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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1614 fasta sequence
[TAAAAAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCATGAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGCCGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG-GAC-AG-CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC-TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG-AAAAGAT-CTACACA-AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC---GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAAAAAAAAAAAA]
[+] EMBL AK101604 [TAAAAAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCATGAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGCCGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTG ]
[+] EMBL CB643745 [ AAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCATGAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCTAGGGTGGCGCTGGCGGGGATAATG ]
[+] EMBL AU093673 [ AGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCANAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACnc ]
[+] EMBL AU095040 [ GCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGTCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCC ]
[+] EMBL CB667105 [ GGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGCCGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTA ]
[-] EMBL CB667106 [ ATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATTTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTTTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT TTACACA AACAGTGTGGCGCCCATTATGAACGATGAGACCCCTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTTTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTTGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATTTGAGAATATTGCCTGCTAATCAAA ]
[+] EMBL CF305765 [ ACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCTTTTGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTG ]
[-] EMBL CA763630 [ tgattaggtGAGCGACGAGACAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTNTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAAAAAAAAAAAA]
[+] EMBL AU093714 [ GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTNCTTCCTGATGACATCCGTCAAGNATTGCNCCGTAATTGTTNAATnntn ]
[+] EMBL CA767257 [ GGCCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGGT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAA ]
[+] EMBL BI808350 [ GGCCACTTGCAATGCACC TGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACC TACCGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCCATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTC AAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCAC AATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAACCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGC ATATACTGTCTGCTTCTCTCCTAAAAA ]
[+] EMBL BI809353 [ TGGTGTCACTATGGTT GTATCCACGAGCGTTCGGCCCGAGTAAAAGATGCTACACACAACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCGAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGATGCTTCAACCGGGCACAAGCTTGGATCCCCAATAGAATATTTGTAATCTGTGTAATGTGTAAACCCAATTTTCCTGCTCTTATTTTCATTTTGGTACTCTTGCCAGAACCTGAGAATAT ]
[+] EMBL BI808764 [ GAGCGTTCGGCCCGAG AAAAGAT CTACAC AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTC AAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAACCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAAAAAAA ]
[+] EMBL BI798461 [ GCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCAC AATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTCCCTGCTAATCAAATTACTGAAGAAAGCAAaaaa ]
[+] EMBL BI799326 [ GCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCAC AGCTTGGATCACCAATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGC AGAATCTGAGAATATTGCCTGCTAATC AATTACTGAAGAAAGCAAaaaa ]
[+] EMBL AU093674 [ CCTTCAGTCAATCAAGAGGCTTATGACCCNTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGNAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATAaaaaa ]
[+] EMBL AU093715 [ TGCCAGCGACGTTATCCTGCTNTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGNAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAANATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAA ]
