These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 2025 fasta sequence [TAAATTAACTACATAGAGGATGTAAAGGTGTAACATGGCTTAATTTAGAGCGCACCACTGATCCTACAAATAGCATGCAAAACTACAGCCGCTCAACACAAACACCTGGCCTATTTTTAGGCATCCTCTTCCATCTCCAGAGAAGTGAGCCCCAGCCTCATGTCACAAGGGAAGCACTAGCCACCATAGAAC--TCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGATCCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGA-TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCATGGCCAGCAAGAGCAAGATATACTTTGCAATGGAGTATGTCC-GGGGTGGTGAGCTCTTCAGCAGGGTAGCCAGGGGGCGACTCAAGGAGGATGCT-GCGAGGAAGTACTTCCAGCAGTTGATAGGGGCTGTGGACTTCTGTCACAGCCGCGGTGTCTACCACCGAGACCTCAAGCCAGAGAACCTCCTCGTCGACGAGAATGGCAACCTCAAAGTGTCGGACTTTGGGCTGAGCGCCTTCAAGGAGTGTCAGAAGCAGGACGGGCTGCTCCACACGACGTGTGGCACACCTGCATATGTTGCACCAGAGATAATCAATAAGAGGGGCTATGATGGAGCAAAAGCAGACATATGGTCTTGCGGTGTCATACTCTTTGTTCTGCTTGCTGGCTACCTCCCATTCCATGACTCAAATCTAATGGAGATGTACCGGAAGATAAGCAAAGGTGATGTCAAGTTCCCACAGTGGTTCACTACTGATGTCCGAAGGCTTCTGTCCAGGCTGCTTGATCCAAATCCAAACATTAGGATCACCGTTGAGAAGCTAGTTGAGCATCCATGGTTCAAGAAGGGGTACAAACCAGCAGTGATGCTATCACAGCCAAATGAATCAAACAACCTCAAGGATGTCCATACTGCTTTCAGTGCTGATCACAAGGACAATGAAGGCAAGGCAAAAGAACCAGCAAGCTCTTTGAAGCCAGTGAGCTTGAATGCATTTGACATCATCTCCCTCTCCAAAGGATTTGATCTGTCAGGCCTGTTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAAATTCTGCAACAAGGGCCTAAGACCTTCTCT-CAGGGACATCTGCTGGGATGGTCAGTCAGAGCAT-CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAACAGGGAGATTGACAAAAAAAAAAAA] [+] EMBL CB623025 [TAAATTAACTACATAGAGGATGTAAAGGTGTAACATGGCTTAATTTAGAGCGCACCACTGATCCTACAAATAGCATGCAAAACTACAGCCGCTCAACACAAACACCTGGCCTATTTTTAGGCATCCTCTTCCATCTCCAGAGAAGTGAGCCCCAGCCTCATGTCACAAGGGAAGCACTAGCCACCATAGAACTATCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGATCCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGTGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGCGTCGGCATGATTGACCAGA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCATGGCCAGCAAGAGCAAGATATACTTTGCAATGGAGTATGTCC GGGGTGGTGAGCTCTTCAGCAGGGTAGCCAGGGGGCGACTCAAGGAGGATGCT GCGAGGAAGTACTTCCAGCAGTTGATAGGGGCTGTGGACTTCT ] [+] EMBL CF293959 [ CACCTGGCCTATTTTTAGGCATCCTCTTCCATCTCCAGAGAAGTGAGCCCCAGCCTCATGTCACAAGGGAAGCACTAGCCACCATAGAAC TCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGATCCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCG ] [+] EMBL CF294562 [ CACCTGGCCTATTTTTAGGCATCCTCTTCCATCTCCAGAGAAGTGAGCCCCAGCCTCATGTCACAAGGGAAGCACTAGCCACCATAGAAC TCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGATCCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCANAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCANA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACA ] [+] EMBL AK065589 [ CTGGCCTATTTTTAGGCATCCTCTTCCATCTCCAGAGAAGTGAGCCCCAGCCTCATGTCACAAGGGAAGCACTAGCCACCATAGAAC TCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGGTCCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCCCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCATGGCCAGCAAGAGCAAGATATACTTTGCAATGGAGTATGTCC