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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1518 fasta sequence
[CACCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA-GGAAAGCATTTCTGCTTCTA-GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG--AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATTCTTCTTAAAAAAAAAAAAA]
[+] EMBL AK071333 [CACCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATT ]
[+] EMBL CB645385 [ CCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGGGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCACGCTGC ]
[+] EMBL CB671423 [ CCAATCCCCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCGAAAAGC AATCC AGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTG ]
[+] EMBL OSC677 [ TCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCNCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGGGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATTACAGAGAGTTACAGAGGGAAAGCATTTTTGTTTCTANGGNGCTATGA ]
[+] EMBL AU197699 [ TCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGG ]
[+] EMBL CB682821 [ TTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGC ]
[+] EMBL D42624 [ CCTCCTTCCTCACCATGGCGCT CGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTNCNNCCCTCCTCCTCCCC NCNNNGTCGA GCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGA GGCGGTGGCTTCCG AAGAACTACGACCACAT CCCAAGCAGTTCCGCGA GAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAG CCTGCTCAGATCGAAATGTTTA ]
[+] EMBL AU174881 [ TCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTAT ]
[+] EMBL CF312267 [ TGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAA TATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGC ]
[-] EMBL CB660165 [ ACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGAGGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGAGGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGtttt ]
[+] EMBL D43589 [ AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGGTGGTTCCTTCAAACCA ]
[-] EMBL CB671424 [ TATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGAAGGTCCAGTAATCCATGTGACCAAGTATTCTTCTCATTAAAAGGAAA ]
[+] EMBL AA754475 [ acaTTCCTCNNAGGTCCCCCGTACTTCCGTGCGCANGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCANCAGCTGGAGCTGGGCGATGGTCAACTCCCAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATNATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAANAAATCCTGTCNNGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACCATGAATATGTAGTTTATGCTGCCTTCCTGCCNAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTNATCCAGTAATCCATGTGACCAAG ]
[+] EMBL AU057674 [ GTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATTCTTCTTAAAAAAAAAAA ]
[+] EMBL AU197700 [ GTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCGTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATTNTTNTTAAAAAAAAAAAAA]
consensusID : consensus_15099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1391 fasta sequence
[GGGGAATAAGCTTGGGGCCGCTCCAACATCAGAATGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGCTACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCTTGGGCGTCNAGGGTTAAANAAGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTCCCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAGGAGGTAGTTTATGCTGCCTTCCTGCCAAAAAAAATAAAAAGA]
[+] EMBL BI305258 [GGGGAATAAGCTTGGGGCCGCTCCAACATCAGAATGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTNTATCAATCGAAGCANATCCCAAGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTT ]
[+] EMBL CB660166 [ ATTACAAGAATGGGCCTCGATTCCTTTATGGCTTAAGCCCTGGTCAGATCGAAATGTGTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGCTACACAGGAGAGCATTTCTGCTTCGAGGAGCTATGATGAATTTGGCATGGGCAACTTGTCCGGAATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCACGGCAGGGAGAGGATATAAAATAATGATAAGGTCATCTCCATATCTGCCATCATTGCTATTGGACTCTCGAATTGTATTCCTTGGAATGCC ]
[+] EMBL AA753234 [ cggttgagCAGAGGAAA CATTTCTGCTTCTANGAACTATGATTTTTTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCANGTNACAGCNNGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATATAANAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAACTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCNATCGAAGCAAATCCAAGGTCTACACNATCNATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCTTGGGCGTCNAGGGTTAAANAAG ]
[-] EMBL CB645386 [ ATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTCCCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAGGAGGTAGTTTATGCTGCCTTCCTGCCAAAAAAAATAAAAAGA]
consensusID : consensus_15099#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence
[CCAATCGGGAAGCGCCCACAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGACAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCAGTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAGTATTCTTCTTATTCATGTGTTGGCTCTGCATGATGCACACCCTGCTTAATCGTGACGGTGAAACCCAGACGAACTCATGCATGCCGTGCGTTTTTTTGTGTTTGACTGTATACATATGGTAGTTGAATCAAATAAAAA]
[+] EMBL BI813134 [CCAATCGGGAAGCGCCCACAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGACAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCAGTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAGTATTCTTCTTATTCATGTGTTGGCTCTGCATGATGCACACCCTGCTTAATCGTGACGGTGAAACCCAGACGAACTCATGCATGCCGTGCGTTTTTTTGTGTTTGACTGTATACATATGGTAGTTGAATCAAATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15099#0 CACCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGC 60
consensus_15099#1 -----------------------------------------------------GGGGAAT 7
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 TGCCCCGCCGCTGCCTCGCCGTCGCCA-GCCAAGAGCACCTTCCCGCCCTCCTCCTCCCC 119
consensus_15099#1 AAGCTTGGGGCCGCTCCAACATCAGAATGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCC 67
