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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1258 fasta sequence
[CGCGCCGCGCCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTCCTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCGTGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC-GCGC-TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT-CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG-AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT-GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT-GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAAAAAAAAAAA]
[+] EMBL CB652556 [CGCGCCGCGCCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTCCTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCGTGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAAT ]
[+] EMBL AK070121 [ CCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTCCTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCGTGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCGAGTATGCACATTTGAATGAGCAACTTGGGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAGGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTT ]
[+] EMBL AB003322 [ CCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTT ]
[+] EMBL C26796 [ CCCTGGCCGGTGGGGGAGGATCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGC NGNCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTN G GCTTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTAT ]
[+] EMBL CF322477 [ GTCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGGNAAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACC ]
[+] EMBL C74765 [ ATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGC NGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTCNGC N TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAA CTAGTCTCCGGCTTA ]
[+] EMBL CF325684 [ GATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC GCGC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTACACAAATGACAGGTGAGGAGCTTGAGGGATTGAGC ]
[+] EMBL OSS13245A [ CGGCGGCGGGNCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTC NGNC TCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGTAAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTNAGGGATTNAGCATTGATGAACTCCCAGCAG ]
[+] EMBL AU174747 [ TCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAAT ]
[+] EMBL AU077565 [ AAGTACAACACACATTCTAATAATCTGGGGAAAGCAGAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAACTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGCATTGATGAACT CCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTGACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGG AAGAGTTCACAGCTGGCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGAT ]
[+] EMBL AU030918 [ TGATACTGAAAATTTTGTTACCGAA GACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTNGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCG TTNATTATCCCATCGCAATNGGCACTCC TATGGNGAAAC TCCTANATGGACTTGGTgnc ]
[+] EMBL AU174746 [ TGTTACCGAAGGACAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAGTAAAAAAAA]
[+] EMBL AU032867 [ TGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAA ]
[+] EMBL AU094941 [ CTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAAA ]
[+] EMBL AU165620 [ CGGATGTATCCCTGAAATNAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTTTTATTCCCAAACCCAGACT GCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTAAAAA ]
[+] EMBL AU093708 [ GTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTAT GCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGCGTTCTA ]
consensusID : consensus_15053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 620 fasta sequence
[TCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGGTATGCTGTTCTACTCCCACGCCTGGATATCTCTCGACTCCGCTTCGTCTCCCGCGTTTCGATAGATCTAGCTAGGCGCGTTTCCTCCCCCGGTCTCCCTTTGACTTCGATGTCTAAGATCCATCCGCCTGGGCTAGGGTTTAACACGGGATATTTTAACTAGTAACACGGATCTCACCATTTCCACCCGTTCAGAAAAATCAATACAGTTTTAGAACGACTCGTGGTTACTTTCGCCCCCTTTAGATGTAGGGGATTTACTGTAGTGTATGTAGTCTGCACCTGTACTTTTGCAGATTATTTTCGAGGTGTTCTTTTTTTGGTGCATGAGTAGCCCATCTTATTTGGCCATTCCTACTGGAAATATCGTACGACAACTCCTGTTATTTGCTGTTTATGTGCGCGTGGAGTTAATCGA]
