These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1279 fasta sequence [CTGAAGGAGTAGAAAACACTCTCTCTCCCCATGAATTCGCTCGCTTTCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATC-GTCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAAT-TTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCC-AGTTCAGCTT-GGTGGACATTGCGTAT-GTTCCA-TTTATTG-AAAGG-TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA-ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT-TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTCTAATAAATCAATGCTTCTTGTATCATTAAAACTAGTTGTCAGGATGATTTTCATAGTGAAGTACTTCTGCAAATATGCTAAGCAGAAGTCAAC] [+] EMBL CF294777 [CTGAAGGAGTAGAAAACACTCTCTCTCCCCATGAATTCGCTCGCTTTCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATC GTCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCCGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTGCCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATGTTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGA ] [+] EMBL CF293752 [ CCATGAATTCGCTCGCTTTCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATC GTCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCACCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGCACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACA ] [+] EMBL CB683417 [ cccaccctTTCGCTCGCTTTCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATCTGGCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGGTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAAT TTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCC ] [+] EMBL AK065887 [ TCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATC GTCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAAT TTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCC AGTTCAGCTT GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTCTAATAAATCAATGCTTCTTGTATCATTATTACTAGTTGTCAGGATGATTTTCATAGTGAAGTACTTCTGCAAATATGCTAAGCAGAAGTCAAC] [+] EMBL CB682761 [ AGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAAT TTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCC AGTTCAGCTT GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCT ] [+] EMBL CF291380 [ CTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAAT TTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGC ] [+] EMBL AK061849 [ CCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAAT TTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCC AGTTCAGCTT GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGC ] [-] EMBL CF294778 [ CATTGACACCAAT TTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCC AGTTCAGCTT GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGAAAAAAGTGCTTCATTTTAGCATATAGATTATCTTGAATAAGATAAAAAAAATCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTTAAAACTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTCTAATAAATGAATTTTTTTTGTATCATTAAAAaa ] [-] EMBL CB683861 [ GACACCAAT TTCGAAGGGCCAGCATTACTCCTTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCC AGTTCAGCTT GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGGGTTGTCTAATAAATC ] [-] EMBL CF295045 [ CGCCAAGGCAGATGTGTGCGATGAGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCATTCTTCCTTGGCC AGTTCAGCTT GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAANTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTCCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTCTAATAAATCAATGCTTCTTGTATCAAAAAA ] [-] EMBL CF314421 [ CGATGGCCCATTTTTCCTTGGCC AGTTCAGCTT GGTGGACATTGGGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTTTTTTTTGGTATAAAGAACTTCGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCCCAGTTTTTGCTTGAACACCCAAAAAAGCGTTTTGGGATTGCCTGAAAATGTGACCAAGGATGAACCCCCAACAACCTTCGATGGAGACAGGGAGTTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTCCATTTTAGCATATGGTTTATTTTGAATAAGATAATGCATGTCATGCAGACCATGGTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGGGTTGTTTAAAAAAaaaaaaaaa ] [-] EMBL AU066100 [ cgGAGGGCCCATCCCTCCNTGGCCAAGTCCAACTTGGGNGGAAATTCCGTATGGTTCCATTTTATTGNAAAGGTTTTCAGANATCCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCANCCCTCCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAA CTTCGCGGGACGTTGTCTAATAAATCAATGCTTCTTGT ] [-] EMBL CF293753 [ T GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTCTAATAAAaaa ] [-] EMBL CF291381 [ GGTGGACATTGCGTAT GTTCCA TTTATTG AAAGG TTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCA ACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTCTAATAAAaaaa ] [-] EMBL OSS4005A [ cCCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTT TGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAA CTTCGCGGGGCGTTGTCTAATAAATCAATGCTTCTTGT ] consensusID : consensus_15088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 640 fasta sequence [TGACTGGACTGAAGGAGTAGAAAGTCCCATCGCCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATTTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGA-TGCGTTCAACA-AAGCATCGT-ACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGANGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCAT] [+] EMBL CF277645 [TGACTGGACTGAAGGAGTAGAAAGTCCCATCGCCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATTTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGA TGCGTTCAACA AAGCATCGT ACTCATCCATAGTCGCCAAGGGAGATGTGTGCGATGANGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGATGGCCCAT] [+] EMBL CB965755 [ ACCGGCAAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGACCTTACGCGCAGCGCGCGTGGATTGCCATGAACTACAAGGGTTTGCAAGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGACCACAGCAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATTTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAGGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATTGCGTTCAACACAAGCATCGTCACTCAc ] consensusID : consensus_15088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 613 fasta sequence [GGAGTAGAAAGAATTCGCTCGCTTTCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATCGTCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGC-AAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATNTTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCAT] [+] EMBL CF314420 [GGAGTAGAAAGAATTCGCTCGCTTTCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATCGTCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGC AAGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATNTTCGAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTTGCGTACACTGATGCGTTCAACAAAGCATCGTACTCAT] [+] EMBL CF295046 [ TCCCTCGCGGCCGATGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATCGTCGCGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCCAAGAATCTCTCCTTGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCTATGCTCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTCGATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGCGCGCGTGGATTGCCAGGAACTACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAGACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGCACAACAATCAGGTGAAAGG ] consensusID : consensus_15088#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [GCCGACCCAACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAAAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTTTGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTTTAATAAAAAAAAAAAAAAAAAA] [+] EMBL AT003754 [GCCGACCCAACCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGACCCACAGTTTTTGCTTGAACACACAAAAAAGCGTCTTGGGATTGCCTGAAGATGTGACCAAGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAAAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATGCAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTTTGGCTGTGTACAGCTGTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTTTAATAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ----------------------GGAGTAGAAAGAATTCGCTCGCTTTCCCTCGCGGCCGA 38 consensus_15088#0 CTGAAGGAGTAGAAAACACTCTCTCTCCCCATGAATTCGCTCGCTTTCCCTCGCGGCCGA 60 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------TGACTGGACTGAAGGAGTAGAAA-GTCCCATCGCCG 35 consensus_15088#2 TGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATCGTCG 98 consensus_15088#0 TGCTCCCCGTCACCACTGACGCGCCCCTCCACCTCCCGTAGTTCTTCCGTCCCATCGTCG 120 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 CGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCC 95 consensus_15088#2 CGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCC 158 consensus_15088#0 CGCACAATAAAGATTCGCCCGAGCTCGCGAAGCGTCGCCCGGTGCAACCTCCGCGACGCC 180 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 AAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGC 155 consensus_15088#2 AAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGC 218 consensus_15088#0 AAGAATCTCTCCCCGTCCCGCACCGTCGCCATGGCTGCCGCGGCCGCCGCACCGGCAAGC 240 consensus_15088#3 ---------------------------------GCCGACCCAACCTTCAGAA-ATTCATC 26 ** * * * ** * * * * consensus_15088#1 TCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTC 215 consensus_15088#2 TCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTC 278 consensus_15088#0 TCTGAGAAGGAAGTGCTCCCCCCTTCCCTGACCTCCTCATCGGAGCCCCCTCCCCTCTTC 300 consensus_15088#3 GAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGA---CCCACAGTTTTTG 83 ** * * * * * * * ** * *** *** * * ** consensus_15088#1 GATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGC-GCGCGTGGAT 274 consensus_15088#2 GATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGC-GCGCGTGGAT 337 consensus_15088#0 GATGGAACCACCAGGTTGTACGTTGCGTACCACTGCCCTTACGCGCAGC-GCGCGTGGAT 359 consensus_15088#3 CTTGAACACACAAAAAAGCGTCTTGGG----ATTGCCTGAAGATGTGACCAAGGATGAAC 139 ** * *** * * *** * * **** * * * * ** * consensus_15088#1 TGCCAGGAAC-TACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAG 333 consensus_15088#2 TGCCAGGAAC-TACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAG 396 consensus_15088#0 TGCCAGGAAC-TACAAGGGTTTGCAGGATAAGATCAAGATTGTCGCGATTGATCTTGCAG 418 consensus_15088#3 CCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATAA------AG 193 ** *** * * * ** *** * * ** * * * * * ** consensus_15088#1 ACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGC 393 consensus_15088#2 ACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGC 456 consensus_15088#0 ACAGGCCTGCTTGGTACAAGGAGAAGGTTTACCCAGAGAACAAGGTACCTTCACTTGAGC 478 consensus_15088#3 ACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGA--ATAAGATAATGCATGTCATGC 251 ** * ***** * ** * * ****** * ** * *** ** * ** consensus_15088#1 ACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATTT-C 452 consensus_15088#2 ACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATNTTC 516 consensus_15088#0 ACAACAATCAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACACCAATTT-C 537 consensus_15088#3 AGACCATGCTTATGGAACAAACTATTATGTATTT--TTGGTTTGGCTGTGTACAGCT--- 306 * * ** * ** ** * * ** **** * * ** ** consensus_15088#1 GAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTT 512 consensus_15088#2 GAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTT 576 consensus_15088#0 GAAGGGCCAGCATTACTCCCTGATGATTCTGAGAAGCAGCAGTTCGCTGAGGAGCTTCTT 597 consensus_15088#3 -----GTTAATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTTT 361 * * * * * * * ** ** * ** * * ** * * ** consensus_15088#1 GCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTG 572 consensus_15088#2 GCGTACACTGATGCGTTCAACAAAGCATCGTACTCAT----------------------- 613 consensus_15088#0 GCGTACACTGATGCGTTCAACAAAGCATCGTACTCATCCATAGTCGCCAAGGGAGATGTG 657 consensus_15088#3 A---ATAAAAAAAAAAAAAAAAAA------------------------------------ 382 * * * ** *** consensus_15088#1 TGCGATGANGGCTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGA 632 consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 TGCGATGAGG-CTGTTGCTGCTCTTGACAAAATAGAAGCTGCTCTGTCAAAGTTCAACGA 716 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 TGGCCCAT---------------------------------------------------- 640 consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 TGGCCCATTCTTCCTTGGCCAGTTCAGCTTGGTGGACATTGCGTATGTTCCATTTATTGA 776 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 AAGGTTTCAGATATTCTTTTCTGGTATAAAGAACTACGATATCACCAAGGGCCGACCCAA 836 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 CCTTCAGAAATTCATCGAGGAAGTGAACAAGATTCATGCCTATACAGAAACCAAACAGGA 896 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 CCCACAGTTTTTGCTTGAACACACAAAGAAGCGTCTTGGGATTGCCTGAAGATGTGACCA 956 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 AGGATGAACCCACAACAACCTGCGATGGAGACAGGGAGCTGGTGCAGTATATAGTAGATA 1016 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 AAGACTAGTGTGCTTCATTTTAGCATATGGTTTATCTTGAATAAGATAATGCATGTCATG 1076 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 CAGACCATGCTTATGGAACAAACTATTATGTATTTTTGGTTTGGCTGTGTACAGCTGTTA 1136 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 ATGTGAATTTCCCGTCATATAATTAATTACAAGCTTCGCGGGGCGTTGTCTAATAAATCA 1196 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ------------------------------------------------------------ consensus_15088#2 ------------------------------------------------------------ consensus_15088#0 ATGCTTCTTGTATCATTAAAACTAGTTGTCAGGATGATTTTCATAGTGAAGTACTTCTGC 1256 consensus_15088#3 ------------------------------------------------------------ consensus_15088#1 ----------------------- consensus_15088#2 ----------------------- consensus_15088#0 AAATATGCTAAGCAGAAGTCAAC 1279 consensus_15088#3 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||