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Oryza sativa
cluster # 15036 cluster # 15036       Sequences # 19       consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15036#0 length = 1468 sequences # 17  
 consensus_15036#1 length = 447 sequences # 1  
consensus_15036#2 length = 267 sequences # 1  
consensusID : consensus_15036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1468
fasta sequence 
                              [CNAACAACAGNCAGNGGAGCGGAGTTGATGGTGGTGGTGTCCGTCGCACGCCTCCCCCCAATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCCTCCGCGCTCCGCCTCACCCGCCCGCTCTCCTCCTCCTGCTCCGCGTCGCCGCTCGCCGTCGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCAACACATGGCAGATGCCTCAGGGTGGT-ATTGATG-CGGG-AGAGGAT-CCGAGGGAAGCTGCTTTCAGAGAATTGAGG-GAGGAAAC-GGGTGTTACAT-CTGCAGAAATGGTGGC-TGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACT-GGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATC-TGAGAGGCCGGAG-TTTTG-TGAA-TGGACA-TGGATGAC-ACCTCAGCAAGTTA-TTGAAAAGGCAGTTGAATTCAAAAAACCAGTA--T-ATGAGGCAG-CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC-TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTACCGTATTTCTACCTCCAACATCCTCTCAGTATGGAATTCTTAGAAAAGGACCAGAGAGTTTCTTTGACAACAAATATCAAGGCATGAAGGTTGCTGTGGCTTTTGTTGTGCGAGGACAAACTGCCCTTTATGCTTTGTACCGTGTCATGATATTGTCCCCTATAGAGAAAAGGAAATGTGGTTAGGAAGATGTATTGCTTGCTCCTCCACCTCCAGATGTGGCTCTGATTGTACAAGATTTGGAGTACCAGTAGCAGCATGAAGTGTGGGGATTCTTAAATGCCAATAAAGGTTGACCTCGAGCATTGGTGAGGAAAGCAAGTCGACTGAATTTACTAGTCCCTCATGAACTGCTTTATTTCATGTGTGTCTGCTTCTTTTCCCTCATGAACTTGCGCAGGCTTGATGCCTGCTAGTAGTAGTGTACTAGTACCTTACTAACTTCCACCCCTTTTCTTTCGTGAACCATTTAACTGCTGTGGTGTTTAGACAGAATAACTGAACTGAACACAAAAGTAGAGTATTGTACTACTTGTATTTACACCCTGAAGATGGATTATTTGGGTATC]

