cluster # 15086

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Oryza sativa
cluster # 15086 cluster # 15086 Sequences # 20 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15086#0 length = 1132 sequences # 15
consensus_15086#1 length = 691 sequences # 1

consensus_15086#2 length = 511 sequences # 1
consensus_15086#3 length = 486 sequences # 3

consensusID : consensus_15086#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 1132
fasta sequence

                              [GCNANG-ATTGCTTTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC-TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA-GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC-TTGTGGTGTGTGTGATGAAAC-CACAATGATCAAAC-CGAGTGTCTGAATCTCTGAATTG-TTTTTTTTAGCACAATGATTGTGTACCAAACCCTCTGTTGCTGTGTGCGGTGGCTGGCTCACCTGATGGCCTTTGTGCTACTCCTGTCGTCTTCAAAGTATCTGACGGT]

[+] EMBL OSS2993A             [ CNANG ATTGCTTTGANCTGAAGCTGTTCGTNTNACTCTNCNACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGANAGGTTTCANAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL OSS2948A             [ ccANGNATTGCTTTGAGCTGAAGCTGTTCGTNTNACNCTCCTACACCTTCCAGGCTATCCGGAATCGGNAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTNAAAGGTTTCAAAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGNTGACAGTAAAGAGGACCAGAGGCTTCCTCATCATCGTNAGCCCAAAGANTTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAnc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AF068332             [gggcaG ATTGCGTTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAAaaaaa                                                                                                                                                                               ]
[+] EMBL OSS2395A             [             TTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTNAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGACTTGGGAGAATGATGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSS12166A            [             TTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTNAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGNAAAATTTCTTTGAAGGACACTTGCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF295043             [                                  GACTCTTCTACACCTTCCAGGCTATCCGGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCANAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCANAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CF293513             [                                                                        GGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AK099497             [                                                                             CCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC TTGTGGTGTGTGTGATGAAAC CACAATGATCAAAC CGAGTGTCTGAATCTCTGAATTG TTTTTTTTAGCACAATGATTGTGTACCAAACCCTCTGTTGCTGTGTGCGGTGGCTGGCTCACCTGATGGCCTTTGTGCTACTCCTGTCGTCTTCAAAGTATCTGACGGT]
[+] EMBL CF281713             [                                                                              CCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATAGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGAC TGGGAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATTTGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTAT AACAGGGGGTGGAACTCAAGCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CF311196             [                                                                              CCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAGGTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTACATGGATGACAGTGAAGAGGACCAGAAGCTTCCTC TCATCGTGAGCCCAAA AATTCATTCCTCTTA CAAACTTTCAGA TTAGGAATATTAAGCTGGCGCCTGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AK061653             [                                                                                                                                                                                                                                                                                                                                                                                                                                                   CTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC TTGTGGTGTGTGTGATGAAAC CACAATGATCAAAC CGAGTGTCTGAATCTCTGAATTG TTT                                                                                                          ]
[-] EMBL CF281714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGATGTTGCAATGGGCTCCTACCGACATATTACATCATTTGGCAAAAATTAGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC                                                                                                                                                                           ]
[+] EMBL BE228420             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGGGCATGATTGTTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGANCCTGTCTGGACGCCGTACAACCGTCCCCANGACCATCTGCCAGCTAAAAAGGAATATGTCCAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAANCTCGTTAAAGGCATATCAAGATNTGCTTCCTANTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCANTATTTTGCACAAACCTGCTTAAAATCTCCCNGAAAATACGCACGTCACCATGTCNGAATGTTTATATACNATAATGACACTTCAGTCCACAGTCCGCAAGGGACTAATGACAATCANTGTACTTTGTGGTGTGTGTGATGAAAC CNCCATGATCNAAC CNAATGTCTGAATCTCTGAATTGTTTTTTTTTAACACAAT                                                                                             ]
[-] EMBL BU673448             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCTGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACCATCATTGTACTTTGTGGTGTGTGTGATGAAACNCACCATGATCAAACNCGAGTGTC                                                                                                                             ]
[-] EMBL CF293514             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACA GGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGCTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTAC TTGTGGTGTGTGTGATGAAAC CACAATGATCAAAC CGAGTGTCTGAATCTCTGAATTG TTTTTTTTAGCACAATGATTGTGTACCAAAa                                                                              ]




