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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1185 fasta sequence
[GAAGAGAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC-TGATCGGTGTACTGGCCATCTTGTT-CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC-AACCAAGCACTT-CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG-ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG-CATGAATCTTGAGT-CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA-CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA-CAAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAATTTACGTTAGTGTGGTTGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAAAAGTAATTCTCAGTTCTTGTTACTTTTAGTTTGGTTAAAAAA]
[+] EMBL AK059921 [GAAGAGAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTAGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAG ]
[+] EMBL AU068752 [ ACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTNATAGGTGGCG AACTGTGTTGTGGGTTCTCTTTGAAGTTGTTNATTACCATTTCCTCACTCTGATATCTCATGTCCTTNATCGGTGTACTGGCCATCTTGTT CTT ]
[+] EMBL AY164900 [ ACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTTTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACCCTGGAACCTG ]
[+] EMBL AU165546 [ TTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTTCCTAATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAAT ]
[+] EMBL CF277603 [ TAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCAT ]
[+] EMBL CA755342 [ TAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTT ]
[+] EMBL CF277492 [ TAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCG ]
[+] EMBL AK104196 [ CGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGC ]
[+] EMBL AK072628 [ GAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGCCTGCA ]
[+] EMBL CB683394 [ GGGGCTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAAATTTGTGTNGTGGGAG ]
[+] EMBL CF306542 [ ACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGT ]
[+] EMBL AU165547 [ ACTGACATCAAACCAAGCATTTCCACTTGCTNCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTGAATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAAaaa ]
[-] EMBL CF277604 [ AAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAGCTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA AAAa ]
[+] EMBL BI796127 [ gggTAGAAATGAAACACCATATCACCCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAACCTGTCGATATGATGTGCTTGGTGTGCAACTCTGCAATGTTAATATACCCAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAATTTACGTTAGTGTGGTTGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAA ]
[+] EMBL C96626 [ ACAACATATGCCATGAATCTTGAGTCCCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGNGTGTCTTGTGTNGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAATTTACGTTAGTGTGGTTGTAATGTNGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTATATCGCTCCAAGTAATTCTCAGTTCTTGTTACTTTTAGTTTGGTTAAAAAA]
consensusID : consensus_15074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1166 fasta sequence
[GAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGGTAAGTGTGAAATTCGTGCGTTTTCTTTGTCTCGGGGTGTAGATTGCTCGTTTAGGGCAGGAATTGTGTCCGGATTGTGTGCTGTTCCTCTCTGTGTTAATCAGTAGGGTTCTTGAGGTGGATATAATAATTGCGTGGCTTTGCCTTTGATTATCGAGCTCTTGAGTAGCGGGTAGGTAGGTATACTTCAGTTGAGTTGTTGGCGTTTAGGCCTGATTAACCAAATTGATTTGGATGATTATCTAAGAAGCAAAATTGGCTTTGATTCTGAAGAATTCTAAGCTGAATTAGCTTCTTTCCCATCCTAGAATTAATGGTTATAGTTGTTTGTTCTTCTTGAAAAGCACAAGGGCCATGTGAACTCCTCAAACTTTTCTTCTGTGTTGGTGGAAATTAATCTTCGTTTTGTTTATGTTGTTATTTAATTCCATGTACCTGATCAATCATATACTGCTGGTTGAAACGGAGCTAGTTATGGTGTTTTAATCAAACGGCGGGATTTTCCTCGCCTGCAGACAGTATTTGTTCACAAAATCATCGGAGAGGGAGTATATTTTGTGGCTTGGTTATCCGGTACAGAGTTATACCAATAACCATCTGAAAGCTTCTAGAAAACATTAAAATTAGGCAAACCATAATAAATTAGGGAAACCATAAGTGTATGAATATTTAATCGGCGTCATACGGACAATTTGTCTTGTGTTCATAAACATAAGAATGTTAAGTTACCAATCGTTAGCTCCTTCCAAACTCCAGAAGTTCTGTTACTTTCATAAACCAAATCATGAATCACTAGAAAATACAAATGAAAATGGTTTTAGCAATTTGGAATTTTTGAGCAAAGAGTTCAAAGGGGAGAAATTCATTGTCCTGTTAGATGTGTTTCATGAGGAGGATAGGATGACAATTGTGAATTGTAGGAAAGGTTAGAGAGCATATCAT]