[+] EMBL OSC427               [CNAACAACAGNCAGNGGAGCGGAGTTGATGGTGGTGGTGTCCGTCNCACGCCTCCCCCCAATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCCTCCGCGCTCCGCCTCACCCGCCCGNTCTNCTCCTNCTGCTCCGCGTCGNCGCTCGCCGTCGTAGCCTCCATGGAGACGNCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCCTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK071345             [                                     TGTCCGTCGCACGCCTCCCCCCAATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCCTCCGCGCTCCGCCTCACCCGCCCGCTCTCCTCCTCCTGCTCCGCGTCGCCGCTCGCCGTCGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCAACACATGGCAGATGCCTCAGGGTGGT ATTGATG CGGG AGAGGAT CCGAGGGAAGCTGCTTTCAGAGAATTGAGG GAGGAAAC GGGTGTTACAT CTGCAGAAATGGTGGC TGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACT GGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATC TGAGAGGCCGGAG TTTTG TGAA TGGACA TGGATGAC ACCTCAGCAAGTTA TTGAAAAGGCAGTTGAATTCAAAAAACCAGTA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTACCGTAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA756052             [                                        CCGTCGCACGCCTCCCCCCAATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCCTCCGCGCTCCGCCTCACCCGCCCGCTCTCCTCCTCCTGCTCCGCGTCGCCGCTCGCCGTCGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCAACACATGGCAGATGCCTCAGGGTGGT ATTGATG CGGG AGAGGAT CCGAGGGAAGCTGCTTTCAGAGAATTGAGG GAGGAAAC GGGTGTTACAT CTGCAGAAATGGTGGC TGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACT GGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATC TGAGAGGCCGGAG TTTTG TGAA TGGACA TGGATGAC ACCTCAGCCAGTTA TTGAAAGGGCAGTTGAATTC AAAAACCAGTA  T ATGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSR10691A            [                                         CGTCGCACGCCTCCCCCCAATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCCTCCGCGCTCCGCCTCACCCGCCCGCTCTCCTCCTCCTGCTCCGCGTCGCCGNTCGCCGTCGTAGCCTCCATGGAGACGNCGNCGGAGAACTACCGNACCAACGTCGGCATCTGCCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATNGNCAACACATGGCAGATGNCTCAGGGTGGT ATTGATG CGGG AGAGGAT CCGAGGGAAGCTGCTTTCAGAGAATTGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK070891             [                                              CACGCCTCCCCCCAATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCCTCCGCGCTCCGCCTCACCCGCCCGCTCTCCTCCTCCTGCTCCGCGTCGCCGCTCGCCGTCGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCAACACATGGCAGATGCCTCAGGGTGGT ATTGATG CGGG AGAGGAT CCGAGGGAAGCTGCTTTCAGAGAATTGAGG GAGGAAAC GGGTGTTACAT CTGCAGAAATGGTGGC TGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACT GGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATC TGAGAGGCCGGAG TTTTG TGAA TGGACA TGGATGAC ACCTCAGCAAGTTA TTGAAAAGGCAGTTGAATTCAAAAAACCAGTA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTACCGTATTTCTACCTCCAACATCCTCTCAGTATGGAATTCTTAGAAAAGGACCAGAGAGTTTCTTTGACAACAAATATCAAGGCATGAAGGTTGCTGTGGCTTTTGTTGTGCGAGGACAAACTGCCCTTTATGCTTTGTACCGTGTCATGATATTGTCCCCTATAGAGAAAAGGAAATGTGGTTAGGAAGATGTATTGCTTGCTCCTCCACCTCCAGATGTGGCTCTGATTGTACAAGATTTGGAGTACCAGTAGCAGCATGAAGTGTGGGGATTCTTAAATGCCAATAAAGGTTGACCTCGAGCATTGGTGAGGAAAGCAAGTCGACTGAATTTACTAGTCCCTCATGAACTGCTTTATTTCATGTGTGTCTGCTTCTTTTCCCTCATGAACTTGCGCAGGCTTGATGCCTGCTAGTAGTAGTGTACTAGTACCTTACTAACTTCCACCCCTTTTCTTTCGTGAACCATTTAACTGCTGTGGTGTTTAGACAGAATAACTGAACTGAACACAAAAGTAGAGTATTGTACTACTTGTATTTACACCCTGAAGATGGATTATTTGGGTATC]
[+] EMBL AU029440             [                                                         CCAATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCCTCCGCGCTCCGCCTCACCCGCCCGCTCTCCTCCTCCTGCTCCGCGTCGCCGCTCGCCGTCGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCCTCGCCGACCCCTCCCTCACCAAGATTTTNACCGCGTCCAGGATCGACATCGCCAACACATGGCAGATGCCTCAGGGTGGT ATTGATG CGGG AGAGGAT CCGAGGGAAGCTGCTTTCAGAGAATTGAGG GAGGAAAC GGGTGTTACAT CTGCAGAAATGGTGGC TGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSC013               [                                                                                                                                                                                                                                                 nCCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCAACACATGGCAGATGCCTCAGGGTGGT ATTGATG CGGG AGAGGAT CCGAGGGAAGCTGCTTTCAGAGAATTGAGG GAGGAAAC GGGTGTTACAT CTGCAGAAATGGTGGC TGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACTGGGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATCTTAAGAGGCCGGAGTTTTTGTTGAATTGGACATTGGATGACAACCTCAGCAAGTTATTTNAAAAGGCAGTTGAATTCAAAAAACCAGTATTT TTAAGGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA764256             [                                                                                                                                                                                                                                                                                        ACATCGCCAACACATGGCAGATGCCTCAGGGTGGT ATTGATG CGGG AGAGGAT CCGAGGGAAGCTGCTTTCAGAGAATTGAGG GAGGAAAC GGGTGTTACAT CTGCAGAAATGGTGGC TGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACT GGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATC TGAGAGGCCGGAG TTTTG TGAA TGGACA TGGATGAC ACCTCAGCAAGTTA TTGAAAAGGCAGTTGAATTCAAAAAACCAGTA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATCAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATCATCTTGGTACTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU101348             [                                                                                                                                                                                                                                                                                                                  agGGGTGGTAATTGATGCCGGGNAGAGGATCCCGAGGGAAGCTGCTTTCAGAGAATTGAGGAGGGAAAACGGGGTG TACATNCTGCAGAAATGGTGGCTTGAGGTCCCCGTTTGGTTAACGTATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACT GGGAAGNAAGATGAGGTTAACCTTAATGGTGACGGATC TGAGAGGCCGGAG TTTTG TGAA TGGACA TGGATGAC ACCTCAGCAAGTTA TTGAAAAGGCAGTTGAATTCAAAAAACCAGTA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTACCGTATTTCTACCTCCAAaaaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL BU673488             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTA  TAATGAGGCAGCCCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCCNTGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATAC ATAATTATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB966327             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CB965805             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACTATAATTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CB966003             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL BU673262             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TA  T ATGAGGCAG CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU163053             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           G CCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTAaaaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU162403             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATTTCC TGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTAaaaaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL BU673796             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_15036#0
CNAACAACAGNCAGNGGAGCGGAGTTGATGGTGGTGGTGTCCGTCGCACGCCTCCCCCCA
ATCCTCGTGAGCCCTATCCGATTCCGCACCACCGCTACTCGCCGCCGTCTCCTCCCCTCC
TCCGCGCTCCGCCTCACCCGCCCGCTCTCCTCCTCCTGCTCCGCGTCGCCGCTCGCCGTC
GTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCCTCGCC
GACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCAACACATGGCAG
ATGCCTCAGGGTGGTATTGATGCGGGAGAGGATCCGAGGGAAGCTGCTTTCAGAGAATTG
AGGGAGGAAACGGGTGTTACATCTGCAGAAATGGTGGCTGAGGTCCCCGTTTGGTTAACG
TATGATTTCCCTGTTGATGTGAAAGAAAAGCTGAATGCTAGGTGGGGAGGAACGAACTGG
AAAGGACAGGCTCAGAAATGGTTTCTATTTAGATTTACTGGGAAGGAAGATGAGGTTAAC
CTTAATGGTGACGGATCTGAGAGGCCGGAGTTTTGTGAATGGACATGGATGACACCTCAG
CAAGTTATTGAAAAGGCAGTTGAATTCAAAAAACCAGTATATGAGGCAGCCCTGAAACAC
TTTGCCCCATATCTACAGTCAGATCCAGCAACTACAACTTCATCATAGCTGCAACGAATT
TCCTGAAGTTCTTTATATAGAGCGCTCTCATGTTGCCATAGATCCACAATAATTTATTAG
TATGAATTAACGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTATTATCC
CAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTAC
CGTATTTCTACCTCCAACATCCTCTCAGTATGGAATTCTTAGAAAAGGACCAGAGAGTTT
CTTTGACAACAAATATCAAGGCATGAAGGTTGCTGTGGCTTTTGTTGTGCGAGGACAAAC
TGCCCTTTATGCTTTGTACCGTGTCATGATATTGTCCCCTATAGAGAAAAGGAAATGTGG
TTAGGAAGATGTATTGCTTGCTCCTCCACCTCCAGATGTGGCTCTGATTGTACAAGATTT
GGAGTACCAGTAGCAGCATGAAGTGTGGGGATTCTTAAATGCCAATAAAGGTTGACCTCG
AGCATTGGTGAGGAAAGCAAGTCGACTGAATTTACTAGTCCCTCATGAACTGCTTTATTT
CATGTGTGTCTGCTTCTTTTCCCTCATGAACTTGCGCAGGCTTGATGCCTGCTAGTAGTA
GTGTACTAGTACCTTACTAACTTCCACCCCTTTTCTTTCGTGAACCATTTAACTGCTGTG
GTGTTTAGACAGAATAACTGAACTGAACACAAAAGTAGAGTATTGTACTACTTGTATTTA
CACCCTGAAGATGGATTATTTGGGTATC