GGGGTGGTGAGCTCTTCAGCAGGGTAGCCAGGGGGCGACTCAAGGAGGATGCT GCGAGGAAGTACTTCCAGCAGTTGATAGGGGCTGTGGACTTCTGTCACAGCCGCGGTGTCTACCACCGAGACCTCAAGCCAGAGAACCTCCTCGTCGACGAGAATGGCAACCTCAAAGTGTCGGACTTTGGGCTGAGCGCCTTCAAGGAGTGTCAGAAGCAGGACGGGCTGCTCCACACGACGTGTGGCACACCTGCATATGTTGCACCAGAGATAATCAATAAGAGGGGCTATGATGGAGCAAAAGCAGACATATGGTCTTGCGGTGTCATACTCTTTGTTCTGCTTGCTGGCTACCTCCCATTCCATGACTCAAATCTAATGGAGATGTACCGGAAGATAAGCAAAGGTGATGTCAAGTTCCCACAGTGGTTCACTACTGATGTCCGAAGGCTTCTGTCCAGGCTGCTTGATCCAAATCCAAACATTAGGATCACCGTTGAGAAGCTAGTTGAGCATCCATGGTTCAAGAAGGGGTACAAACCAGCAGTGATGCTATCACAGCCAAATGAATCAAACAACCTCAAGGATGTCCATACTGCTTTCAGTGCTGATCACAAGGACAATGAAGGCAAGGCAAAAGAACCAGCAAGCTCTTTGAAGCCAGTGAGCTTGAATGCATTTGACATCATCTCCCTCTCCAAAGGATTTGATCTGTCAGGCCTGTTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAAATTCTGTAACAAGGGCCTAAGACCTTCTCT CAGGGACATCTGCTGGGATGGTCAGTCAGAGCAT CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAACAGGGAGAT ] [+] EMBL CF295823 [ GCCTCATGTCACAAGGGAAGCACTAGCCACCATAGAAC TCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGATCCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTTTTACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGATGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCATGGCCAGCAAGAGCAAGATATACTTTGCAATGGAGTATGTCCGGGGGTGGTGAGCTCTTCAGCAGGGTAGCCAGGGGGCGACTCAA ] [+] EMBL CF296140 [ AAGCACTAGCCACCATAGAAC TCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGATCCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCATGGCCAGCAAGAGCAAGATATAC ] [+] EMBL AK071552 [ CCCAAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCATGGCCAGCAAGAGCAAGATATACTTTGCAATGGAGTATGTCC GGGGTGGTGAGCTCTTCAGCAGGGTAGCCAGGGGGCGACTCAAGGAGGATGCT GCGAGGAAGTACTTCCAGCAGTTGATAGGGGCTGTGGACTTCTGTCACAGCCGCGGTGTCTACCACCGAGACCTCAAGCCAGAGAACCTCCTCGTCGACGAGAATGGCAACCTCAAAGTGTCGGACTTTGGGCTGAGCGCCTTCAAGGAGTGTCAGAAGCAGGACGGGCTGCTCCACACGACGTGTGGCACACCTGCATATGTTGCACCAGAGATAATCAATAAGAGGGGCTATGATGGAGCAAAAGCAGACATATGGTCTTGCGGTGTCATACTCTTTGTTCTGCTTGCTGGCTACCTCCCATTCCATGACTCAAATCTAATGGAGATGTACCGGAAGATAAGCAAAGGTGATGTCAAGTTCCCACAGTGGTTCACTACTGATGTCCGAAGGCTTCTGTCCAGGCTGCTTGATCCAAATCCAAACATTAGGATCACCGTTGAGAAGCTAGTTGAGCATCCATGGTTCAAGAAGGGGTACAAACCAGCAGTGATGCTATCACAGCCAAATGAATCAAACAACCTCAAGGATGTCCATACTGCTTTCAGTGCTGATCACAAGGACAATGAAGGCAAGGCAAAAGAACCAGCAAGCTCTTTGAAGCCAGTGAGCTTGAATGCATTTGACATCATCTCCCTCTCCAAAGGATTTGATCTGCCAGGCCTGTTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAAATTCTGCAACAAGGGCCTAAGACCTTCTCT CAGGGACATCTGCTGGGATGGTCAGTCAGAGCAT CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAACAGGGAGAT ] [+] EMBL AU056881 [ AAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGA TCAAGCGAGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCATGGCCAGCAAGAGCAAGATATACTTTGCAATGGAGTATGTCC GGGGTGGTGAGCTCTTCAGCAGGGTAGCCAGGGGGCGACTCAAGGAGGATGCTGGCGAGGAAGTACTTCCAGCAGTTGATAGGGGCTGTGGACTTCTGTCACAGCCGCGGTGTCTACCACCGAGACCTTAAGCCAGAGA ] [+] EMBL AU056182 [ AAATACACCAATCGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTCACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGCGCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAGCAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGGGCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGCCATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGATTCAAGCGAGAGATCTCCATCATGCGC ] [-] EMBL CB623024 [ CCAGAGAACCTCCTCGTCGACGAGAAAGGCAACCTCAAAGTGTCGGACTTNGGGCTGAGCGCCTTCAAGGAGTGTCAGAAGCAGGATGGGCTGCTCCACACGACGTGTGGCACACCTGCATATGTTGCACCAGAGATAATCAATAAGAGGGGCTATGATGGAGCAAAAGCAGACATATGGTCTTGCGGTGTCATACTCTTTGTTCTGCTTGCTGGCTACCTCCCATTCCATGACTCAAATCTAATGGAGATGTACCGGAAGATAAGCAAAGGTGATGTCAAGTTCCCACAGTGGTTCACTACTGATGTCCGAAGGCTTCTGTCCAGGCTGCTTGATCCAAATCCAAACACTAGGATCACCGTTGAGAAGCTAGTTGAGCATCCATGGTTCAAGAAGGGGTACAAACCAGCAGTGATGCTATCACAGCCAAATGAATCAAACAACCTCAAGGATGTCCAGACTGCTTTCAGTGCTGATCACAAGGACAATGAAGGCAAGGCAAAAGAACCAGCAAGCTCTTTGAAGCCAGTGAGCTTGAATGCATTTGACATCATCTCCCTCTCCAAAGGATTTGATCTGTCAGGCCTGTTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGACGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTG ] [+] EMBL AK069681 [ CCAGAGATAATCAATAAGAGGGGCTATGATGGAGCAAAAGCAGACATATGGTCTTGCGGTGTCATACTCTTTGTTCTGCTTGCTGGCTACCTCCCATTCCATGACTCAAATCTAATGGAGATGTACCGGAAGATAAGCAAAGGTGATGTCAAGTTCCCACAGTGGTTCACTACTGATGTCCGAAGGCTTCTGTCCAGGCTGCTTGATCCAAATCCAAACATTAGGATCACCGTTGAGAAGCTAGTTGAGCATCCATGGTTCAAGAAGGGGTACAAACCAGCAGTGATGCTATCACAGCCAAATGAATCAAACAACCTCAAGGATGTCCATACTGCTTTCAGTGCTGATCACAAGGACAATGAAGGCAAGGCAAAAGAACCAGCAAGCTCTTTGAAGCCAGTGAGCTTGAATGCATTTGACATCATCTCCCTCTCCAAAGGATTTGATCTGTCAGGCCTGTTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAAATTCTGCAACAAGGGCCTAAGACCTTCTCT CAGGGACATCTGCTGGGATGGTCAGTCAGAGCAT CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAACAG ] [+] EMBL CK085324 [ TTCACTACTGATGTCCGAAGGCTTCTGTCCAGGCTGCTTGATCCAAATCCAAACATTAGGATCACCGTTGAGAAGCTAGTTGAGCATCCATGGTTCAAGAAGGGGTACAAACCAGCAGTGATGCTATCACAGCCAAATGAATCAAACAACCTCAAGGATGTCCATACTGCTTTCAGTGCTGATCACAAGGACAATGAAGGCAAGGCAAAAGAACCAGCAAGCTCTTTGAAGCCAGTGAGCTTGAATGCATTTGACATCATCTCCCTCTCCAAAGGATTTGATCTGTCAGGCCTGTTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGA ] [+] EMBL AU056183 [ GAGACAGAGAGCTTCAAGNTGAAGAAGCAGGATGGACTGNTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGNCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAAATTCTGCAACAAGGGCCTAAGACCTTCTCTCCAGGGACATCTGCTGGGATGGTCAGTCAGAGCAT CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAACAGGGAGATTGACAAAAAAA ] [-] EMBL CF294563 [ TCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAAATTCTGCAACAAGGGCCTAAGACCTTCTCT CAGGGACATCTGCTGGGATGGTCAGTCAGAGCAT CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAAC ] [-] EMBL CF296141 [ GATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGAAGAACGAAAAATTCTGCAACAAGGGCTTAAGACCTTCTCT CAGGGACATCTGCTGGGATGGTCAGTCAGAGCAT CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTTTAAGTCAATCTCGAGACATGCCA ] [+] EMBL AU056882 [ AACAAGGGCCNAAGACCTTCTCTCCAGGGACATCTGCTGGGATGNTCAGTCAGAGCATCCCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAACAGGGAGATTGACAAAAAAA ] [-] EMBL CF293960 [ TGCTGGGATGGTCAGTCAGAGCAT CCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTCCTGTTCTTTCACCAATAGAAACAGGGAGATTGACAACAGCAAAAAA] consensusID : consensus_15072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [AGACTACGGTTCGTGACACAAAAACNGCATCAGCANTAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGACGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCANAGATCTTTGAAGNGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGNTGGAGTACGAAAAATTCTGCAACAAGGGCCTAAGACCTTCTCTCAGGGACATCTGCTGGGATGGTCATGTCAGAGCATCCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATANGAGATACAGNANCAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGNGTTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTNGATGATAATTTTTGCCAGCTCNNCTTGTATAGNAGCAGNTTGTCTACNTGGATCTCCNGNTCTTTCACCAATANAAACAGGGAGATTGACAACAGCATNCTTTTAAAAAAAAAAAAANAAAANAAGCGGCCCGTCNCCC] [+] EMBL CA767283 [AGACTACGGTTCGTGACACAAAAACNGCATCAGCANTAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGACGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCANAGATCTTTGAAGNGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGNTGGAGTACGAAAAATTCTGCAACAAGGGCCTAAGACCTTCTCTCAGGGACATCTGCTGGGATGGTCATGTCAGAGCATCCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATANGAGATACAGNANCAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGNGTTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCTCTTNGATGATAATTTTTGCCAGCTCNNCTTGTATAGNAGCAGNTTGTCTACNTGGATCTCCNGNTCTTTCACCAATANAAACAGGGAGATTGACAACAGCATNCTTTTAAAAAAAAAAAAANAAAANAAGCGGCCCGTCNCCC] consensusID : consensus_15072#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [TGATCTGTCAGGCCTGTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTTTGCAGGGGACACGTTGGAGTACGAAAAATTTTGCAACAAGGGCCTAAGACCTTCTTTCAGGGACATTTGCTGGGATGGTCAGTCAGAGCATCCATCACTGGCACAGTCATCAACTTTGACTCAGTCCTTTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTTTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAAAAAAAAAAAA] [-] EMBL CF295822 [TGATCTGTCAGGCCTGTTGAGAACGACAAAGAGCAGAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGAGCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCAGGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGACACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTTTGCAGGGGACACGTTGGAGTACGAAAAATTTTGCAACAAGGGCCTAAGACCTTCTTTCAGGGACATTTGCTGGGATGGTCAGTCAGAGCATCCATCACTGGCACAGTCATCAACTTTGACTCAGTCCTTTAAGTCAATCTCGAGACATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTTTCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTTTCACTTGAGCATCAGGCTTAGGGCTCTTTGATGATAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15072#0 TAAATTAACTACATAGAGGATGTAAAGGTGTAACATGGCTTAATTTAGAGCGCACCACTG 60 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 ATCCTACAAATAGCATGCAAAACTACAGCCGCTCAACACAAACACCTGGCCTATTTTTAG 120 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GCATCCTCTTCCATCTCCAGAGAAGTGAGCCCCAGCCTCATGTCACAAGGGAAGCACTAG 180 