[+] EMBL AK064290 [GAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGGTAAGTGTGAAATTCGTGCGTTTTCTTTGTCTCGGGGTGTAGATTGCTCGTTTAGGGCAGGAATTGTGTCCGGATTGTGTGCTGTTCCTCTCTGTGTTAATCAGTAGGGTTCTTGAGGTGGATATAATAATTGCGTGGCTTTGCCTTTGATTATCGAGCTCTTGAGTAGCGGGTAGGTAGGTATACTTCAGTTGAGTTGTTGGCGTTTAGGCCTGATTAACCAAATTGATTTGGATGATTATCTAAGAAGCAAAATTGGCTTTGATTCTGAAGAATTCTAAGCTGAATTAGCTTCTTTCCCATCCTAGAATTAATGGTTATAGTTGTTTGTTCTTCTTGAAAAGCACAAGGGCCATGTGAACTCCTCAAACTTTTCTTCTGTGTTGGTGGAAATTAATCTTCGTTTTGTTTATGTTGTTATTTAATTCCATGTACCTGATCAATCATATACTGCTGGTTGAAACGGAGCTAGTTATGGTGTTTTAATCAAACGGCGGGATTTTCCTCGCCTGCAGACAGTATTTGTTCACAAAATCATCGGAGAGGGAGTATATTTTGTGGCTTGGTTATCCGGTACAGAGTTATACCAATAACCATCTGAAAGCTTCTAGAAAACATTAAAATTAGGCAAACCATAATAAATTAGGGAAACCATAAGTGTATGAATATTTAATCGGCGTCATACGGACAATTTGTCTTGTGTTCATAAACATAAGAATGTTAAGTTACCAATCGTTAGCTCCTTCCAAACTCCAGAAGTTCTGTTACTTTCATAAACCAAATCATGAATCACTAGAAAATACAAATGAAAATGGTTTTAGCAATTTGGAATTTTTGAGCAAAGAGTTCAAAGGGGAGAAATTCATTGTCCTGTTAGATGTGTTTCATGAGGAGGATAGGATGACAATTGTGAATTGTAGGAAAGGTTAGAGAGCATATCAT]
consensusID : consensus_15074#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence
[GGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGTGTACTGGCCATCTTGTTCTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTGATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTTTATCANNNNNNNNNNNNNNNGGTTGATCANNNNGCTGNNNNNNNN]
[+] EMBL CF196918 [GGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGTGTACTGGCCATCTTGTTCTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTGATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTTTATCANNNNNNNNNNNNNNNGGTTGATCANNNNGCTGNNNNNNNN]
[+] EMBL AA752351 [ TGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGTGTACTGGCCATCTTGTTCTTATGGTCAAAGGCAACCATCTTCATCAAGAAGAGTCCGCCTAGTATTCCAAAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACGGCGCACTGACATCGACCGGACACTTCACTTGCTTCGGGAGATTTCTCTACGGAATGAC ]
consensusID : consensus_15074#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence
[TGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACCCTTGCTTTCCGTTACCAAAAGGGCCAATTCCCCG]
[+] EMBL CF312888 [TGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACCCTTGCTTTCCGTTACCAAAAGGGCCAATTCCCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15074#0 GAAGAGAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGAT 60
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 -----GAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGAT 55
consensus_15074#0 CTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAG 120
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 CTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAG 115
consensus_15074#0 GCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGG 180
consensus_15074#2 --------------------------GGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGG 34
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 GCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGG 175
consensus_15074#0 CTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTA 240
consensus_15074#2 CTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTA 94
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 CTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGGTAAGTGTGAA 235
consensus_15074#0 CTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGG 300
consensus_15074#2 CTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGG 154
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 ATTC---------GTGCGTTTTCTTTGTCTCGGGGTGTAGATTGCTCGTTTAGGGCAGGA 286
consensus_15074#0 GTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGT 360
consensus_15074#2 GTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGT 214
consensus_15074#3 -----------------------------------------------------------T 1
consensus_15074#1 ATTGTGTCCGGATTGTGTG-----CTGTTCCTCTCTGTGTTAATCAGTA---GGGTTCTT 338
*
consensus_15074#0 GTACTGGCCATCTTGTTC---TTA--TGGTCCAAGGCAACCATCTTCATCAAGAAGAGTC 415
