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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1643 fasta sequence
[GCCGTGCGGCCCGTGCCTCCTGCTATAGTGCTATCCAAACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAG--TTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG-CCAAGAAGCACGGCCTAACT-CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT-GAT-GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA-AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCATCAAAATATTGCTGCTCTGGAGACGTTTTTAATTATGATCAAAAA]
[+] EMBL AK065587 [GCCGTGCGGCCCGTGCCTCCTGCTATAGTGCTATCCAAACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAG TTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGCTATATTGGTGTTTCCAATGAAACTTCATATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGTCACTTTGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCGATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAAAAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAAT ]
[+] EMBL CF304352 [ TACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAA ]
[+] EMBL CB633507 [ GCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAG TTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGC ]
[+] EMBL CF310582 [ tgaaggAGTAGAAATCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGCTATATTGGTGTTTCCAATGAAACTTCATATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGTCACTTTGAAGTTAACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTC ]
[-] EMBL CB633508 [ AGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTTTGTAAGTTTTATGATTAATGGCACCACAAATTTTTTT CCATTAAAgga ]
[-] EMBL CB622781 [ TGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTAGGATTAATGGCACCACAAAT ]
[-] EMBL CB621400 [ AAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGAGTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAGAACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCTGGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAA TTTTTTTCCCATCAGTATTTTGCTGCTCTGGAGACGTTTTTAATTATGATC ]
[-] EMBL CF310583 [ CGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAGCTTG CCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAAAAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCAAGAAAAaa ]
[+] EMBL AU058116 [ CTAAAGAAGCAACGAATGAATATGTCAAGCTTGCCCAAGAAGCACGGCCTAACT CCAGTCCAGCTTGCACTGGGCTTTGTGCNTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGA AAAAAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCA AAAAna ]
[+] EMBL BQ907146 [ G CCAAGAAGCACGGCCTAACTGCCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTTGGATGGACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGATAAACAGAACGCTTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCACCACAAA TTTTTTTCCCATCAGTATTTTGCTGCTCTGGAGACGTTTTTAATTATGATCAAAAA]
[+] EMBL OSAA31867 [ anACT CCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGTCCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATTGATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTT GAT GACATCGAATCCCTCTTCAAGAGATACCGAGACCCAACACT ]
[-] EMBL OSAA31770 [ TTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCCAGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTTGTCTATTCTGTTGATTTTATGATTAATGGCAC ]
consensusID : consensus_15038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 862 fasta sequence
[CGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCAATGAAACTTCGTATGGAGTGATGGAGTTTG]
[+] EMBL BF430782 [CGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAAGTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACACTGCGAAAGTAGCTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTC AAAAGAGTCTTTCCCGCTTATCTACAGACTCCATTGATTTACTCCAGATACACTGGCCA ]
[+] EMBL CB622780 [ GCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCAATGAAACTTCGTATGGAGTGATGGAGTTTG]
[+] EMBL CB621399 [ ATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTGTGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGTATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGATCTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAAGTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTTGATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTACATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGTTACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAAGAGCT ATTGATGAAGGAAAGG TCGTTATATTGGTGTTT ]
consensusID : consensus_15038#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 597 fasta sequence
[AACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGGTTAATTAGTACATTCCTTCTGTTTTCTTTTCTCCTGATTTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTCGCCTTTAGTATCCAGTGCCACCCAGAAAAGAGACCTCAA-GAAGAACTGATCTAT]
[+] EMBL CB639650 [AACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGGTTAATTAGTACATTCCTTCTGTTTTCTTTTCTCCTGATTTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTCGCCTTTAGTATCCAGTGCCACCCAGAAAAGAGACCTCAA GAAGAACTGATCTAT]
[+] EMBL CB636746 [AACTGCGGTCCCGCCGGAGCCACGGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCACACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCTTGACACAGCAGAAATGGTTAATTAGTACATTCCTTCTGTTTTCTTTTCTCCTGATTTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTCGCCTTTAGTATCCAGTGCCACCCAGAAAAGAGA CTCAAGGAAGAACTG ]
[+] EMBL OSS3577A [ TACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGTAGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTCATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAGACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGGAGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAACACGGAGAAGGAAGCGCACGATATTCTTTCTT ]
consensusID : consensus_15038#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence
[CGAGCCTAGCAAAAGCAAAAATGATTTATACCAGTGTACTGGATTTATTCACATAGTGGACATTCACCAAATTTTGTTTTTTGAGCAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGA]
[+] EMBL AA752397 [CGAGCCTAGCAAAAGCAAAAATGATTTATACCAGTGTACTGGATTTATTCACATAGTGGACATTCACCAAATTTTGTTTTTTGAGCAGTTGACCTTGTTGAAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACTGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15038#1 ------------------------------------------------CGCCGGAGCCAC 12
consensus_15038#2 -------------------------------------AACTGCGGTCCCGCCGGAGCCAC 23
