These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15110#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1611 fasta sequence [CTCTCCTCTCCTCTTCCTCCTCGCCTCGCGTCGCCTCCTCCGCGGCGTACCCTAACCCTAGCCTCGCCTTCCCCCCAATGGCGCGTCACGCGTGAGGAGCCGCCGCCGGAGCAGCAGGAGCGGGAGCGGGAGGGAGGGAGGAGGAGATGTACAAGCAGGGGGGAGGAGGGGGAGGGGGAGGGGGAGGCGGAGGCGGCGCGGGGCTGGACCGGAAGCGAATCAGCGACGCGCTCGACAAGCACCTCGAGAAGGCGGTCGCGGCGGCGGCGGCGGCCGCGTCGCCCTCGACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCTAAGAGGGAATGAATTCTTCTGTGAGGTTGATGATGATTATATACAAGATGACTTCAACCTCTGTGGGCTTAGCAGTCAAGTTCCATATTATGATTATGCTCTTGATCTCATTTTAGATATCGAATCTTCTCACGGTGACATGTTCACCGAAGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAAAAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGTTGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTT-GCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTGCCTTGATTAAAATGGTGTGCTGCCCCAGGCA-TTGGTTTATTTTATCTTGTAAGTTGTAAGCAAGGTTCATGCCTGCAATTGGAAGGCGAGGGATGACAGGGGCAGGCC-GGTATTCTGGTCCATATTGATCTGGTATTCTGTTGCTTGCTCGGAGTATCCACACAATTCATCATCATGGTGGATGGAAGTGATGTTCAGTGCTCGGTATTCTGGTAATTCTAGTAGAATTTTATTTTAGAATTATTGTAATGGTTTTAGGCGCCTTCCATTTTTCAATCCTCGGCCTTTTGAACTGCTAAAATAAGAGTAGAAGTGTTATAATCATT] [+] EMBL AK121850 [CTCTCCTCTCCTCTTCCTCCTCGCCTCGCGTCGCCTCCTCCGCGGCGTACCCTAACCCTAGCCTCGCCTTCCCCCCAATGGCGCGTCACGCGTGAGGAGCCGCCGCCGGAGCAGCAGGAGCGGGAGCGGGAGGGAGGGAGGAGGAGATGTACAAGCAGGGGGGAGGAGGGGGAGGGGGAGGGGGAGGCGGAGGCGGCGCGGGGCTGGACCGGAAGCGAATCAGCGACGCGCTCGACAAGCACCTCGAGAAGGCGGTCGCGGCGGCGGCGGCGGCCGCGTCGCCCTCGACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCTAAGAGGGAATGAATTCTTCTGTGAGGTTGATGATGATTATATACAAGATGACTTCAACCTCTGTGGGCTTAGCAGTCAAGTTCCATATTATGATTATGCTCTTGATCTCATTTTAGATATCGAATCTTCTCACGGTGACATGTTCACCGAAGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAAAAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGTTGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTT GCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTGCCTTGATTAAAATGGTGTGCTGCCCCAGGCA TTGGTTTATTTTATCTTGTAAGTTGTAAGCAAGGTTCATGCCTGCAATTGGAAGGCGAGGGATGACAGGGGCAGGCC GGTATTCTGGTCCATATTGATCTGGTATTCTGTTGCTTGCTCGGAGTATCCACACAATTCATCATCATGGTGGATGGAAGTGATGTTCAGTGCTCGGTATTCTGGTAATTCTAGTAGAATTTTATTTTAGAATTATTGTAATGGTTTTAGGCGCCTTCCATTTTTCAATCCTCGGCCTTTTGAACTGCTAAAATAAGAGTAGAAGTGTTATAATCATT] [+] EMBL BU673189 [ aataGCTGCGGTTGCGTCGCCCTCGACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCT ] [+] EMBL BU672867 [ ttGGGCG GTCG CTCGACGTCGAGGGGGTCGG GGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTG CGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCT ] [+] EMBL BU673777 [ CGACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCT ] [+] EMBL BU673314 [ GACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCT ] [+] EMBL CB965028 [ GACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCT ] [+] EMBL CB965192 [ GACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCT ] [+] EMBL AY224528 [ ACGTCGAGGGGGTCGGCGGGGGGGAGGGGCGGTGGTGACCACCAGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTCTGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCTAAGAGGGAATGAATTCTTCTGTGAGGTTGATGATGATTATATACAAGATGACTTCAACCTCTGTGGGCTTAGCAGTCAAGTTCCATATTATGATTATGCTCTTGATCTCATTTTAGATATCGAATCTTCTCACGGTGACATGTTCACCGAAGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAAAAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGTTGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCA ] [-] EMBL CB667866 [ ACTGCAGTCTAAGAGGGAATGAATTCTTCTGTGAGGTTGATGATGATTATATACAAGATGACTTCAACCTCTGTGGGCTTAGCAGTCAAGTTCCATATTATGATTATGCTCTTGATCTCATTTTAGATATCGAATCTTCTCACGGTGACATGTTCACCGAAGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAAAAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGTTGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTT GCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGT ] [-] EMBL CB673754 [ tagttGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAAAAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGTTGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTT GCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTGCCTTGATTAAAAaaaaga ] [+] EMBL BI800945 [ ACGACCACCTCAACCCTCAGAA CCTCGCAGCG TACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACA CCTGGTGGACTACTGCAAGAGTGGGGGGCATTTCGCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCT CCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTACCCGATGTTGTTTGT CCTTGATTAAAATGGTGTGCTGCCCCAGGCATTTGGTTTAGTTTATCTTGTAAGTTGTAAGCAAGGTTCATGCCTGCAATTGGAAGGCGAGGGATGACAGGGGCAGGCCGGGTATTCTGGTCCAaaaaaaaaa ] [+] EMBL CB682683 [ TGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTT GCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTGCCTTGATTAAAATGGTGTGCTGCCCCAGGCA TTGGTTTATTTTATCTTGTAAGTTGTAAGCAAGGTTCATGCCTGCAATTGGAAGGCGAGGGATGACAGGGGCAGGCC GGTATTCTGGTCCATATTGATCTGG ] consensusID : consensus_15110#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 768 fasta sequence [TCTCTGGAAGAAAATAGAATTCCTTTGGATTTCCAGCATTACTATATTCTAATAGTTTTGCCCTAATTCGCTGATAGGAGTGGTTGGCAAATGCTTTGACAAGTTTTAACAGGCAGACATATACAGTTGTTAGGACGACTAATATCAATACTAAGGACATAAACAATTCAGTAATCTTTAACGCATGGTCTTTTGCTTTCTTAGTGTTCTCAGTGCCAATATATATTATCGCTTATTAGATGAAGTCCACACACTCTCATCTGTGTTACATTGATATCATAGTTACATAGAACTGCCATTTTGTTGTTATATTCTGCTGTTTTCTTGACCATGTTCAGACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTGCCTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CB649444 [TCTCTGGAAGAAAATAGAATTCCTTTGGATTTCCAGCATTACTATATTCTAATAGTTTTGCCCTAATTCGCTGATAGGAGTGGTTGGCAAATGCTTTGACAAGTTTTAACAGGCAGACATATACAGTTGTTAGGACGACTAATATCAATACTAAGGACATAAACAATTCAGTAATCTTTAACGCATGGTCTTTTGCTTTCTTAGTGTTCTCAGTGCCAATATATATTATCGCTTATTAGATGAAGTCCACACACTCTCATCTGTGTTACATTGATATCATAGTTACATAGAACTGCCATTTTGTTGTTATATTCTGCTGTTTTCTTGACCATGTTCAGACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCCCATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTG ] [-] EMBL CA923312 [ CAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACGGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTGCCTAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL OSR14341A [ AGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTTGTTTGTGCCTTGATTAAAAAAAAAAAAAAAAAA ] consensusID : consensus_15110#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [AGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAAAAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGTTGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTCGTTTGTGCCTTGATAAAAAAACATAAATGAAGAAAAAAAAAACTCGAGGGGGGCCG] [+] EMBL CA753272 [AGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAAAAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGTTGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAGCCGATGTCGTTTGTGCCTTGATAAAAAAACATAAATGAAGAAAAAAAAAACTCGAGGGGGGCCG] consensusID : consensus_15110#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 706 fasta sequence [CCTTTGGATTTCCAGCATTANTATATTCTAATAGTTTTGCCCTAATTCGCTGATAGGAGTGGTTGGCAAATGCTTTGACAAGTTTTAACAGGCAGACATATACAGTTGTTAGGACGACTAATATCAATACTAAGGACATAAACAATTCAGTAATCTTTAACGCATGGTCTTTTGCTTTCTTAGTGTTCTCAGTGCCAATATATATTATCGCTTATTAGATGAAGTCCACACACTCTCATCTGTGTTACATTGATATCATAGTTACATAGAACTGCCATTTTGTTGTTATATTCTGCTGTTTTCTTGACCATGTTCAGACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTTTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCCCCAAAGNAACCCCTCCCCCTCCCCCTCCTCCCCCCTGCTTGTACATCTCCTCCTCCCTCCCTCCCGCTCCCGCTCCTGCTGCTCCGGCGGCGGCTCCTCACGCGTGACGCGCCATTGGGGGGAAGGCGAGGCTAGGGTTAGGGTACGCCGCGGAGGAGGCGACGC] [-] EMBL