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CCACCATAGAACTCTCTCTCTTTTTCTCCTTCCTCCTAGGAGGATCCCAAATACACCAAT 240 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CGTGTCTTGGATTTTCCCAAACACAGCGCGCACTCTCGCCCTTCACCTCTCCTCCCTCTC 300 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 ACCCTTCCATTACATGGATCAGGGAGGGAGGAAGGAGGCCTGAAGTGGCGCAGAGTAGGC 360 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GCTTGTAAACAAATCCCCCCATTTGCTTCTTTTGCACTGAAGAATCCCTGAAGAATCCAG 420 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CAGGATGGAGAAGAAGGCGTCCATCCTCATGAACCGGTATGAGCTCGGCCGCATGCTCGG 480 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GCAAGGCACCTTCGCCAAGGTGTACCATGCACGGAACCTTGCATCCAACCAGAGCGTCGC 540 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CATCAAGGTCATTGACAAGGAAAAGGTATTGCGTGTCGGCATGATTGACCAGATCAAGCG 600 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 AGAGATCTCCATCATGCGCCTCGTTCGCCACCCCAACATCGTCCAGCTGCACGAGGTCAT 660 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GGCCAGCAAGAGCAAGATATACTTTGCAATGGAGTATGTCCGGGGTGGTGAGCTCTTCAG 720 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CAGGGTAGCCAGGGGGCGACTCAAGGAGGATGCTGCGAGGAAGTACTTCCAGCAGTTGAT 780 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 AGGGGCTGTGGACTTCTGTCACAGCCGCGGTGTCTACCACCGAGACCTCAAGCCAGAGAA 840 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CCTCCTCGTCGACGAGAATGGCAACCTCAAAGTGTCGGACTTTGGGCTGAGCGCCTTCAA 900 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GGAGTGTCAGAAGCAGGACGGGCTGCTCCACACGACGTGTGGCACACCTGCATATGTTGC 960 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 ACCAGAGATAATCAATAAGAGGGGCTATGATGGAGCAAAAGCAGACATATGGTCTTGCGG 1020 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 TGTCATACTCTTTGTTCTGCTTGCTGGCTACCTCCCATTCCATGACTCAAATCTAATGGA 1080 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GATGTACCGGAAGATAAGCAAAGGTGATGTCAAGTTCCCACAGTGGTTCACTACTGATGT 1140 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CCGAAGGCTTCTGTCCAGGCTGCTTGATCCAAATCCAAACATTAGGATCACCGTTGAGAA 1200 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GCTAGTTGAGCATCCATGGTTCAAGAAGGGGTACAAACCAGCAGTGATGCTATCACAGCC 1260 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 AAATGAATCAAACAACCTCAAGGATGTCCATACTGCTTTCAGTGCTGATCACAAGGACAA 1320 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 TGAAGGCAAGGCAAAAGAACCAGCAAGCTCTTTGAAGCCAGTGAGCTTGAATGCATTTGA 1380 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 CATCATCTCCCTCTCCAAAGGATTTGATCTGTCAGGCCTGTTTGAGAACGACAAAGAGCA 1440 consensus_15072#2 ------------------------TGATCTGTCAGGCCTGTT-GAGAACGACAAAGAGCA 35 consensus_15072#1 ------------------------------------------------------------ consensus_15072#0 GAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGA 1500 consensus_15072#2 GAAGGCAGACTCACGGTTCATGACACAAAAACCAGCATCAGCAATAGTGTCAAAGCTAGA 95 consensus_15072#1 ------AGACT-ACGGTTCGTGACACAAAAACN-GCATCAGCANTAGTGTCAAAGCTAGA 52 ***** ******* ************ ********* **************** consensus_15072#0 GCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCA 1560 consensus_15072#2 GCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGATGGACTGGTGAAGCTCCA 155 consensus_15072#1 GCAGATTGCTGAGACAGAGAGCTTCAAGGTGAAGAAGCAGGACGGACTGGTGAAGCTCCA 112 ****************************************** ***************** consensus_15072#0 GGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGAC 1620 consensus_15072#2 GGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCAGAGATCTTTGAAGTGAC 215 consensus_15072#1 GGGATCCAAAGAAGGGAGGAAAGGGCAGCTCGCGATCGATGCANAGATCTTTGAAGNGAC 172 ******************************************* ************ *** consensus_15072#0 ACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGTTGGAGTACGAAAA 1680 consensus_15072#2 ACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTTTGCAGGGGACACGTTGGAGTACGAAAA 275 consensus_15072#1 ACCATCCTTCTTTGTTGTTGAGGTGAAGAAGTCTGCAGGGGACACGNTGGAGTACGAAAA 232 ******************************** ************* ************* consensus_15072#0 ATTCTGCAACAAGGGCCTAAGACCTTCTCTCAGGGACATCTGCTGGGATGGTCA-GTCAG 1739 consensus_15072#2 ATTTTGCAACAAGGGCCTAAGACCTTCTTTCAGGGACATTTGCTGGGATGGTCA-GTCAG 334 consensus_15072#1 ATTCTGCAACAAGGGCCTAAGACCTTCTCTCAGGGACATCTGCTGGGATGGTCATGTCAG 292 *** ************************ ********** ************** ***** consensus_15072#0 AGCATCCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGAC 1799 consensus_15072#2 AGCATCCATCACTGGCACAGTCATCAACTTTGACTCAGTCCTTTAAGTCAATCTCGAGAC 394 consensus_15072#1 AGCATCCATCACTGGCACAGTCATCAACTCTGACTCAGTCCTCTAAGTCAATCTCGAGAC 352 ***************************** ************ ***************** consensus_15072#0 ATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTT 1859 consensus_15072#2 ATGCCATTTAAGTGCAACCTCATAAGAGATGCAGTAACAATCCATTTTCCTCTCTCCTTT 454 consensus_15072#1 ATGCCATTTAAGTGCAACCTCATANGAGATACAGNANCAATCCATTTTCCTCTCTCCTTT 412 ************************ ***** *** * *********************** consensus_15072#0 TCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCT 1919 consensus_15072#2 TCCCTTTCATCAAAGTGCTGAGCCTGAGAGTATTTTCACTTGAGCATCAGGCTTAGGGCT 514 consensus_15072#1 TCCCTTTCATCAAAGNGTTGAGCCTGAGAGTATTCTCACTTGAGCATCAGGCTTAGGGCT 472 *************** * **************** ************************* consensus_15072#0 CTTTGATGATAATTTTTGCCAGTTTTCCTTGTATAGTAGCAGTTTGTCTACATGGATCTC 1979 consensus_15072#2 CTTTGATGATAAAAAAAAAAAA-------------------------------------- 536 consensus_15072#1 CTTNGATGATAATTTTTGCCAGCTCNNCTTGTATAGNAGCAGNTTGTCTACNTGGATCTC 532 *** ******** * consensus_15072#0 CTGTTCTTTCACCAATAGAAACAGGGAGATTGACAAAAAAAAAAAA-------------- 2025 consensus_15072#2 ------------------------------------------------------------ consensus_15072#1 CNGNTCTTTCACCAATANAAACAGGGAGATTGACAACAGCATNCTTTTAAAAAAAAAAAA 592 consensus_15072#0 ----------------------- consensus_15072#2 ----------------------- consensus_15072#1 ANAAAANAAGCGGCCCGTCNCCC 615 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||