consensus_15038#0 GCCGTGCGGCCCGTGCCTCCTGCTATAGTGCTATCCAAACTGCGGTCCCGCCGGAGCCAC 60
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 GGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGT 72
consensus_15038#2 GGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGT 83
consensus_15038#0 GGGCCACGGCTACCCCTCGACCGCATCGCCTCCTCTCCTCGCGCCCTCCGCCGCCGCCGT 120
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 AGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAGATTTG 132
consensus_15038#2 AGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAG----- 138
consensus_15038#0 AGCCTTCTCCCCTCCCCTGTGCGGAATCCTCCACGCGCGCACGGCCGGCGACCAG----- 175
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 TGCTGGGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTC 192
consensus_15038#2 -----GGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTC 193
consensus_15038#0 -----GGAACTTCAGCATGCAACAAATGGCCGTATCTGCATTCACTGCAAACCCATCCTC 230
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAG 252
consensus_15038#2 ATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAG 253
consensus_15038#0 ATCACATGGCAATACCTTATCGGGGTTGTGCTCCCGTCGGCCTGAGATATGGCACAGGAG 290
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGG 312
consensus_15038#2 ACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGG 313
consensus_15038#0 ACGCATCGGCAGCAGAATTCGGGCGCAGGCGCAGTCGCAGATGCAGTATCGGAAGCTGGG 350
consensus_15038#3 -------------------------CGAGCCTAGCAAAAGCAAAAATGATTTATACCAGT 35
* ** ** ** * * * * *
consensus_15038#1 AGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAA 372
consensus_15038#2 AGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAA 373
consensus_15038#0 AGATTCAGACCTTGTCATCAGTGAGGTCACTCTTGGAACAATGACATTTGGAGAGCAAAA 410
consensus_15038#3 GTACT--GGATTTATTCACATAGTGGACATTCACCAAATTTTGTTTTTTGAGCAGTTGAC 93
* * * ** * ** * ** ** ** ** ** **** ** *
consensus_15038#1 CACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCT 432
consensus_15038#2 CACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCT 433
consensus_15038#0 CACGGAGAAGGAAGCGCACGATATTCTTTCTTATTCTTTCGATCAAGGTGTCAATATCCT 470
consensus_15038#3 CTTGTTG----AAGTGTGCCACCCAAATAACTGTAATGTTGGGTTGCTTGCC--TACTCT 147
* * * *** * * * * * * * * * ** * ** **
consensus_15038#1 TGACACAGCAGAAATG--TATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGAT 490
consensus_15038#2 TGACACAGCAGAAATGGTTAATTAGTACATTCCTT-----CTGTTTTCTTTTCTCCTGAT 488
consensus_15038#0 TGACACAGCAGAAATG--TATCCAGTGCCACCCAGAAAAGAGACTCAAGGAAGAACTGAT 528
consensus_15038#3 CCATTGGCTGGAGGTG--TTCTCACTGGGA------------------------------ 175
* ** ** * * *
consensus_15038#1 CTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAA 550
consensus_15038#2 TTACGGAGCGGCAATTGCTTTAGTTTTTCATTTTGTAACAGCCTTTCTCCATTTC----G 544
consensus_15038#0 CTATATATAGGCAGTTGGATGCAATCAAAGCCACGAGATAAGATTATTCTAGCCACAAAA 588
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 GTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTT 610
consensus_15038#2 CCTTTAG--TATCCAGTGCCACCCAGAA------AAGAGACCTCAAGAAGAACTGATCTA 596
consensus_15038#0 GTTTCAGGTTACTCAGAGCGATCTACTTTTCTCCGGGACAATGCGAAAGTAGTTCGTGTT 648
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 GATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTAC 670
consensus_15038#2 T----------------------------------------------------------- 597
consensus_15038#0 GATGCTGCCAATATCAAGGAAAGTGTCGAAAAGAGTCTTTCCCGCTTATCTACAGACTAC 708
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGT 730
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 ATTGATTTACTCCAGATACACTGGCCAGATAGGTATGTTCCACTATTTGGTGAATACTGT 768
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 TACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAA 790
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 TACAACCCAACCAAATGGAGGCCAAGTGTTCCATTTGAGGAACAGTTGAAAGCTTTCCAA 828
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 GAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTC-AATGAAACTTCGTATGGA 849
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 GAGCTAATTGATGAAGGAAAGGTTCGTTATATTGGTGTTTCCAATGAAACTTCGTATGGA 888
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 GTGATGGAGTTTG----------------------------------------------- 862
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 GTGATGGAGTTTGTACATGCTGCAAAGGTTCAAGGACTTCCAAAGATTGTGAGCATCCAG 948
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 AACAGTTATAGTCTAATTGTGAGATGCCACTTCGAAGTTGACCTTGTTGAAGTGTGCCAC 1008
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 CCAAATAACTGTAATGTTGGGTTGCTTGCCTACTCTCCATTGGCTGGAGGTGTTCTCACT 1068
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 GGGAAGTATATTGATACTAACCCTGACATATCAAAGAAGAGCAGGCTAAATCTCTTCCCT 1128
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 GGATACATGGAGCGCTACAATGCATCGTTGGCTAAAGAAGCAACGAATGAATATGTCAAG 1188
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 CTTGCCAAGAAGCACGGCCTAACTCCAGTCCAGCTTGCACTGGGCTTTGTGCGTGACCGT 1248
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 CCATTCACAGCTAGCACAATCATCGGAGCAACGACCATGGATCAGTTGAAGGAGAACATT 1308
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 GATGCATTTACCAGTGCTCCACGGCCTTTGGCACCGGAAGTTCTTGATGACATCGAATCC 1368
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 CTCTTCAAGAGATACCGAGACCCAACACTTTCGTAGGTGAGGATAAAGAAAACAGAACGC 1428
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 TTTCGTAGGTGTTTATTCATCTTTTTTTCCTATGAATGTGCCTTCCACAGACAGGAGCCC 1488
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 AGAAACTAGTTGTGCTTTTGTGGTTTCACCGTATCATCCATGCCAACAAGACATGGATTT 1548
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 ------------------------------------------------------------
consensus_15038#2 ------------------------------------------------------------
consensus_15038#0 GTCTATTCTGTTGATTTTATGATTAATGGCACCACAAATTTTTTTTCCCATCAAAATATT 1608
consensus_15038#3 ------------------------------------------------------------
consensus_15038#1 -----------------------------------
consensus_15038#2 -----------------------------------
consensus_15038#0 GCTGCTCTGGAGACGTTTTTAATTATGATCAAAAA 1643
consensus_15038#3 -----------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||