consensusID : consensus_15106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[GACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCNTGAAGCGTGATTATTTAGCAGCNNTGGACCANTNCNTTCAAGCTGGCCATTGGCAATGCACCATGNCCTATTTGGTGGNCACTATGGTTGGTNTCCTCGAGCGTTTCGGCCCGAGAAAAAGATNTACACAANACAGTNTGGCGCACATTTTGAACGATTGAGNCCNCTCGCAAGTNCCTTCAGTCAATCAAGNGGCTTTTGNCCCTTTGCCAGCGNCGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGNCCTGCAGGCCCTTTTNTCAGNGGNGAAAGATCCNGGAANCCCTCCTNGCGNGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCACAAGCTTGGATCNCAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATTTGAGAATATTGCCTGCTNATCAAATTNCTGNNGNANGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU030257 [GACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCNTGAAGCGTGATTATTTAGCAGCNNTGGACCANTNCNTTCAAGCTGGCCATTGGCAATGCACCATGNCCTATTTGGTGGNCACTATGGTTGGTNTCCTCGAGCGTTTCGGCCCGAGAAAAAGATNTACACAANACAGTNTGGCGCACATTTTGAACGATTGAGNCCNCTCGCAAGTNCCTTCAGTCAATCAAGNGGCTTTTGNCCCTTTGCCAGCGNCGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGNCCTGCAGGCCCTTTTNTCAGNGGNGAAAGATCCNGGAANCCCTCCTNGCGNGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCACAAGCTTGGATCNCAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATTTGAGAATATTGCCTGCTNATCAAATTNCTGNNGNANGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15106#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence
[CAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGCCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAGAAAAGATCTACACAAACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTGGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCCCAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCGGCTAATCAAATTACTGAAGAAAGCAAAAAAAAAAAAAAA]
[-] EMBL CB643746 [CAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGCCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAGAAAAGATCTACACAAACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTGGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCCCAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCGGCTAATCAAATTACTGAAGAAAGCAAAAAAAAAAAAAAA]
consensusID : consensus_15106#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[AAGAGGCTTATGACCCTTTGCCACGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGGATGCTTCAACGCACACAGCTTGGATCNCCAATAGAATATGTTGTAATCTGTGGTAATGTGTAAACCCAATGTGTTGCCTGCTGCTGTATTGTTGCATGTTGTTGGTGACTCCTTGGCACAGAACCTGAGAATATTGCCTGGCTAATCCAAATTACTGAAGAAACGCCATATACTGTCTGCTTCTCTCCTAGAAGAGTTCACTGGCTAAGGTTCCATGTGTAAGTTTGGTTGAATAAAACCCTTCTAATGTCTTTGCTGTGCCAAAAAAAAAA]
[+] EMBL BM421837 [AAGAGGCTTATGACCCTTTGCCACGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGGATGCTTCAACGCACACAGCTTGGATCNCCAATAGAATATGTTGTAATCTGTGGTAATGTGTAAACCCAATGTGTTGCCTGCTGCTGTATTGTTGCATGTTGTTGGTGACTCCTTGGCACAGAACCTGAGAATATTGCCTGGCTAATCCAAATTACTGAAGAAACGCCATATACTGTCTGCTTCTCTCCTAGAAGAGTTCACTGGCTAAGGTTCCATGTGTAAGTTTGGTTGAATAAAACCCTTCTAATGTCTTTGCTGTGCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 TAAAAAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGC 60
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGAT 120
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 CTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAG 180
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 AGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAG 240
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 CACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCC 300
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAAC 360
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 TCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCG 420
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 CAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCAT 480
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGAC 540
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGAC 600
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGC 660
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 AAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGC 720
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGC 780
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 CGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTT 840
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGG 900
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 AACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAGGACAGCAAAGGGCAAGTCGATG 960
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ------------------------------------------------------------
