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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 628 fasta sequence
[ANCNACNTG-ACACACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGT-CGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCG-TCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC-TTGTGCAGTTTTGCT-ACTGCTACT-GCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTATCTCTTCAATGGGAATCTTGTTGTTATGTTGCTTTGTGTTACACATAAAAGAAAAGAGTTCAGCAANAA]
[+] EMBL AU070636 [ANCNACNTGNACACACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATNGCGGGCATCAACCGCAA GNC GCNCGGCGGCGc ]
[+] EMBL AK062667 [ cTG ACACACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGT CGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCG TCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC TTGTGCAGTTTTGCT ACTGCTACT GCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTATCTCTTCAATGGGAATCTTGTTGTTATGTTGCTTTGTGTTACACATAAAAGAAA ]
[+] EMBL AU161851 [ ACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCNGCGGGGTGCAACCCGT CGGCGCTGTCGCCGTGCATNAGCNCGATNATGCTGGGCGCGGC ]
[+] EMBL AU033261 [ AGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGNCGCGNCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAA CCGTNCGGCGCTGTCG CGTGCATGAGCGCGATCATGCTGGGCGCGNCG ]
[+] EMBL AU161808 [ ACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGT CGGCGCTGTCGCCGTGCATNANCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGnt ]
[+] EMBL AU070610 [ ACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCANGTCGAGCAACACATCATACAATGGCGGGCATCAACNGCAAGGGCGGCGCGGCGGCGGCGTACG GGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCGTT CGGCGCTGTCGCNTNGCATna ]
[+] EMBL AU161820 [ ACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGT NGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCG CTGGCTGCTGCNTNCAGt ]
[+] EMBL AU161762 [ ACACCATCCCGCTCTCTCCATCGNTCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGTCCGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCNGGTTGCTGCTTGCA NTGCGGGCGCAn ]
[+] EMBL AU070630 [ ACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGT CGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCNNGCTGCTGCGTGCAGCTGCGGGCGCA CAGCCGTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGC ]
[+] EMBL OSS4229A [ ACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACG GGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGTNNGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCG CNGGCTGCTGCGTGCAG TGCGGGCGCA NAGCCGTGCCTGTn ]
[+] EMBL AU161799 [ ACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTNCGGCGGGCGCGGCGGATGCGGCGGGGTTCAA CCGTGCGGCG ]
[+] EMBL AU069813 [ CATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGT CGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGA CCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCG TCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC TTGTGCAGTTTTGCT ACTGCTACT GCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTC ]
[+] EMBL AU161817 [ GCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCGGCGGGGTGCAACCCGT CGGCGCTGTCGCCGTGCATGANCNCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCA NTGCGGGCNCA NAGCCGTNCCTGTCCCAGTACGNGNGCAACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAG GC CCGTTAAAGGC TGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGCTTTGTCCAGTTTTGNTAATTGCTACTNGCTAGTAAATAAACG ]
[+] EMBL AU223296 [ CGTACNCGGTGGCGCTGTTGCTTNCGGCGGGCGCGGCGGAT CGGCGGGGTGCAACCCGT CGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCANCCGTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCG TCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC TTGTGCAGTTTTGCT ACTGCTACT GCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTNTGCTATGCTTGCTATCTCTTCAAaaaaa ]
[+] EMBL AU033262 [ gnACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCG TCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC TTGTGCAGTTTTGCT ACTGCTACT GCTAGTAAATAAACGTGGTTNCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTATCTCTTCAATGGGAATCTTGTTGTTATGTTGCTTTGT NTACACATAAAAGAAAAGAGTTCAGCAANAA]
[+] EMBL AU223290 [ CANCTGNTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC TTGTGCAGTTTTGCT ACTGCTACT GCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTATCTCTTCAAaaaaa ]
consensusID : consensus_15098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 489 fasta sequence
[NCATCATACAATGNCGGCCATCCAACCGCAAGGGCGNCGCGGCGGCGGCNTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGNCGGATGCGGCGGGGTGCAACCCGTNCGGC-CTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGC-CGCAGCGCGCCGTCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGCTTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTA-------AAAAAAAAAAAAAAAAAA]