CB649443 [CCTTTGGATTTCCAGCATTANTATATTCTAATAGTTTTGCCCTAATTCGCTGATAGGAGTGGTTGGCAAATGCTTTGACAAGTTTTAACAGGCAGACATATACAGTTGTTAGGACGACTAATATCAATACTAAGGACATAAACAATTCAGTAATCTTTAACGCATGGTCTTTTGCTTTCTTAGTGTTCTCAGTGCCAATATATATTATCGCTTATTAGATGAAGTCCACACACTCTCATCTGTGTTACATTGATATCATAGTTACATAGAACTGCCATTTTGTTGTTATATTCTGCTGTTTTCTTGACCATGTTCAGACATCGACGGCGCATACTTTGGGACAACATTCCCGCACCTGTTTTTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGATGGTCTCTATCATGCCCCCAAAGNAACCCCTCCCCCTCCCCCTCCTCCCCCCTGCTTGTACATCTCCTCCTCCCTCCCTCCCGCTCCCGCTCCTGCTGCTCCGGCGGCGGCTCCTCACGCGTGACGCGCCATTGGGGGGAAGGCGAGGCTAGGGTTAGGGTACGCCGCGGAGGAGGCGACGC] [-] EMBL CB667865 [ CTCCTCCCCCCTGCTTGTACATCTCCTCCTCCCTCCCTCCCGCTCCCGCTCCTGCTGCTCCGGCGGCGGCTCCTCACGCGTGACGCGCCATTGGGGGGAAGGCGAGGCTAGGGTTAGGGTACGCCGCGGAGGAG ] consensusID : consensus_15110#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 297 fasta sequence [CCTGGTGGACTACTGCAANAGTGGGGGGCATTTGCCNANCGATGGTCTCTATCATGCCGCCACTGCCACCTCCAAAGGCCTGCCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACNTCAANCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTANCGAATNTGTGGGANCCCGTAATTCTAAANTANCCGNTGTTGTTTGTGCCTTGATTAAAATGGTGTGCTGCCCCAGGCATTGGTTTAAAAAAAAAAAAAAAAAAAA] [+] EMBL C97709 [CCTGGTGGACTACTGCAANAGTGGGGGGCATTTGCCNANCGATGGTCTCTATCATGCCGCCACTGCCACCTCCAAAGGCCTGCCCGCATGCATGCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACNTCAANCGATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTANCGAATNTGTGGGANCCCGTAATTCTAAANTANCCGNTGTTGTTTGTGCCTTGATTAAAATGGTGTGCTGCCCCAGGCATTGGTTTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15110#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence [ACTAAGGGAATACGCTGCGGCGCGTCGCCCTCGACGTCGACGGGGGTCGGCGGGGGGGACGGGGCGGTGGTGACCACCCACGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGAC] [+] EMBL CB964654 [ACTAAGGGAATACGCTGCGGCGCGTCGCCCTCGACGTCGACGGGGGTCGGCGGGGGGGACGGGGCGGTGGTGACCACCCACGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAAGGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 TCTCTGGAAGAAAATAGAATTCCTTTGGATTTCCAGCATTACTATATTCTAATAGTTTTG 60 consensus_15110#3 ---------------------CCTTTGGATTTCCAGCATTANTATATTCTAATAGTTTTG 39 consensus_15110#0 ------------------------------------------------------------ consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 -------AGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCTGATTC 53 consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 CCCTAATTCGCTGATAGGAGTGGTTGGCAAATGCTTTGACAAGTTTTAACAGGCAGACAT 120 consensus_15110#3 CCCTAATTCGCTGATAGGAGTGGTTGGCAAATGCTTTGACAAGTTTTAACAGGCAGACAT 99 consensus_15110#0 ------------------------------------------------------------ consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ATGCACGATACATTTTGACCAGTAAAGG----ATTGGCTGCAATGCTGGAGAAGTACAAA 109 consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ATACAGTTGTTAGGACGACTAATATCAATACTAAGGACATAAACAATTCAGTAATCTTTA 180 consensus_15110#3 ATACAGTTGTTAGGACGACTAATATCAATACTAAGGACATAAACAATTCAGTAATCTTTA 159 consensus_15110#0 ------------------------------------------------------------ consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 AACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCT-GTTTACCAGT 168 consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ACGCATGGTCTTTTGCTTTCTTAGTGTTCTCAGTGCCAATATATATTATCGCTTATTAGA 240 consensus_15110#3 ACGCATGGTCTTTTGCTTTCTTAGTGTTCTCAGTGCCAATATATATTATCGCTTATTAGA 219 consensus_15110#0 --------------------------------------------CTCTCCTCTCCTCTTC 16 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 