>consensus_15086#0
GCNANGATTGCTTTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCC
GGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAG
GTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTAC
ATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATT
CCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGACTGG
GAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATT
TGTGATGTGTGTCCAGAAAAGCTGCCAAACTATGAGGCTAAGCTGAAAAATTTCTTTGAA
GAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCGAT
GTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTT
TTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATG
CGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCA
GCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCT
CGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATAC
TGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGG
CAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGA
GTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCAT
TGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAA
TTGTTTTTTTTAGCACAATGATTGTGTACCAAACCCTCTGTTGCTGTGTGCGGTGGCTGG
CTCACCTGATGGCCTTTGTGCTACTCCTGTCGTCTTCAAAGTATCTGACGGT

consensusID : consensus_15086#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [CATTTGTGATGTGTNTCCCAGAAAAGCTGCCAAACTTNTGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACNCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCNCCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGANAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTNCCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTNAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU096103             [CATTTGTGATGTGTNTCCCAGAAAAGCTGCCAAACTTNTGAGGCTAAGCTGAAAAATTTCTTTGAAGAACACTTGCATACTGATGAAGAGATACNCTATTGTCTTGAGGGAAGTGGATACTTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTGTTTTGCCTGCGGGAATGTATCNCCGCTTCACATTGGACAGTGACAACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGANAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTNCCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTNAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_15086#1
CATTTGTGATGTGTNTCCCAGAAAAGCTGCCAAACTTNTGAGGCTAAGCTGAAAAATTTC
TTTGAAGAACACTTGCATACTGATGAAGAGATACNCTATTGTCTTGAGGGAAGTGGATAC
TTCGATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATG
ATTGTTTTGCCTGCGGGAATGTATCNCCGCTTCACATTGGACAGTGACAACTACATCAAG
GCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCAT
CTGCCAGCTAGAAAGGAGTATGTCGANAAAATTATCAACAGGGGTGGAACTCAAGCTGTC
GAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTAC
AGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTNCCGACATCTTACATC
ATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTNAAAATACGCACGTCACCAT
GTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC
AATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATC
TCTGAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15086#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 511
fasta sequence

                              [CCCGCTTCACATTGGACAGTGACACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAGAAATTATCCACCACGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCCATGTCAGAGTGTTTATATACCATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACCATCATTGTACTTGTGGTGTGTGTGATGAAACCACATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACATGATTGTGTACCCAACCCTCTAAAAAAAAAA]

[+] EMBL BQ906367             [CCCGCTTCACATTGGACAGTGACACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAGAAATTATCCACCACGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCCATGTCAGAGTGTTTATATACCATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACCATCATTGTACTTGTGGTGTGTGTGATGAAACCACATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACATGATTGTGTACCCAACCCTCTAAAAAAAAAA]




>consensus_15086#2
CCCGCTTCACATTGGACAGTGACACTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCC
TGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGA
AAGAAATTATCCACCACGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAA
GATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTAT
CAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAAC
CCGCTTAAAATCTCCCTGAAAATACGCACGTCACCCATGTCAGAGTGTTTATATACCATA
ATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACCATCATTGTACTTGTGGTGTGT
GTGATGAAACCACATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACA
TGATTGTGTACCCAACCCTCTAAAAAAAAAA

consensusID : consensus_15086#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 486
fasta sequence

                              [CTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGT]

[-] EMBL CF311197             [CTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAATTGTTTTTTTTAGCACAAAAAAAAAAAAAAAAAAAAACACTGTCAGCCGT]
[-] EMBL CF295044             [                                                     ACCGTCCCCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAA CCAAAAAAAATCTCCCTGAAAATACAAAAGTCACCATGTCAGAGTAAAAAAATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATCTCTGAA                                                  ]
[+] EMBL AU097142             [                                                                    ATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAACTCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAAaaaaa                                                                  ]




>consensus_15086#3
CTACATCAAGGCAATGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCC
CCATGACCATCTGCCAGCTAGAAAGGAGTATGTCGAAAAAATTATCAACAGGGGTGGAAC
TCAAGCTGTCGAAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGT
TACACTCTACAGATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGAC
ATCTTACATCATTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGC
ACGTCACCATGTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGG
GACTAATGACAATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAG
TGTCTGAATCTCTGAATTGTTTTTTTTAGCACAAAAAAAAAAAAAAAAAAAAACACTGTC
AGCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15086#1      ------------------------------------------------------------
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      GCNANGATTGCTTTGAGCTGAAGCTGTTCGTGTGACTCTTCTACACCTTCCAGGCTATCC 60
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      ------------------------------------------------------------
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      GGAATCGGGAGGGTTTCCCAATAGGAAAGCAACTCAGGACTCAGGAGCGGCGTCTGAGAG 120
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      ------------------------------------------------------------
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      GTTTCAGAGATGGAGAACCAGTTCCAGGATGGCAAGGAGGAGGTCATCGAAGCTTGGTAC 180
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      ------------------------------------------------------------
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      ATGGATGACAGTGAAGAGGACCAGAGGCTTCCTCATCATCGTGAGCCCAAAGAATTCATT 240
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      ------------------------------------------------------------
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      CCTCTTAGCAAACTTTCAGAGTTAGGAATATTAAGCTGGCGCCTGAATGCTGATGACTGG 300
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      --------------------------------------------------------CATT 4
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      GAGAATGATGAGAACCTCAAGAAAATCCGTGAGGCCAGGGGATACTCTTACATGGATATT 360
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      TGTGATGTGTNTCCCAGAAAAGCTGCCAAACTTNTGAGGCTAAGCTGAAAAATTTCTTTG 64
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      TGTGATGTGTGTCC-AGAAAAGCTGCCAAACT-ATGAGGCTAAGCTGAAAAATTTCTTTG 418
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      AAGAACACTTGCATACTGATGAAGAGATACNCTATTGTCTTGAGGGAAGTGGATACTTCG 124
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      AAGAACACTTGCATACTGATGAAGAGATACGCTATTGTCTTGAGGGAAGTGGATACTTCG 478
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      ATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTG 184
consensus_15086#3      ------------------------------------------------------------
consensus_15086#0      ATGTCAGGGACCAAAATGATCAGTGGATCCGTGTAGCAGTGAAGAAAGGGGGCATGATTG 538
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      TTTTGCCTGCGGGAATGTATCNCCGCTTCACATTGGACAGTGACAACTACATCAAGGCAA 244
consensus_15086#3      ----------------------------------------------CTACATCAAGGCAA 14
consensus_15086#0      TTTTGCCTGCGGGAATGTATCACCGCTTCACATTGGACAGTGACAACTACATCAAGGCAA 598
consensus_15086#2      ---------------------CCCGCTTCACATTGGACAGTGACA-CTACATCAAGGCAA 38
                                                                     **************