[+] EMBL AU161852 [NCATCATACAATGNCGGCCATCCAACCGCAAGGGCGNCGCGGCGGCGGCNTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGNCGGATGCGGCGGGGTGCAACCCGTNCGGC CTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCTNTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGC CGCAGCGCGCCGTCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGCTTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTA AAAAAAAAAAAAAAAAAA]
[+] EMBL AU097368 [ CGGC GGGTGCAACCCGT CGGC NTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCC GCTGCTGCGTGCAG TGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAG NGCAGCGCGCCGTCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGCTTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTATCTCTTCAAAAAAAAAAAAAA ]
[+] EMBL AU223365 [ GGTGCAACCCGTN GGCGCTGTCNCCGTGCATGAGCGCGATCATGCTGGGCGCGGCGCCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCGTCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGCTTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTGCTA TCAAAAAAAAAA ]
consensusID : consensus_15098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence
[ACACTGACACACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCGTCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGCTTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTG]
[+] EMBL AK062493 [ACACTGACACACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCTAGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATCAACCGCAAGGGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTGCCAGTACGCGCGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCGTCAAGGCGTGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGCTTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAGCCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATGAAGTTCTGCTATGCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15098#0 ANCNACNTGACACACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCT 60
consensus_15098#2 ---ACACTGACACACAGTCACACACCATCCCGCTCTCTCCATCGATCTCCATCACAAGCT 57
consensus_15098#1 ------------------------------------------------------------
consensus_15098#0 AGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATC-AACCGCAAG 119
consensus_15098#2 AGCAAAACCAAGAGCCAAGTCGAGCAACACATCATACAATGGCGGGCATC-AACCGCAAG 116
consensus_15098#1 ----------------------------NCATCATACAATGNCGGCCATCCAACCGCAAG 32
************ *** **** *********
consensus_15098#0 GGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGGCGGATGCG 179
consensus_15098#2 GGCGGCGCGGCGGCGGCGTACGCGGTGGCGCTGT-------------------------- 150
consensus_15098#1 GGCGNCGCGGCGGCGGCNTACGCGGTGGCGCTGTTGCTTGCGGCGGGCGCGNCGGATGCG 92
**** ************ ****************
consensus_15098#0 GCGGGGTGCAACCCGTCGGCGCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCG 239
consensus_15098#2 ------------------------------------------------------------
consensus_15098#1 GCGGGGTGCAACCCGTNCGGCCTGTCGCCGTGCATGAGCGCGATCATGCTGGGCGCGGCG 152
consensus_15098#0 CCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCG 299
consensus_15098#2 -------------------------------------------------GCCAGTACGCG 161
consensus_15098#1 CCGTCGCCCGGCTGCTGCGTGCAGCTGCGGGCGCAGCAGCCGTGCCTGTGCCAGTACGCG 212
***********
consensus_15098#0 CGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCGTCAAGGCG 359
consensus_15098#2 CGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGCGCGCAGCGCGCCGTCAAGGCG 221
consensus_15098#1 CGCGACCCATCCTACCGCAGCTACGTCACGAGCCCCAGC-CGCAGCGCGCCGTCAAGGCG 271
*************************************** ********************
consensus_15098#0 TGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC 419
consensus_15098#2 TGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC 281
consensus_15098#1 TGCAACGTCAAGGCCAACTGCTAAATTAAACTGCTGCTACTACTCTACTAGTACTAATGC 331
************************************************************
consensus_15098#0 TTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAG 479
consensus_15098#2 TTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAG 341
consensus_15098#1 TTGTGCAGTTTTGCTACTGCTACTGCTAGTAAATAAACGTGGTTGCCGCTAGCTAGGCAG 391
************************************************************
consensus_15098#0 CCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATG 539
consensus_15098#2 CCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATG 401
consensus_15098#1 CCATGATCATTGTGTGCATGTTTCAGTTCACTGTCACGTATGTATGGGGCTATATGAATG 451
************************************************************
consensus_15098#0 AAGTTCTGCTATGCTTGCTATCTCTTCAATGGGAATCTTGTTGTTATGTTGCTTTGTGTT 599
consensus_15098#2 AAGTTCTGCTATGCTTG------------------------------------------- 418
consensus_15098#1 AAGTTCTGCTATGCTTGCTAAAAAAAAAAAAAAAAAAA---------------------- 489
*****************
consensus_15098#0 ACACATAAAAGAAAAGAGTTCAGCAANAA 628
consensus_15098#2 -----------------------------
consensus_15098#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||