consensusID : consensus_15036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 447
fasta sequence 
                              [GTGATGGNTGGTGGTGTCCGTCGCACGNCACNTCCCCCCAATNCCTCGTGAGCCCTATCCGATTCCGCACCAACCGCTAATACGCCGCCGTNCTNCCTACCCCTNCCTACCNGCGACTACCGCCTCAACCCGCCCGCTACTACCTACCTNCCTNGCTACCGCGTCGCCGCTACGCCGTACGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCCAACACATGGCAGATGCCTCAGGGTGGTATTGATGCGGGAGAGGATCCGAAGGGAAGCTGCCTTTCAGAGAATTGAGGGAGGAAACGGGTGTTACATCTGCAGAAATGGTGGCNTGAAGGTCCCCGTTTAGGTTAACGTATGATTTCCCTTGTTGATGTG]

[+] EMBL AU163052             [GTGATGGNTGGTGGTGTCCGTCGCACGNCACNTCCCCCCAATNCCTCGTGAGCCCTATCCGATTCCGCACCAACCGCTAATACGCCGCCGTNCTNCCTACCCCTNCCTACCNGCGACTACCGCCTCAACCCGCCCGCTACTACCTACCTNCCTNGCTACCGCGTCGCCGCTACGCCGTACGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCCAACACATGGCAGATGCCTCAGGGTGGTATTGATGCGGGAGAGGATCCGAAGGGAAGCTGCCTTTCAGAGAATTGAGGGAGGAAACGGGTGTTACATCTGCAGAAATGGTGGCNTGAAGGTCCCCGTTTAGGTTAACGTATGATTTCCCTTGTTGATGTG]




>consensus_15036#1
GTGATGGNTGGTGGTGTCCGTCGCACGNCACNTCCCCCCAATNCCTCGTGAGCCCTATCC
GATTCCGCACCAACCGCTAATACGCCGCCGTNCTNCCTACCCCTNCCTACCNGCGACTAC
CGCCTCAACCCGCCCGCTACTACCTACCTNCCTNGCTACCGCGTCGCCGCTACGCCGTAC
GTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCACCAACGTCGGCATCTGCTCGCCG
ACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGATCGACATCGCCCAACACATGGCAG
ATGCCTCAGGGTGGTATTGATGCGGGAGAGGATCCGAAGGGAAGCTGCCTTTCAGAGAAT
TGAGGGAGGAAACGGGTGTTACATCTGCAGAAATGGTGGCNTGAAGGTCCCCGTTTAGGT
TAACGTATGATTTCCCTTGTTGATGTG

consensusID : consensus_15036#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 267
fasta sequence 
                              [CAACTACAACTTCATCATAGCTGCAACGAATTTCCTGAAGTTCTTTATATNGNGCGCTCTCATGTTGCCNTAGATCCACAATAATTTATTAGTATGAATTANCGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTNTTNTCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTNCCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU029441             [CAACTACAACTTCATCATAGCTGCAACGAATTTCCTGAAGTTCTTTATATNGNGCGCTCTCATGTTGCCNTAGATCCACAATAATTTATTAGTATGAATTANCGGATGCTAGTATCTTTGAATACTTGGCATTATCCTGACAATTNTTNTCCCAACATTGGATCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTNCCGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_15036#2
CAACTACAACTTCATCATAGCTGCAACGAATTTCCTGAAGTTCTTTATATNGNGCGCTCT
CATGTTGCCNTAGATCCACAATAATTTATTAGTATGAATTANCGGATGCTAGTATCTTTG
AATACTTGGCATTATCCTGACAATTNTTNTCCCAACATTGGATCGAAGTGTGCAAACTGA
TACAATAATTATCTTGTTACTTTACTCCGTNCCGTAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15036#0      CNAACAACAGNCAGNGGAGCGGAGTTGATGGTGGTGGTGTCCGTCGCACGCC---TCCCC 57
consensus_15036#1      -----------------------GTGATGGNTGGTGGTGTCCGTCGCACGNCACNTCCCC 37
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      CCAATCC-TCGTGAGCCCTATCCGATTCCGCACCA-CCGCTACT-CGCCGCCGTCTCCTC 114
consensus_15036#1      CCAATNCCTCGTGAGCCCTATCCGATTCCGCACCAACCGCTAATACGCCGCCGTNCTNCC 97
consensus_15036#2      --------------------------------------------------------CAAC 4
                                                                                  *

consensus_15036#0      CCCTCCTCCGCGCTC--------CGCCTCA-CCCGCCCGCT-----CTCCTCCTCCTGCT 160
consensus_15036#1      TACCCCTNCCTACCNGCGACTACCGCCTCAACCCGCCCGCTACTACCTACCTNCCTNGCT 157
consensus_15036#2      TACAACTTCATCATAGC------TGCAACGAATTTCCTGAAGTTCTTTATATNGNGCGCT 58
                         *  ** *               **  *      ** *        *         ***

consensus_15036#0      -CCGCGTCGCCGCT-CGCCGT-CGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCA 217
consensus_15036#1      ACCGCGTCGCCGCTACGCCGTACGTAGCCTCCATGGAGACGCCGCCGGAGAACTACCGCA 217
consensus_15036#2      CTCATGTTGCCNTAGATCCAC-AATAATTTATTAGTATGAATTANCGGA---------TG 108
                         *  ** ***      **     **   *    * *        ****           