consensus_15086#1      TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 304
consensus_15086#3      TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 74
consensus_15086#0      TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 658
consensus_15086#2      TGCGGCTCTTTGTGGGAGAGCCTGTCTGGACGCCGTACAACCGTCCCCATGACCATCTGC 98
                       ************************************************************

consensus_15086#1      CAGCTAGAAAGGAGTATGTCGANA-AAATTATCAACA--GGGGTGGAACTCAAGCTGTCG 361
consensus_15086#3      CAGCTAGAAAGGAGTATGTCGAAA-AAATTATCAACA--GGGGTGGAACTCAAGCTGTCG 131
consensus_15086#0      CAGCTAGAAAGGAGTATGTCGAAA-AAATTATCAACA--GGGGTGGAACTCAAGCTGTCG 715
consensus_15086#2      CAGCTAGAAAGGAGTATGTCGAAAGAAATTATCCACCACGGGGTGGAACTCAAGCTGTCG 158
                       ********************** * ******** **   *********************

consensus_15086#1      AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 421
consensus_15086#3      AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 191
consensus_15086#0      AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 775
consensus_15086#2      AAGCTCGTTAAAGGCATATCAAGATGTGCTTCCTAGTTCGGTGTTCTGTTACACTCTACA 218
                       ************************************************************

consensus_15086#1      GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTNCCGACATCTTACATCA 481
consensus_15086#3      GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCA 251
consensus_15086#0      GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCA 835
consensus_15086#2      GATACTGAATAAACTGTGCTATCAGCTGTTGCAATGGGCTCCTACCGACATCTTACATCA 278
                       ******************************************* ****************

consensus_15086#1      TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTNAAAATACGCACGTCACC-AT 540
consensus_15086#3      TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACC-AT 310
consensus_15086#0      TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACC-AT 894
consensus_15086#2      TTTGGCAGTATTTTGCACAAACCCGCTTAAAATCTCCCTGAAAATACGCACGTCACCCAT 338
                       *************************************** ***************** **

consensus_15086#1      GTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 600
consensus_15086#3      GTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 370
consensus_15086#0      GTCAGAGTGTTTATATACAATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 954
consensus_15086#2      GTCAGAGTGTTTATATACCATAATGACACTTCAGTCCACAGTCAGCAAGGGACTAATGAC 398
                       ****************** *****************************************

consensus_15086#1      AATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATC 660
consensus_15086#3      AATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATC 430
consensus_15086#0      AATCATTGTACTTGTGGTGTGTGTGATGAAACCACAATGATCAAACCGAGTGTCTGAATC 1014
consensus_15086#2      CATCATTGTACTTGTGGTGTGTGTGATGAAACCACA-TGATCAAACCGAGTGTCTGAATC 457
                        *********************************** ***********************

consensus_15086#1      TCTGAA-----------AAAAAAAAAAAAAAAA-----------AAAAAAAAA------- 691
consensus_15086#3      TCTGAATTGTTTTTTTTAGCACAAAAAAAAAAA-----------AAAAAAAAAACACTGT 479
consensus_15086#0      TCTGAATTGTTTTTTTTAGCACAATGATTGTGT-----------ACCAAACCCTCTGTTG 1063
consensus_15086#2      TCTGAATTGTTTTTTTTAGCACATGATTGTGTACCCAACCCTCTAAAAAAAAAA------ 511
                       ******           *  * *                     *  ***          

consensus_15086#1      ------------------------------------------------------------
consensus_15086#3      CAGCCGT----------------------------------------------------- 486
consensus_15086#0      CTGTGTGCGGTGGCTGGCTCACCTGATGGCCTTTGTGCTACTCCTGTCGTCTTCAAAGTA 1123
consensus_15086#2      ------------------------------------------------------------
                                                                                   

consensus_15086#1      ---------
consensus_15086#3      ---------
consensus_15086#0      TCTGACGGT 1132
consensus_15086#2      ---------