These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1643 fasta sequence [GCCGTGCGGCCCGTGCCTCCTGCTATAGTGCTATCCAAACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAG--TTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG-CCAAGAAGCACGGCCTAACT-CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT-GAT-GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA-AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCATCAAAATATTGCTGCTCTGGAGACGTTTTTAATTATGATCAAAAA] [+] EMBL AK065587 [GCCGTGCGGCCCGTGCCTCCTGCTATAGTGCTATCCAAACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAG TTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGCTATATTGGTGTTTCCAATGAAACTTCATATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGTCACTTTGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCGATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAAAAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAAT ] [+] EMBL CF304352 [ TACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAA ] [+] EMBL CB633507 [ GCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAG TTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGC ] [+] EMBL CF310582 [ tgaaggAGTAGAAATCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGCTATATTGGTGTTTCCAATGAAACTTCATATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGTCACTTTGAAGTTAACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTC ] [-] EMBL CB633508 [ AGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTTTGTAAGTTTTATGATTAATGGCACCACAAATTTTTTT CCATTAAAgga ] [-] EMBL CB622781 [ TGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTAGGATTAATGGCACCACAAAT ] [-] EMBL CB621400 [ AAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAA TTTTTTTCCCATCAGTATTTTGCTGCTCTGGAGACGTTTTTAATTATGATC ] [-] EMBL CF310583 [ CGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAAAAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCAAGAAAAaa ] [+] EMBL AU058116 [ CTAAAGAAGCAACGAATGAATATGTCAAGCTTGCCCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCNTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAAAAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCA AAAAna ] [+] EMBL BQ907146 [ G CCAAGAAGCACGGCCTAACTGCCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTTGGATGGACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGATAAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAA TTTTTTTCCCATCAGTATTTTGCTGCTCTGGAGACGTTTTTAATTATGATCAAAAA] [+] EMBL OSAA31867 [ anACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACT ] [-] EMBL OSAA31770 [ TTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCAC ] consensusID : consensus_15038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 862 fasta sequence [CGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCAATGAAACTTCGTATGGAGTGATGGAGTTTG] [+] EMBL BF430782 [CGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAAGTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACACTGCGAAAGTAGCTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTC AAAAGAGTCTTTCCCGCTTATCTACAGACTCCATTGATTTACTCCAGATACACTGGCCA ] [+] EMBL CB622780 [ GCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCAATGAAACTTCGTATGGAGTGATGGAGTTTG] [+] EMBL CB621399 [ ATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCT ATTGATGAAGGAAAGG TCGTTATATTGGTGTTT ] consensusID : consensus_15038#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence [AACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGGTTAATTAGTACATTCCTTCTGTTTTCTTTTCTCCTGATTTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTCGCCTTTAGTATCCAGTGCCACCCAGAAAAGAGACCTCAA-GAAGAACTGATCTAT] [+] EMBL CB639650 [AACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGGTTAATTAGTACATTCCTTCTGTTTTCTTTTCTCCTGATTTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTCGCCTTTAGTATCCAGTGCCACCCAGAAAAGAGACCTCAA GAAGAACTGATCTAT] [+] EMBL CB636746 [AACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCACACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGGTTAATTAGTACATTCCTTCTGTTTTCTTTTCTCCTGATTTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTCGCCTTTAGTATCCAGTGCCACCCAGAAAAGAGA CTCAAGGAAGAACTG ] [+] EMBL OSS3577A [ TACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTT ] consensusID : consensus_15038#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [CGAGCCTAGCAAAAGCAAAAATGATTTATACCAGTGTACTGGATTTATTCACATAGTGGACATTCACCAAATTTTGTTTTTTGAGCAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGA] [+] EMBL AA752397 [CGAGCCTAGCAAAAGCAAAAATGATTTATACCAGTGTACTGGATTTATTCACATAGTGGACATTCACCAAATTTTGTTTTTTGAGCAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15038#1 ------------------------------------------------CGCCGGAGCCAC 12 consensus_15038#2 -------------------------------------AACTGCGGTCCCGCCGGAGCCAC 23 consensus_15038#0 GCCGTGCGGCCCGTGCCTCCTGCTATAGTGCTATCCAAACTGCGGTCCCGCCGGAGCCAC 60 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 GGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGT 72 consensus_15038#2 GGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGT 83 consensus_15038#0 GGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGT 120 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 AGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTG 132 consensus_15038#2 AGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAG----- 138 consensus_15038#0 AGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAG----- 175 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 TGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTC 192 consensus_15038#2 -----GGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTC 193 consensus_15038#0 -----GGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTC 230 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAG 252 consensus_15038#2 ATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAG 253 consensus_15038#0 ATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAG 290 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGG 312 consensus_15038#2 ACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGG 313 consensus_15038#0 ACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGG 350 consensus_15038#3 -------------------------CGAGCCTAGCAAAAGCAAAAATGATTTATACCAGT 35 * ** ** ** * * * * * consensus_15038#1 AGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAA 372 consensus_15038#2 AGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAA 373 consensus_15038#0 AGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAA 410 consensus_15038#3 GTACT--GGATTTATTCACATAGTGGACATTCACCAAATTTTGTTTTTTGAGCAGTTGAC 93 * * * ** * ** * ** ** ** ** ** **** ** * consensus_15038#1 CACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCT 432 consensus_15038#2 CACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCT 433 consensus_15038#0 CACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCT 470 consensus_15038#3 CTTGTTG----AAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCC--TACTCT 147 * * * *** * * * * * * * * * ** * ** ** consensus_15038#1 TGACACAGCAGAAATG--TATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGAT 490 consensus_15038#2 TGACACAGCAGAAATGGTTAATTAGTACATTCCTT-----CTGTTTTCTTTTCTCCTGAT 488 consensus_15038#0 TGACACAGCAGAAATG--TATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGAT 528 consensus_15038#3 CCATTGGCTGGAGGTG--TTCTCACTGGGA------------------------------ 175 * ** ** * * * consensus_15038#1 CTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAA 550 consensus_15038#2 TTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTC----G 544 consensus_15038#0 CTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAA 588 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 GTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTT 610 consensus_15038#2 CCTTTAG--TATCCAGTGCCACCCAGAA------AAGAGACCTCAAGAAGAACTGATCTA 596 consensus_15038#0 GTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTT 648 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 GATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTAC 670 consensus_15038#2 T----------------------------------------------------------- 597 consensus_15038#0 GATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTAC 708 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGT 730 consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 ATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGT 768 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 TACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAA 790 consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 TACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAA 828 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 GAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTC-AATGAAACTTCGTATGGA 849 consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 GAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGA 888 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 GTGATGGAGTTTG----------------------------------------------- 862 consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 GTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAG 948 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 AACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCAC 1008 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 CCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACT 1068 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 GGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCT 1128 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 GGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAG 1188 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 CTTGCCAAGAAGCACGGCCTAACTCCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGT 1248 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 CCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATT 1308 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 GATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTTGATGACATCGAATCC 1368 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 CTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGAAAACAGAACGC 1428 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 TTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCC 1488 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 AGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTT 1548 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ------------------------------------------------------------ consensus_15038#2 ------------------------------------------------------------ consensus_15038#0 GTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCATCAAAATATT 1608 consensus_15038#3 ------------------------------------------------------------ consensus_15038#1 ----------------------------------- consensus_15038#2 ----------------------------------- consensus_15038#0 GCTGCTCTGGAGACGTTTTTAATTATGATCAAAAA 1643 consensus_15038#3 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||