These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1455 fasta sequence [CCCGATTGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA-CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT-GGGTAT-GGACT-GT-C-AGCTTGCCT-GTTACAATTGTGAACGCAAGT-GACAGCGATCCCT-CAATTGAAGCCCGTGATATTATTGGTTGGATCATGTGGCTGATCGGGGCAGGTATGGAAGCAATAGCTGATCAGCAGAAGCTTACGTTCAAGAATTCTCCGAGCAATCGTGGAAGGTGGTGTAATGTGGGTCTTTGGAGTTATACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC-TGCCTGGATGGTTCAAGATGGGCTT-CCTC-TTCGAGCTCCCGC-TC-TAC-AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC-AATGGAAGTCA-TTTTAGCATTTTCCACA-TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA-TCAATATGAATATGAAAAATGCTAGAATGACT-TATATTGT-AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA-T-TTCT-TTT-CGCTTT-GGTTATT-AGGGCAGTGAAAT-TGT-AT-CCACGTGAAAACA-TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACAGCCATTGACTATGGTTATTTGTCTGAGCAAAACACCTGATATGATTGACAATGGGGTCAGCACTAAACGAAGTTTGTACTCCTACACATTTTGACAATTATTTGTACAGAGTAGCTACTCCCTCCGTTTCAGGTTAAAAAAAA] [+] EMBL CF294133 [CCCGATTGGCAGTTTGGTACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCAGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATG ] [+] EMBL AK066216 [ TTGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTAT GGACT GT C AGCTTGCCT GTTACAATTGTGAACGCAAGT GACAGCGATCCCT CAATTGAAGCCCGTGATATTATTGGTTGGATCATGTGGCTGATCGGGGCAGGTATGGAAGCAATAGCTGATCAGCAGAAGCTTACGTTCAAGAATTCTCCGAGCAATCGTGGAAGGTGGTGTAATGTGGGTCTTTGGAGTTATACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAG ATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAG ] [+] EMBL CF278898 [ TGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTAT GGACT GT C AGCTTGCCT GTTACAATTGTGAACGCAAGT GACAG ] [+] EMBL CF276809 [ TGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTG GATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAACCTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTATGGGACT GT C AGCTTGCCT GTTACAATTGTGAACGCAAGT GACAGCGATCCCT CAATTGAAGCCCGTG ] [+] EMBL AU075798 [ GGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTTGGGGTAT GGACTGGTCC AGCTTGCCTGGTTACAATTGTGNACGCAAGTGGCCAGCGATCCCTCCAATTGAAGCCCGTGATAT ] [+] EMBL OSS11179A [ ACGGCGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTNNNGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTAT GGACT GT CAAGCTTGCCT GTTACAATTGTGACCG AAAT GCCAANGNTCCC CAATTG ] [-] EMBL CB620073 [ ACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGC ATGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATACATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TACATTGT AAAACGGAGGTAGTACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACAGCCATTGAAGGTGGTTATTTGTCTGAGCAAAA ] [+] EMBL AU030770 [ CAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTTCCCTCTTTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTAaaaaaaa ] [+] EMBL AU174997 [ TCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTNCCGCAACGTGANCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAAaaaaaa ] [-] EMBL CF276810 [ ATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAaaaa ] [+] EMBL BM419911 [ TCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCNCTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACCGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC CATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTAC ATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC CATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACN TTACGTTCCCTTCAGCTCTGTTTCTAAGCTAaaaaaaaaa ] [-] EMBL CF294132 [ GGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAAaaaa ] [-] EMBL CF278899 [ CCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAaaaa ] [+] EMBL BI808036 [ AGCTGTGTATGGAGCCCTTGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGCGTCGTACAAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCACAAATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAAaaa ] [-] EMBL CF296467 [ TGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCAATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTT ] [+] EMBL BI811189 [ ATACTTCCTCC TTTCAC AATGGAAGTCACTTTTA CATTTTCCACACTTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACACTCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGAGT TTCT TTT CGCTTT GGTTATT AGGCCAGTGAAAT TGT AT CCACGTGAAAACACTTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCC ACAGCCATTGACTATGGTTATTTGTCTGA