consensus_15036#0      CCAACGTCGGCATCTGCCTCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGA 277
consensus_15036#1      CCAACGTCGGCATCTGC-TCGCCGACCCCTCCCTCACCAAGATTTTCACCGCGTCCAGGA 276
consensus_15036#2      CTAGTATC----TTTGAATACTTGGCATTATCCTGACAATTNTTNTCCCAACATT--GGA 162
                       * *   **    * **  *    * *     *** ** *   ** ** *  * *   ***

consensus_15036#0      TCGACATCGCC-AAC--ACATGGCAGATGCCTCAGGGTGGTATTG-ATGCGGGAGAGGAT 333
consensus_15036#1      TCGACATCGCCCAAC--ACATGGCAGATGCCTCAGGGTGGTATTG-ATGCGGGAGAGGAT 333
consensus_15036#2      TCGAAGTGTGCAAACTGATACAATAATTATCTTGTTACTTTACTCCGTNCCGTAAAAAAA 222
                       ****  *   * ***  * *    *  *  **        ** *   * * * * *  * 

consensus_15036#0      CCGA-GGGAAGCTGC-TTTCAGAGAATTGAGGGAGGAAACGGGTGTTACATCTGCAGAAA 391
consensus_15036#1      CCGAAGGGAAGCTGCCTTTCAGAGAATTGAGGGAGGAAACGGGTGTTACATCTGCAGAAA 393
consensus_15036#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA--------------- 267
                          *    **          * * **   *   *  ***                     

consensus_15036#0      TGGTGGCT--GAGGTCCCCGTTT-GGTTAACGTATGATTTCCCT-GTTGATGTGAAAGAA 447
consensus_15036#1      TGGTGGCNTGAAGGTCCCCGTTTAGGTTAACGTATGATTTCCCTTGTTGATGTG------ 447
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      AAGCTGAATGCTAGGTGGGGAGGAACGAACTGGAAAGGACAGGCTCAGAAATGGTTTCTA 507
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      TTTAGATTTACTGGGAAGGAAGATGAGGTTAACCTTAATGGTGACGGATCTGAGAGGCCG 567
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GAGTTTTGTGAATGGACATGGATGACACCTCAGCAAGTTATTGAAAAGGCAGTTGAATTC 627
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      AAAAAACCAGTATATGAGGCAGCCCTGAAACACTTTGCCCCATATCTACAGTCAGATCCA 687
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GCAACTACAACTTCATCATAGCTGCAACGAATTTCCTGAAGTTCTTTATATAGAGCGCTC 747
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      TCATGTTGCCATAGATCCACAATAATTTATTAGTATGAATTAACGGATGCTAGTATCTTT 807
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GAATACTTGGCATTATCCTGACAATTATTATCCCAACATTGGATCGAAGTGTGCAAACTG 867
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      ATACAATAATTATCTTGTTACTTTACTCCGTACCGTATTTCTACCTCCAACATCCTCTCA 927
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GTATGGAATTCTTAGAAAAGGACCAGAGAGTTTCTTTGACAACAAATATCAAGGCATGAA 987
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GGTTGCTGTGGCTTTTGTTGTGCGAGGACAAACTGCCCTTTATGCTTTGTACCGTGTCAT 1047
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GATATTGTCCCCTATAGAGAAAAGGAAATGTGGTTAGGAAGATGTATTGCTTGCTCCTCC 1107
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      ACCTCCAGATGTGGCTCTGATTGTACAAGATTTGGAGTACCAGTAGCAGCATGAAGTGTG 1167
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GGGATTCTTAAATGCCAATAAAGGTTGACCTCGAGCATTGGTGAGGAAAGCAAGTCGACT 1227
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GAATTTACTAGTCCCTCATGAACTGCTTTATTTCATGTGTGTCTGCTTCTTTTCCCTCAT 1287
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      GAACTTGCGCAGGCTTGATGCCTGCTAGTAGTAGTGTACTAGTACCTTACTAACTTCCAC 1347
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      CCCTTTTCTTTCGTGAACCATTTAACTGCTGTGGTGTTTAGACAGAATAACTGAACTGAA 1407
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      CACAAAAGTAGAGTATTGTACTACTTGTATTTACACCCTGAAGATGGATTATTTGGGTAT 1467
consensus_15036#1      ------------------------------------------------------------
consensus_15036#2      ------------------------------------------------------------
                                                                                   

consensus_15036#0      C 1468
consensus_15036#1      -
consensus_15036#2      -


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)