[+] EMBL CF306783 [TCGATCCGCGCGCGGCGGCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTCACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGCGACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGCTCCAGGTATGCTGTTCTACTCCCACGCCTGGATATCTCTCGACTCCGCTTCGTCTCCCGCGTTTCGATAGATCTAGCTAGGCGCGTTTCCTCCCCCGGTCTCCCTTTGACTTCGATGTCTAAGATCCATCCGCCTGGGCTAGGGTTTAACACGGGATATTTTAACTAGTAACACGGATCTCACCATTTCCACCCGTTCAGAAAAATCAATACAGTTTTAGAACGACTCGTGGTTACTTTCGCCCCCTTTAGATGTAGGGGATTTACTGTAGTGTATGTAGTCTGCACCTGTACTTTTGCAGATTATTTTCGAGGTGTTCTTTTTTTGGTGCATGAGTAGCCCATCTTATTTGGCCATTCCTACTGGAAATATCGTACGACAACTCCTGTTATTTGCTGTTTATGTGCGCGTGGAGTTAATCGA]
consensusID : consensus_15053#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[CTCACTTTGGGCCGAATTGGGTCCCGGGCCCCCCCTCGAGNTCGACCCCACGCNTCCGGCAATTTGTTTGATACTGAAAATTTTTGTTCCCNAAGGACAGTCCTCTGAATCTGTGATGACTCCATTGCATTCTGGAAGTTCACAGTCNCAGGATAATGATGATGGCTCGGATGTACCCCCTGAAATTAGGGCTNCCTTGTGGTNCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGNCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTANCCTGATTTATCACCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACNCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGNGTTNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030919 [CTCACTTTGGGCCGAATTGGGTCCCGGGCCCCCCCTCGAGNTCGACCCCACGCNTCCGGCAATTTGTTTGATACTGAAAATTTTTGTTCCCNAAGGACAGTCCTCTGAATCTGTGATGACTCCATTGCATTCTGGAAGTTCACAGTCNCAGGATAATGATGATGGCTCGGATGTACCCCCTGAAATTAGGGCTNCCTTGTGGTNCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGNCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTANCCTGATTTATCACCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACNCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAGNGTTNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15053#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 519 fasta sequence
[GCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGNCAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU077566 [GCAGAGGAGAACATGCAACTCAGAAACCAGGTATCCCAGATATCACCAGCTGAGAAGCAAGTTGTTGATACTGAAAATTTTGTTACCGAAGGNCAGTCCTCTGAATCTGTGATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGTATCCCTGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAAGCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTTATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGAAGCGAGATCAGTTAACCTGATTTATCATCCTTGTGGCTGCATGATGCGATGTTCCGCTTGTACTGTTCGCTAGGATCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCCCATCGCTATTGGCACTCCTTATGCGATACATCATATATGCACTTTGTTGCTATCTTAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 CGCGCCGCGCCTCGCCTCGCCTCGCCTCACCTCACCTCACCTCACCCTCCGCCTCGTCTC 60
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 CTTCCCCCCTTTCCTCTACCCACGCACGCCCTCTCTCCCATCCCAGCCGTAGCCGCGCCG 120
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 TGACTTGTCTCGATCGGCGGCGAGGAGGAGGGCTTCCGTTCCCTGGCCGGTGGGGGAGGA 180
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 TCAGGCGGGGGGGCGGCGGGGAGGGGGAGGAGATCGGTCTCGGTCGATCCGCGCGCGGCG 240
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 GCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTC 300
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 ACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGC 360
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 GACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGC 420
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 TCCAGTATGAATGAAATCATCGACAAGTACAACACACATTCTAATAATCTGGGGAAAGCA 480
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 GAACAGCCTTCGCTCGACTTGAATTTAGAACATAGCAAGTATGCACATTTGAATGAGCAA 540
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 CTTGCGGAAGCTAGTCTCCGGCTTAGACAAATGAGAGGTGAGGAGCTTGAGGGATTGAGC 600
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ------------------------------------------------------------
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 ATTGATGAACTCCAGCAGCTAGAGAAGAACCTGGAAGCTGGTCTGCACAGGGTGATGCTG 660
consensus_15053#1 ------------------------------------------------------------
consensus_15053#2 ---------------------------------------------------------CTC 3
consensus_15053#3 ------------------------------------------------------------