CAAAACACCTGATATGATTGACAATGGGGTCAGCACTAAACGAAGTTTGTACTCCTACACATTTTGACAATTATTTGTACAGAGTAGCTACTCCCTCCGTTTCAGGTTAAAAAAAA] [+] EMBL BQ908422 [ TGACTGTATATTGTGAAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA TNTTCTGTTTGCGCTTTGGGTTATTGAGGGCAGTGAAATGTGTGATGCCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACAGCCATTGACTAaaaa ] consensusID : consensus_15111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTGGAGTTATACTCGCCATCCAAATTATTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTGCGTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCTTCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTATGTAGTATAAGATACTTCCTCCGTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATACATTAACATCAATATGAATATGAAAAATGCTAGAATGACTTACATTGTAAAACGGAGGTAGTACATTGTTATTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCAGTGAAATTGTATCCACCTGAAAACATTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA759214 [TTGGAGTTATACTCGCCATCCAAATTATTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTGCGTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCTTCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTATGTAGTATAAGATACTTCCTCCGTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATACATTAACATCAATATGAATATGAAAAATGCTAGAATGACTTACATTGTAAAACGGAGGTAGTACATTGTTATTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCAGTGAAATTGTATCCACCTGAAAACATTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15111#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence [CGAGCTCCCGCTTTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTACCGATTGTTGTGTACAATGTGTCTAGTATAAGATACTTCCTCCNTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACATCAATATGAATATGAAAAATTGCTAGGAATTGACCTTATTATTTGTAAAACGGACGGGAGGACACTTGTTATCTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCACGTGAAATTGTATCCACGTGAAAACATTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACACCCCTGACTATGGTAAAAAAAAAA] [+] EMBL BQ909040 [CGAGCTCCCGCTTTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTACCGATTGTTGTGTACAATGTGTCTAGTATAAGATACTTCCTCCNTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACATCAATATGAATATGAAAAATTGCTAGGAATTGACCTTATTATTTGTAAAACGGACGGGAGGACACTTGTTATCTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCACGTGAAATTGTATCCACGTGAAAACATTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACACCCCTGACTATGGTAAAAAAAAAA] consensusID : consensus_15111#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [AGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTNAAGGGAGCATGGCATTTCCGTCAGTTGTATTGACTGTGCTCGTTGTGATTNGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGATGGATGCAGATGCAGATGCACAATATGCTTCTTACTACTTGANTCCAGGACTGATGTGGTGTCTTGATAATCTAGCAGTTTCTCAGTTTTC] [+] EMBL AU174998 [AGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTNAAGGGAGCATGGCATTTCCGTCAGTTGTATTGACTGTGCTCGTTGTGATTNGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGATGGATGCAGATGCAGATGCACAATATGCTTCTTACTACTTGANTCCAGGACTGATGTGGTGTCTTGATAATCTAGCAGTTTCTCAGTTTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 CCCGATTGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAG 60 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 GATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGG 120 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 CCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCG 180 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 ATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAG 240 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 CTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGG 300 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 GTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGT 360 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 TTGATGAAATGCGCGATAACTTGGGAAAACTAGCAGTTTTCTGGATTTTCCAGGCTGTTT 420 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 GGGTATGGACTGTCAGCTTGCCTGTTACAATTGTGAACGCAAGTGACAGCGATCCCTCAA 480 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 TTGAAGCCCGTGATATTATTGGTTGGATCATGTGGCTGATCGGGGCAGGTATGGAAGCAA 540 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 TAGCTGATCAGCAGAAGCTTACGTTCAAGAATTCTCCGAGCAATCGTGGAAGGTGGTGTA 600 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ----------TTGGAGTTATACTCGCCATCCAAATTA-TTTGGCGAGATATTCCTTTGGT 49 consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 ATGTGGGTCTTTGGAGTTATACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGT 660 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 GGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCG 109 consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 GGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCG 720 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 GACCTGTATTCCTGACGCTCTGCGTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTT 169 consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 GACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTT 780 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 CTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTC 229 consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 CTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTC 840 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 CTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCT 289 consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 CTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCT 900 consensus_15111#3 ------------------------------------------AGGAGGCCGCGATGGGAA 18 consensus_15111#1 TCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGAT 349 consensus_15111#2 -------CGAGCTCCCGCTTTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGAT 53 consensus_15111#0 TCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGAT 960 consensus_15111#3 CCGTGCT-GGACTCCCACTTC-CTGGCGCTCACGGCCAT-CGTCACTGTGGGATATCAGC 75 * ***** ** * ** ** ** * * **** * * consensus_15111#1 ATCAGTGATCTCTAGCGATTGTTGTGTACAATGTATGTAGTATAAGATACTTCCTCCGTT 409 consensus_15111#2 ATCAGTGATCTCTACCGATTGTTGTGTACAATGTGTCTAGTATAAGATACTTCCTCCNTT 113 consensus_15111#0 ATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTT 1020 consensus_15111#3 --TGGTGTTCTTCATC-ATCACCGCGCTCC-TGCGGTTCGATAAAGTCACTGATTTCGCA 131 *** *** * * ** * * * ** * * *** *** * * consensus_15111#1 TCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATA 469 consensus_15111#2 TCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATA 173 consensus_15111#0 TCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATA 1080 consensus_15111#3 GGA-AGTACGAATTTCATCA-TACTTGCAATCCTCACGCTAGCTTTNAAGGG---AGCAT 186 * * * * * * * * ** * * *** * ** * * ** consensus_15111#1 GATATATATGTCTAGATACATTAACA----TCAATATGAATATGAAAAAT-GCTAGAA-- 522 consensus_15111#2 GATATATATGTCTAGATATATTAACA----TCAATATGAATATGAAAAATTGCTAGGAAT 229 consensus_15111#0 GATATATATGTCTAGATATATTAACA----TCAATATGAATATGAAAAAT-GCTAGAA-- 1133 consensus_15111#3 GGCATTTCCGTC-AGTTGTATTGACTGTGCTCGTTGTGATTNGGGGTCTTCGCTTAGGAC 245 * ** * *** ** * *** ** ** * *** * * * *** consensus_15111#1 TGAC-TTACA--TTGTAAAACGGA-GGTAGTACA-TTGTTAT-TGTCGATAAGTGATTTC 576 consensus_15111#2 TGACCTTATTATTTGTAAAACGGACGGGAGGACACTTGTTATCTGTCGATAAGTGATTTC 289 consensus_15111#0 TGAC-TTATA--TTGTAAAACGGA-GGGAGGACA-TTGTTAT-TGTCGATAAGTGATTTC 1187 consensus_15111#3 TATTCTTATT---AATGAGATGGATGCAGATGCA---GATGC------ACAATATGCTTC 293 * *** * * * *** * ** * * * ** *** consensus_15111#1 TTTTCGCTTTGGTTATTAGGGCA-GTGAAATTGTATCCACCTGAAAACATTACGTTCCCT 635 consensus_15111#2 TTTTCGCTTTGGTTATTAGGGCACGTGAAATTGTATCCACGTGAAAACATTACGTTCCCT 349 consensus_15111#0 TTTTCGCTTTGGTTATTAGGGCA-GTGAAATTGTATCCACGTGAAAACATTACGTTCCCT 1246 consensus_15111#3 TTACTACTTGANT--CCAGGAC---TGATGTGGTGTCT---TGATAATCTAGCAGTTTCT 345 ** *** * *** * *** * ** ** *** ** * * * ** consensus_15111#1 TCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTAAAAAAAAAAAAAAAAAAAA--- 692 consensus_15111#2 TCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAG 409 consensus_15111#0 TCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAG 1306 consensus_15111#3 -CAGTTTTC--------------------------------------------------- 353 *** * * consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 CCAACACCC-CTGACTATGGTAAAAAAAAAA----------------------------- 439 consensus_15111#0 CCAACAGCCATTGACTATGGTTATTTGTCTGAGCAAAACACCTGATATGATTGACAATGG 1366 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ------------------------------------------------------------ consensus_15111#2 ------------------------------------------------------------ consensus_15111#0 GGTCAGCACTAAACGAAGTTTGTACTCCTACACATTTTGACAATTATTTGTACAGAGTAG 1426 consensus_15111#3 ------------------------------------------------------------ consensus_15111#1 ----------------------------- consensus_15111#2 ----------------------------- consensus_15111#0 CTACTCCCTCCGTTTCAGGTTAAAAAAAA 1455 consensus_15111#3 ----------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||