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 GTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAG 1020
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ---------------GACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCNTGAAG 45
consensus_15106#2 ------------------------CAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAG 36
consensus_15106#0 CAGGTTCTTCCTGATGACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAG 1080
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 CGTGATTATTTAGCAGCNNTGGACCANTNCNTTCAAGCTGGCCATTGGCAATGCACCATG 105
consensus_15106#2 CGTGATTATTTAGCAGCAATGGACCAATACAT-CAAGCTGGCCATTGGCAATGCACCATG 95
consensus_15106#0 CGTGATTATTTAGCAGCAATGGACCAATACAT-CAAGCTGGCCATTGGCAATGCACCATG 1139
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 NCCTATTTGGTGGNCACTATGGTTGGTNTCCTCGAGCGTTTCGGCCCGAGAAAAAGATNT 165
consensus_15106#2 CCCTATT-GGTG-TCACTATGGTTGGTATCCACGAGCGTT-CGGCCCGAGAAAA-GATCT 151
consensus_15106#0 GCCTATT-GGTG-TCACTATGGTTGGTATCCACGAGCGTT-CGGCCCGAGAAAA-GATCT 1195
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 ACACAANACAGTNTGGCGCACATTTTGAACGATTGAGNCCNCTCGCAAGTNCCTTCAGTC 225
consensus_15106#2 ACACAAA-CAGTGTGGCGCACATTATGAACGAT-GAGACCACTCGCAAGTACCTTCAGTC 209
consensus_15106#0 ACACAAA-CAGTGTGGCGCACATTATGAACGAT-GAGACCACTCGCAAGTACCTTCAGTC 1253
consensus_15106#3 ------------------------------------------------------------
consensus_15106#1 AATCAAGNGGCTTTTGNCCCTTTGCCAGCGNCGTTATCCTGCTCTGCCCTCAAAATCGGT 285
consensus_15106#2 AATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGT 269
consensus_15106#0 AATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGT 1313
consensus_15106#3 ----AAGAGGCTTATGACCCTTTGCCA-CGACGTTATCCTGCTCTGCCCTCAAAATCGGT 55
*** ***** ** ********** ** *****************************
consensus_15106#1 GGAGTTCAACAGCCTGGCAAATGGGAGTGNCCTGCAGGCCCTTTTNTCAGNGGNGAAAGA 345
consensus_15106#2 GGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGA 329
consensus_15106#0 GGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGA 1373
consensus_15106#3 GGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGA 115
***************************** *************** **** ** ******
consensus_15106#1 TCCNGGAANCCCTCCTNGCGNGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTG-AT 404
consensus_15106#2 TCCAGGAAACCCTCCTAGCGAGGATAGGCTTGGACTCATGCCAGCGTCAAAAGAGTG-AT 388
consensus_15106#0 TCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTG-AT 1432
consensus_15106#3 TCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGGAT 175
*** **** ******* *** ********** **************** ******** **
consensus_15106#1 GCTTCAACGCACA-AGCTTGGATCNCAAATAGAATAT-TTGTAATCTGTG-TAATGTGTA 461
consensus_15106#2 GCTTCAACGCCCA-AGCTTGGATCACAAATAGAATAT-TTGTAATCTGTG-TAATGTGTA 445
consensus_15106#0 GCTTCAACGCACA-AGCTTGGATCACAAATAGAATAT-TTGTAATCTGTG-TAATGTGTA 1489
consensus_15106#3 GCTTCAACGCACACAGCTTGGATCNCCAATAGAATATGTTGTAATCTGTGGTAATGTGTA 235
********** ** ********** * ********** ************ *********
consensus_15106#1 AACCAAAT---TTTCCTGCTCTTATTTTCATTTTTGT--------ACTCTT--GCA-AGA 507
consensus_15106#2 AACCAAAT---TTTCCTGCTCTTATTTTCATTTTTGT--------ACTCTT--GCA-AGA 491
consensus_15106#0 AACCAAAT---TTTCCTGCTCTTATTTTCATTTTTGT--------ACTCTT--GCA-AGA 1535
consensus_15106#3 AACCCAATGTGTTGCCTGCTGCTGTATTGTTGCATGTTGTTGGTGACTCCTTGGCACAGA 295
**** *** ** ****** * * ** * *** **** * *** ***
consensus_15106#1 ATTTGAGAATATTGCCTG-CTNATC-AAATTNCTGNNGNAN-GCAAAAAAAAAAAAAAAA 564
consensus_15106#2 ATCTGAGAATATTGCCGG-CTAATC-AAATTACTGAAGAAA-GCAAAAAAAAAAAAAAA- 547
consensus_15106#0 ATCTGAGAATATTGCCTG-CTAATC-AAATTACTGAAGAAA-GCAATATACTGTCTGCTT 1592
consensus_15106#3 ACCTGAGAATATTGCCTGGCTAATCCAAATTACTGAAGAAACGCCATATACTGTCTGCTT 355
* ************* * ** *** ***** *** * * ** * * *
consensus_15106#1 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 588
consensus_15106#2 ------------------------------------------------------------
consensus_15106#0 CTCTCCTAAAAAAAAAAAAAAA-------------------------------------- 1614
consensus_15106#3 CTCTCCTAGAAGAGTTCACTGGCTAAGGTTCCATGTGTAAGTTTGGTTGAATAAAACCCT 415
consensus_15106#1 ------------------------------
consensus_15106#2 ------------------------------
consensus_15106#0 ------------------------------
consensus_15106#3 TCTAATGTCTTTGCTGTGCCAAAAAAAAAA 445
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||