consensus_15053#0 ACAAAGGATCAACAATTTATGGAGCAGATCAGTGAACTCCAGCGGAAGAGTTCACAGCTG 720
consensus_15053#1 -------------------------------------------TCGATCCGCGCGCGGCG 17
consensus_15053#2 ACTTTGGGCCGAATTGGGTCCCGGGCCCCC-CC-TCGAGNTCGACCCCACGCNTCCGGCA 61
consensus_15053#3 GCAGAGGAGAACATGCAACTCAGAAACCAG-GTATCCCAGATATCACCAGCTGAGAAGCA 59
consensus_15053#0 GCAGAGGAGAACATGCAACTCAGAAACCAG-GTATCCCAGATATCACCAGCTGAGAAGCA 779
consensus_15053#1 GCGATGGCGCGGGAGAGGCGGGAGATAAAGAGGATAGAGAGCGCGGCGGCGCGGCAGGTC 77
* ** * * *
consensus_15053#2 ATTTGTTT--GATACTGAAAATTTTTGTTCCCNAAGGAC----AGTCCTCTGAA-TCTGT 114
consensus_15053#3 AGTTGTT---GATACTGAAAATTTT-GTTACCGAAGGNC----AGTCCTCTGAA-TCTGT 110
consensus_15053#0 AGTTGTT---GATACTGAAAATTTT-GTTACCGAAGGAC----AGTCCTCTGAA-TCTGT 830
consensus_15053#1 ACCTTCTCCAAGCGCCGGCGCGGCCTGTTCAAGAAGGCCGAGGAGCTCTCCGTGCTCTGC 137
* * * * * *** **** * ** *** * ****
consensus_15053#2 GATGACTCCATTGCATTCTGGAAGTTCACAGTCNCAGGATAATGATGATGGCTCGGATGT 174
consensus_15053#3 GATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGT 170
consensus_15053#0 GATGACTGCATTGCATTCTGGAAGTTCACAGTCGCAGGATAATGATGATGGCTCGGATGT 890
consensus_15053#1 GACGCCGACGTCGCGCTCATCGTCTTCTCCTCCACGGGGAAGCTATCCCACTTCGCAAGC 197
** * * * * ** ** *** * * * ** * ** *** * *
consensus_15053#2 ACCCCCTGAAATTAGGGCTNCCTTGTGGTNCATGGAAGTAACTGAAAGGAAAAAAAAA-- 232
consensus_15053#3 ATCCC-TGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAA-- 227
consensus_15053#0 ATCCC-TGAAATTAGGGCTGCCTTGTGGTGCATGGAAGTAACTGAAAGGAAAAAAAAA-- 947
consensus_15053#1 TCC----AGGTATGCTGTTCTACTCCCACGCCTGGATATCTCTCGACTCCGCTTCGTCTC 253
* * * * * * **** * ** *
consensus_15053#2 --GCATCCTTGCAGATCTGGTTGGAGNCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTT 290
consensus_15053#3 --GCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTT 285
consensus_15053#0 --GCATCCTTGCAGATCTGGTTGGAGTCGTTGCGGCATCCAGGGGAGAAACGCTTGTGTT 1005
consensus_15053#1 CCGCGTTTCGATAGATCTAGCTAGGCGCGTTTCCTCCCCCGGTCTCCCTTTGACTTCGAT 313
** * ****** * * * **** * * ** * * * * *
consensus_15053#2 ATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGA-AGCGAGATCAGTTANCCT 349
consensus_15053#3 ATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGA-AGCGAGATCAGTTAACCT 344
consensus_15053#0 ATTCCCAAACCCAGACTGCAATAATATAATCTTGCGTTGGA-AGCGAGATCAGTTAACCT 1064
consensus_15053#1 GT-CTAAGATCCATCCGCCTGGGCTAGGGTTTAACACGGGATATTTTAACTAGTAACACG 372
* * * * *** * * ** * * * *** * * *** * *
consensus_15053#2 GATTT-ATCACCCTTGTGGCTGCATGATG--CGATGTTCCGCTTGTACTGTTCGCTAGGA 406
consensus_15053#3 GATTT-ATCATCCTTGTGGCTGCATGATG--CGATGTTCCGCTTGTACTGTTCGCTAGGA 401
consensus_15053#0 GATTT-ATCATCCTTGTGGCTGCATGATG--CGATGTTCCGCTTGTACTGTTCGCTAGGA 1121
consensus_15053#1 GATCTCACCATTTCCACCCGTTCAGAAAAATCAATACAGTTTTAGAACGACTCGTGGTTA 432
*** * * ** * ** * * ** * * ** *** *
consensus_15053#2 TCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCC-CATCGCTATTGGCACNCC 465
consensus_15053#3 TCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCC-CATCGCTATTGGCACTCC 460
consensus_15053#0 TCTTGACTAAACTTTGAGATCTATGTGCCGTTTAATTATCC-CATCGCTATTGGCACTCC 1180
consensus_15053#1 CTTTCGCCC--CCTTTAGATGTAGGGGATTTACTGTAGTGTATGTAGTCTGCACCTGTAC 490
** * * ** **** ** * * * * * * * * *
consensus_15053#2 TTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAG 525
consensus_15053#3 TTATGCGATACATCATATATGCACTTTGTTGCTATCTTAA-------------------- 500
consensus_15053#0 TTATGCGATACATCATATATGCACTTTGTTGCTATCTTAATTATGATGCGTCTTTTGCAG 1240
consensus_15053#1 TTTTGCAGATTATTTTCGAGGTGTTCTTTTTTTGGTGCATGAGTAGCCCATCTTATTTGG 550
** *** ** * * * * * ** * *
consensus_15053#2 NGTTNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----- 580
consensus_15053#3 -------AAAAAAAAAAAAAAAAAAA---------------------------------- 519
consensus_15053#0 CGTTCTAAAAAAAAAAAA------------------------------------------ 1258
consensus_15053#1 CCATTCCTACTGGAAATATCGTACGACAACTCCTGTTATTTGCTGTTTATGTGCGCGTGG 610
* *** *
consensus_15053#2 ----------
consensus_15053#3 ----------
consensus_15053#0 ----------
consensus_15053#1 AGTTAATCGA 620
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||