TGGA-------CAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGT 221 consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 TGAAGTCCACACACTCTCATCTGTGTTACATTGATATCATAGTTACATAGAACTGCCATT 300 consensus_15110#3 TGAAGTCCACACACTCTCATCTGTGTTACATTGATATCATAGTTACATAGAACTGCCATT 279 consensus_15110#0 CTCCTCGCCTCGCGTCGCCTCCTCCGCGGCGTACCCTAACCCTAGCCTCGCCTTCCCCCC 76 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 GTGAAGACATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTG 281 consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 TTGTTGTTATATTCTG-CTGTTTTCTTGACCATGTTCAGACATCGACGGCGCATACTTTG 359 consensus_15110#3 TTGTTGTTATATTCTG-CTGTTTTCTTGACCATGTTCAGACATCGACGGCGCATACTTTG 338 consensus_15110#0 AATGGCGCGTCACGCGTGAGGAGCCGCCGCCGGAGCAGCAGGAGCGGGAGCGGGAGGGAG 136 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 GGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCT 341 consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 GGACAACATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCT 419 consensus_15110#3 GGACAACATTCCCGCACCTGTTTTTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCT 398 consensus_15110#0 GGAGGAGGAGATGTACAAGCAGGGGGGAGGAGGGGGAGGGGGAGGGGGAGGCGGAGGCGG 196 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 CGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACT 401 consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 CGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACT 479 consensus_15110#3 CGCAGCGCTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACT 458 consensus_15110#0 CGCGGGGCTGGACCGGAAGCGAATCAGCGACGCGCTCGACAAGCACCTCGAGAAGGCGGT 256 consensus_15110#5 ---------------------------------------------------------ACT 3 consensus_15110#2 GGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGC 461 consensus_15110#4 -------------------------CCTGGTGGACTACTGCAANAGTGGGGGGCATTTGC 35 consensus_15110#1 GGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGC 539 consensus_15110#3 GGAGTTTTGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGC 518 consensus_15110#0 CGCGGCGGCGGCGGC--GGCCGCGTCGCCCTCGACGTCGA-GGGGGTCGGCGGGGGGGA- 312 consensus_15110#5 AAGGGAATACGCTGC--GGC-GCGTCGCCCTCGACGTCGACGGGGGTCGGCGGGGGGGAC 60 * * *** * ** ** ** consensus_15110#2 CA-GCGATGGTCTCTATC-ATGC-CGCCACTGCCACCTCCACAGGCCTGCC-GCATGCAT 517 consensus_15110#4 CNANCGATGGTCTCTATC-ATGC-CGCCACTGCCACCTCCAAAGGCCTGCCCGCATGCAT 93 consensus_15110#1 CA-GCGATGGTCTCTATC-ATGC-CGCCACTGCCACCTCCACAGGCCTGCC-GCATGCAT 595 consensus_15110#3 CA-GCGATGGTCTCTATC-ATGC-CCCCAAAGNAACCCCTCCCCCTCCCCC-TCCTCCCC 574 consensus_15110#0 GGGGCGGTGGTGACCACCA--GCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAA 370 consensus_15110#5 GGGGCGGTGGTGACCACCCACGCGCCTCGTCGTGCCGTCCTCCGCGTCGTCCATGCCCAA 120 ** **** * * * ** * * * * * * * consensus_15110#2 GCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCG 577 consensus_15110#4 GCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACNTCAANCG 153 consensus_15110#1 GCACCTTGGCAGGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCG 655 consensus_15110#3 CCTGCTTG-TACATCTCCTCCTCCCTCCCTCCCGCTCCCGCTCCTGCTGC---TCCGGCG 630 consensus_15110#0 GGGACGGTGCTCCGAAGGGGAGTCTGAATCTGATAGTGAAGCATCAGATGTTAGTGGTTC 430 consensus_15110#5 GGGAC------------------------------------------------------- 125 * consensus_15110#2 ATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAA 637 consensus_15110#4 ATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTANCGAATNTGTGGGANCCCGTAA 213 consensus_15110#1 ATCAATGTTGTAACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAA 715 consensus_15110#3 