCTGTTA ]
[+] EMBL OS07302A [ CGCGCGCCGCCCGCGATTGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGACNGCTGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCNGCCTCAAGGGCACCGANGTTACCTGGAACA GTGAAGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGGATTTTTTTGAGGGACTTCCTGGGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACGTTGTGCAGCTTGCG ]
[-] EMBL CF333286 [ GCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGGTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACACCCCCTGTACAAATCCAC AACCAAAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAA ]
[+] EMBL BI795312 [ TACAACAAGTTCTAT GTTGATGGGGTCTAC A ACTGTGCT GCTGTGGAACA CCCCTGTACAAATCCACAAACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGTACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAA ]
[+] EMBL BI798447 [ AGTTCTATGGGTGATGGGGTCTAC ACACTGT CT GCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGTACACCCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAACGCCCTACCCAAATAATGAATGAAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACACTTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGCTTCATTAGTTAAAAAAAAAA ]
[+] EMBL BI807996 [ GTTCTAT GTGATGGGGTCTACAA ACTGTGCTGCCTGTGGAACA CCCCTGTAC AATCCAC AACC AAGTTTGATTCT GTTGTGGCTGCCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTT C G TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA C AAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTA AAAAAAAAA ]
[+] EMBL AU164580 [ CCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAAaaa ]
[+] EMBL AU182190 [ C AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAA ]
[+] EMBL C98118 [ CA CCGGATCCTGATGGAANGAGGGTAGAAATCACG TGTNCCGCTTGCGG TGGGCNTTT GGGTCNCGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGNCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAACTAATGAAT AAAATCNCNGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAaa ]
[+] EMBL BQ908207 [ AGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAA ]
consensusID : consensus_15031#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence
[CTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANCGACGANGANTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTNCAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGANCCATAAACCGAACACCGGATCCTGATGGAAGGANGGTNGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAANGANAAAGCTCAAGACCCTACTGATAACGTCACTGTGTGAACANTGTTTCGATCAANTTCACCCCGGCTCCTAAATCCTTTCCCAAGTCATTATTATTGGAAGTGAATTCCCCANGGGTNAAACTNNTGGAAANCCCTNCNAATAATGAATNAAATCCCNNAAACTTCCCGGTTTGTCCANATATGAANTCCCCCCCNGTTAATTAACNGTTAAC]
[+] EMBL BE228261 [CTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANCGACGANGANTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTNCAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGANCCATAAACCGAACACCGGATCCTGATGGAAGGANGGTNGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAANGANAAAGCTCAAGACCCTACTGATAACGTCACTGTGTGAACANTGTTTCGATCAANTTCACCCCGGCTCCTAAATCCTTTCCCAAGTCATTATTATTGGAAGTGAATTCCCCANGGGTNAAACTNNTGGAAANCCCTNCNAATAATGAATNAAATCCCNNAAACTTCCCGGTTTGTCCANATATGAANTCCCCCCCNGTTAATTAACNGTTAAC]
consensusID : consensus_15031#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[CGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANNCCCGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGATTTCCATCCAGGTTACCTGGAACAGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATTCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACANCGGATCCTGATGGAAGGAGGGTAGAAATC]
[+] EMBL OSR0579A [CGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANNCCCGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGATTTCCATCCAGGTTACCTGGAACAGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATTCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACANCGGATCCTGATGGAAGGAGGGTAGAAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15031#0 GAGTAGAAAACTGGTCCTGTGGGCTTTTAAGCGGCGTCGCCGGTGGCCACGCACGCACCC 60
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 ------------------------------------------------------------
consensus_15031#2 -----------------------------------TTCCTCGAGCACTGTTGGCCTACTG 25
consensus_15031#1 ------ACTACTAGCCC-ATAACAAAATGAACGGT-CAATTGCTAGGTGGATTGAGCTCT 52
consensus_15031#0 -AACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGT 119
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 ---------------CTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGT 45
consensus_15031#2 GAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGT 85
consensus_15031#1 GATTGAATGGTCAGGCTGTTTAGATTTTCCTCAATTATCG--TCACTTGAGAGGTAAGCT 110
consensus_15031#0 GTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCC---CACGATGGCG 176
consensus_15031#4 ------------------------------------CGCGCGCCGCC---CGCGATGGCG 21
consensus_15031#3 GTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCC---CGCGATGGCG 102
consensus_15031#2 GTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCC---CGCGATGGCG 142
consensus_15031#1 GTT-TACTGACGGATATATGTTGGAACACTGCATATGGCATGTTGTCGGGTAAAATAGCG 169
** * * * ** ***
consensus_15031#0 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGAGCGACGAGGAGTGGC--------GCG 225
consensus_15031#4 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGANNCCCGAGGAGTGGC--------GCG 70
consensus_15031#3 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGANCGACGANGANTGGC--------GCG 151
consensus_15031#2 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGAGCGACGAGGAGTGGC--------GCG 191
consensus_15031#1 TAGTTATTAAGACCATGACCGCTTTGTTTGTTACTTGATGTGAAATGATTTCTAGAAATG 229
* ** *** * ** * * * ** *
consensus_15031#0 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGA--------- 274
consensus_15031#4 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGATTTCCATCC 128
consensus_15031#3 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGA--------- 200