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGA 179
consensus_15099#1 GCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGA 127
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 CGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCT 239
consensus_15099#1 CGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCT 187
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 CAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCC 299
consensus_15099#1 CAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCC 247
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 TGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGT 359
consensus_15099#1 TGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGC 307
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 TACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTC 419
consensus_15099#1 TACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTC 367
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 CGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCAT 479
consensus_15099#1 CGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCAT 427
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATT 539
consensus_15099#1 GGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATT 487
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCT 599
consensus_15099#1 GCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCT 547
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 TATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTA 659
consensus_15099#1 TATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTA 607
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 TATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGC 719
consensus_15099#1 TATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGC 667
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 ATTTGCAATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAG 779
consensus_15099#1 ATTTGCAATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAG 727
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 CATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGT 839
consensus_15099#1 CATGGCATATGGTCAGGCTGCAATGCTTCTGTCCTTGGGCGTCNAGGGTTAAANAAGAGT 787
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGC 899
consensus_15099#1 GCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGC 847
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 TATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACT 959
consensus_15099#1 TATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTCCCTTGAACT 907
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAG 1019
consensus_15099#1 GTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAG 967
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTT 1079
consensus_15099#1 GTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTT 1027
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCG 1139
consensus_15099#1 GGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCG 1087
consensus_15099#2 ------------------------------------------------------------
consensus_15099#0 GCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAG 1199
consensus_15099#1 GCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAG 1147
consensus_15099#2 CCAATCGGG-AAGCGCCCA-CAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAG 58
******** ********* ****************************************
consensus_15099#0 ATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTG 1259
consensus_15099#1 ATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTG 1207
consensus_15099#2 ATAGACTAGAACGTCAGATCAAA-CCATACACTAGCTTAATATCGACGATGATACGCGTG 117
*********************** ************************************
consensus_15099#0 GTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGG 1319
consensus_15099#1 GTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGG 1267
consensus_15099#2 GTTGTCCTATTCAGA-CAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGG 176
*************** ********************************************
consensus_15099#0 GTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTG 1379
consensus_15099#1 GTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTG 1327
consensus_15099#2 GTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTG 236
************************************************************
consensus_15099#0 GGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTA 1439
consensus_15099#1 GGTCATCTATGAATACGATGAGGAGGTAGTTTATGCTGCCTTCCTGCCAAAAAAAATAAA 1387
consensus_15099#2 GGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTA 296
********************* * ************************* * *
consensus_15099#0 TTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATT 1499
consensus_15099#1 AAGA-------------------------------------------------------- 1391
consensus_15099#2 TTTTTCAGATAGAATTCAGTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAGTATTC 356
consensus_15099#0 CTTCTTAAAAAAAAAAAAA----------------------------------------- 1518
consensus_15099#1 ------------------------------------------------------------
consensus_15099#2 TTCTTATTCATGTGTTGGCTCTGCATGATGCACACCCTGCTTAATCGTGACGGTGAAACC 416
consensus_15099#0 ------------------------------------------------------------
consensus_15099#1 ------------------------------------------------------------
consensus_15099#2 CAGACGAACTCATGCATGCCGTGCGTTTTTTTGTGTTTGACTGTATACATATGGTAGTTG 476
consensus_15099#0 -------------
consensus_15099#1 -------------
consensus_15099#2 AATCAAATAAAAA 489
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||