GCGGCTCCTCACGCGTGACGC--GCCATTGGGGGGAAGGCGAGGCTA-GGGTTAGGGTAC 687 consensus_15110#0 TGACGGAGAGGATCACTCATGGATTTCATGGTACTGCAGTCTAAGAGGGAATGAATTCTT 490 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 TTC-TAAAGTAGCCGATGTCGTTTGTGCCTTGATAAAAAAACATAAATGAAGAAAAAAAA 696 consensus_15110#4 TTC-TAAANTANCCGNTGTTGTTTGTGCCTTGATTAAAATGGTGTGCTGCCCCAGGCATT 272 consensus_15110#1 TTC-TAAAGTAGCCGATGTTGTTTGTGCCTAAAAAAAAAAAAAAAAAAAAAAAA------ 768 consensus_15110#3 GCCGCGGAGGAGGCGACGC----------------------------------------- 706 consensus_15110#0 CTGTGAGGTTGATGATGATTATATACAAGATGACTTCAACCTCTGTGGGCTTAGCAGTCA 550 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 AACTCGAGGGGGGCCG-------------------------------------------- 712 consensus_15110#4 GGTTTAAAAAAAAAAAAAAAAAAAA----------------------------------- 297 consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 AGTTCCATATTATGATTATGCTCTTGATCTCATTTTAGATATCGAATCTTCTCACGGTGA 610 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 CATGTTCACCGAAGAACAAAACGAGCTAGTGGAGTCAGCTGCAGAGATGTTATATGGGCT 670 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 GATTCATGCACGATACATTTTGACCAGTAAAGGATTGGCTGCAATGCTGGAGAAGTACAA 730 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 AAACTATGATTTTGGAAGATGCCCACGAGTTTATTGCTGTGGTCAACCCTGTTTACCAGT 790 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 TGGACAATCAGATATACACCGATCTAGTACTGTGAAGATATACTGCCCCAAGTGTGAAGA 850 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 CATCTACTATCCACGGTCCAAGTACCAAGGCAACATCGACGGCGCATACTTTGGGACAAC 910 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 ATTCCCGCACCTGTTTCTGATGACGTACGAGCACCTCAAGCCTCAGAAACCCTCGCAGCG 970 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 CTACGTTCCTCGTGTATTTGGATTCAAGCTCCACAAGCCATGAGGCGGAGACTGGAGTTT 1030 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 TGCAGGGCTTGGAGACACCCTGGTGGACTACTGCAAGAGTGGGGGGCATTTGCCAGCGAT 1090 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 GGTCTCTATCATGCCGCCACTGCCACCTCCACAGGCCTGCCGCATGCATGCACCTTGGCA 1150 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 GGCAGGCCCACTCCACATTCGAAGTGTAGCTATAAAAAGACATCAATCGATCAATGTTGT 1210 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 AACGTAATTCCAATTGTTCTTTAATTAGCGAATCTGTGGGATCCCGTAATTCTAAAGTAG 1270 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 CCGATGTTGTTTGTGCCTTGATTAAAATGGTGTGCTGCCCCAGGCATTGGTTTATTTTAT 1330 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 CTTGTAAGTTGTAAGCAAGGTTCATGCCTGCAATTGGAAGGCGAGGGATGACAGGGGCAG 1390 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 GCCGGTATTCTGGTCCATATTGATCTGGTATTCTGTTGCTTGCTCGGAGTATCCACACAA 1450 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 TTCATCATCATGGTGGATGGAAGTGATGTTCAGTGCTCGGTATTCTGGTAATTCTAGTAG 1510 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ------------------------------------------------------------ consensus_15110#4 ------------------------------------------------------------ consensus_15110#1 ------------------------------------------------------------ consensus_15110#3 ------------------------------------------------------------ consensus_15110#0 AATTTTATTTTAGAATTATTGTAATGGTTTTAGGCGCCTTCCATTTTTCAATCCTCGGCC 1570 consensus_15110#5 ------------------------------------------------------------ consensus_15110#2 ----------------------------------------- consensus_15110#4 ----------------------------------------- consensus_15110#1 ----------------------------------------- consensus_15110#3 ----------------------------------------- consensus_15110#0 TTTTGAACTGCTAAAATAAGAGTAGAAGTGTTATAATCATT 1611 consensus_15110#5 ----------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||