consensus_15074#2 GTACTGGCCATCTTGTTC---TTA--TGGTCCAAGGCAACCATCTTCATCAAGAAGAGTC 269
consensus_15074#3 GTAATGTAGATCGTGCTCAAGTAA--TTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAA 59
consensus_15074#1 GAGGTGGATATAATAATTGCGTGGCTTTGCCTTTGATTATCGAGCTCTTGAGTAGCGGGT 398
* ** ** * * * * * * *
consensus_15074#0 CACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCAC 475
consensus_15074#2 CACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCAC 329
consensus_15074#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 119
consensus_15074#1 AGGTAGGTATACTTCAGTTGAG--TTGTTGGCGTTTAGGCCTGATTAACCAAATTGATTT 456
* * * *
consensus_15074#0 TGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAG-GGCATGAC 534
consensus_15074#2 TGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAG-GGCATGAC 388
consensus_15074#3 AAAAAAAAAAAAAAAAACAAAAACC---CTTGCTTTCCG---TTACCAAAA-GGGCCAAT 172
consensus_15074#1 GGATGATTATCTAAGAAGCAAAATTGGCTTTGATTCTGAAGAATTCTAAGCTGAATTAGC 516
* * * * *** ** * * *
consensus_15074#0 CTGATGAAGTTTTTAGGCGTGATCGTT---GCTCTCTGGATTCTTTCTGAAATTGGAAGC 591
consensus_15074#2 CTGATGAAGTTTTTAGGCGTGATCGTT---GCTCTCTGGATTCTTTCTGAAATTGGAAGC 445
consensus_15074#3 TCCCCG------------------------------------------------------ 178
consensus_15074#1 TTCTTTCCCATCCTAGAATTAATGGTTATAGTTGTTTGTTCTTCTTGAAAAGCACAAGGG 576
consensus_15074#0 CTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGA--TGCTCCATACAGTGCCGA 649
consensus_15074#2 CTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGA--TGCTCCATACAGTGCCGA 503
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 CCATGTGAACTCCTCAAACTTTTCTTCTGTGTTGGTGGAAATTAATCTTCGTTTTGTTTA 636
consensus_15074#0 TCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAAC 709
consensus_15074#2 TCTTTTATCANNNNNNNNNNNNNNNGGTTGATCANNNNGCTGNNNNNNNN---------- 553
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 TGTTGTTATTTAATTCCATGTACCTGATCAATCATATACTGCTGGTTGAAACGGAGCTAG 696
consensus_15074#0 TCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAG 769
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 TTATGGTGTTTTAATCAAACGGCGGGATTTTCCTCGCCTGCAGACAGTATTTGTTCACAA 756
consensus_15074#0 CAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGG 829
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 AATCATCGGAGAGGGAGTATATTTTGTGGCTTGGTTATCCGGTACAGAGTTATACCAATA 816
consensus_15074#0 AGTGTTGGCATCTCACATCACAACATATGCATGAATCTTGAGTCCTTGACTTGGTTTGGC 889
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 ACCATCTGAAAGCTTCTAGAAAACATTAAAATTAGGCAAACCATAATAAATTAGGGAAAC 876
consensus_15074#0 CCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTT 949
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 CATAAGTGTATGAATATTTAATCGGCGTCATACGGACAATTTGTCTTGTGTTCATAAACA 936
consensus_15074#0 GTGTAGTAAACTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATACAAG 1009
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 TAAGAATGTTAAGTTACCAATCGTTAGCTCCTTCCAAACTCCAGAAGTTCTGTTACTTTC 996
consensus_15074#0 ATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATA-CCTATAAT 1068
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 ATAAACCAAATCATGAATCACTAGAAAATACAAATGAAAATGGTTTTAGCAATTTGGAAT 1056
consensus_15074#0 TTACGTTAGTGTGGTTGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCT 1128
consensus_15074#2 ------------------------------------------------------------
consensus_15074#3 ------------------------------------------------------------
consensus_15074#1 TTTTGAGCAAAGAGTTCAAAGGGGAGAAATTCATTGTCCTGTTAGATGTGTTTCATGAGG 1116
consensus_15074#0 TTCTTAAAAAAAAAAAAGTAATTCTCAGTTCTTGTTACTTTTAGTTTGGTTAAAAAA 1185
consensus_15074#2 ---------------------------------------------------------
consensus_15074#3 ---------------------------------------------------------
consensus_15074#1 AGGATAGGATGACAATTGTGAATTGTAGGAAAGGTTAGAGAGCATATCAT------- 1166
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||