consensus_15031#2 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGA--------- 240
consensus_15031#1 TTGCTACTATGCTGAAGCAGATGTCCTTTCAAAGATATTATTAAACTCTAGTTTCCATCC 289
* * * ***** * * * * * * * *
consensus_15031#0 --GTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 332
consensus_15031#4 AGGTTACCTGGAACAG-TGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 187
consensus_15031#3 --GTTACCTGGAACAGGTGAGTNCAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 258
consensus_15031#2 --GTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 298
consensus_15031#1 AGGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 349
************** ***** *************************************
consensus_15031#0 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 392
consensus_15031#4 GGCTGTGGAACACCCCTGTACAAATTCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 247
consensus_15031#3 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 318
consensus_15031#2 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 358
consensus_15031#1 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 409
************************* **********************************
consensus_15031#0 GCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGG 452
consensus_15031#4 GCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACANCGGATCCTGATGGAAGGAGG 307
consensus_15031#3 GCATTTTTTGAGGGACTTCCTGGANCCATAAACCGAACACCGGATCCTGATGGAAGGANG 378
consensus_15031#2 GCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGG 418
consensus_15031#1 GCATTTTTTGAGGGACTTTCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGG 469
****************** ***** ************** ****************** *
consensus_15031#0 GTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGC 512
consensus_15031#4 GTAGAAATC--------------------------------------------------- 316
consensus_15031#3 GTNGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAANGANAAAGC 438
consensus_15031#2 GTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGC 478
consensus_15031#1 GTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGC 529
** ******
consensus_15031#0 TTGAAGACGCCTACTGATGAGCGTTACTTGGGGGAACAGGGTTGGGTATCAAGTTGACCT 572
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 TC-AAGAC-CCTACTGAT-AACGTCACT-GTGTGAACANTGTTTCG-ATCAANTTCACC- 492
consensus_15031#2 TTCAAGACGCCTACTGATGAGCGTCACT-GTGTGAACAGTGTTTCG-ATCAAGTTCACCC 536
consensus_15031#1 TTCAAGACGCCTACTGATGAGCGTCACT-GTGTGAACAGTGTTTCG-ATCAAGTTCACCC 587
consensus_15031#0 GCGGGCTGCTGAATGACTGTGGCAGGTAATTATAATTTGGATGCTAATTAGGTACGGGCT 632
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 -CCGGCTCCTAAATC-CTTTCCCAAGTCATTATTATT-GGAAGTGAATTCCCCANGGG-T 548
consensus_15031#2 -CGGCCTCCTAAATC-CTTTCCCAGGTCATTATTATT-GGAGGTGAATTCCCCA-GGGCT 592
consensus_15031#1 -CGGCCTCCTAAATC-CTTTCCCAGGTCATTATTATT-GGAGGTGAATTCCCCA-GGGCT 643
consensus_15031#0 TATAATGTGTTAAGTCCTTCTTGTTGTTTTATTATATGCACTGAGTCTTGTGTTGTGAAG 692
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 NAAACTNNTGGAAANCCCTNCNAATAATGAATNAAATCCCNNAAACTTCCCGGTTTG--- 605
consensus_15031#2 AAAGCTGTGGAAAGCACTACAAAATAATGAATAAAAT-CACAGAGACATATCCTGTTT-G 650
consensus_15031#1 AAAGCTGTGGAAAGCACTACAAAATAATGAATAAAAT-CACAGAGACATATCCTGTTT-G 701
consensus_15031#0 TTCATGTGTGTAACTTGGGATTCCGTATTTT-TTGTAAAACCGGTGTGTATTTTCTATTT 751
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 TCCANATATGAANTCCCCCCCNGTTAATTAA-CNGTTAAC-------------------- 644
consensus_15031#2 TCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGG 710
consensus_15031#1 TCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGG 761
consensus_15031#0 TCATCGTCGTCTATGACGGGCGCGCCGTTCGTCGTGCGATAAAGTGGGCCTTGGCCGTCC 811
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 ------------------------------------------------------------
consensus_15031#2 GAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAGG 770
consensus_15031#1 GAATGGTAAATGAATGAATAAATGAATCTGG----------------------------- 792
consensus_15031#0 GTGTATCTCGTTATGTTCTTGGTCCGCGACGTGGAGGGGGGTGGCGCCGCTGCTCTGATT 871
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 ------------------------------------------------------------
consensus_15031#2 CCACAT------------------------------------------------------ 776
consensus_15031#1 ------------------------------------------------------------
consensus_15031#0 TGCTAGTTTTCTGCCTGGTCATCATTATTTTCCGCGGCTTTGCCCTCGCCCGCCCTTTTT 931
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 ------------------------------------------------------------
consensus_15031#2 ------------------------------------------------------------
consensus_15031#1 ------------------------------------------------------------
consensus_15031#0 GTTGTTTTTTATCTTGCGCCGGTCTAATACTTGTCGGTGCGATCGCTGTCTGGTCGGATG 991
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 ------------------------------------------------------------
consensus_15031#2 ------------------------------------------------------------
consensus_15031#1 ------------------------------------------------------------
consensus_15031#0 GGGCTTGTTGGATTCTCGCTGCTTCCTTGCCTTGATTCTTACGCTGCCCGCTGGGTGTTA 1051
consensus_15031#4 ------------------------------------------------------------
consensus_15031#3 ------------------------------------------------------------
consensus_15031#2 ------------------------------------------------------------
consensus_15031#1 ------------------------------------------------------------
consensus_15031#0 GATCAAGTGCGGATCAAAATGAGTGCAGACGCGGCGCACCCGTTG 1096
consensus_15031#4 ---------------------------------------------
consensus_15031#3 ---------------------------------------------
consensus_15031#2 ---------------------------------------------
consensus_15031#1 ---------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||