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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1455 fasta sequence
[CCCGATTGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA-CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT-GGGTAT-GGACT-GT-C-AGCTTGCCT-GTTACAATTGTGAACGCAAGT-GACAGCGATCCCT-CAATTGAAGCCCGTGATATTATTGGTTGGATCATGTGGCTGATCGGGGCAGGTATGGAAGCAATAGCTGATCAGCAGAAGCTTACGTTCAAGAATTCTCCGAGCAATCGTGGAAGGTGGTGTAATGTGGGTCTTTGGAGTTATACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC-TGCCTGGATGGTTCAAGATGGGCTT-CCTC-TTCGAGCTCCCGC-TC-TAC-AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC-AATGGAAGTCA-TTTTAGCATTTTCCACA-TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA-TCAATATGAATATGAAAAATGCTAGAATGACT-TATATTGT-AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA-T-TTCT-TTT-CGCTTT-GGTTATT-AGGGCAGTGAAAT-TGT-AT-CCACGTGAAAACA-TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACAGCCATTGACTATGGTTATTTGTCTGAGCAAAACACCTGATATGATTGACAATGGGGTCAGCACTAAACGAAGTTTGTACTCCTACACATTTTGACAATTATTTGTACAGAGTAGCTACTCCCTCCGTTTCAGGTTAAAAAAAA]
[+] EMBL CF294133 [CCCGATTGGCAGTTTGGTACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCAGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATG ]
[+] EMBL AK066216 [ TTGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTAT GGACT GT C AGCTTGCCT GTTACAATTGTGAACGCAAGT GACAGCGATCCCT CAATTGAAGCCCGTGATATTATTGGTTGGATCATGTGGCTGATCGGGGCAGGTATGGAAGCAATAGCTGATCAGCAGAAGCTTACGTTCAAGAATTCTCCGAGCAATCGTGGAAGGTGGTGTAATGTGGGTCTTTGGAGTTATACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAG ATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAG ]
[+] EMBL CF278898 [ TGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTAT GGACT GT C AGCTTGCCT GTTACAATTGTGAACGCAAGT GACAG ]
[+] EMBL CF276809 [ TGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTG GATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAACCTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTATGGGACT GT C AGCTTGCCT GTTACAATTGTGAACGCAAGT GACAGCGATCCCT CAATTGAAGCCCGTG ]
[+] EMBL AU075798 [ GGAGGATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTTGGGGTAT GGACTGGTCC AGCTTGCCTGGTTACAATTGTGNACGCAAGTGGCCAGCGATCCCTCCAATTGAAGCCCGTGATAT ]
[+] EMBL OSS11179A [ ACGGCGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTNNNGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGTTTGATGAAATGCGCGATAACTTGGGAAAA CTAGCAGTTTTCTGGATTTTCCAGGCTGTTT GGGTAT GGACT GT CAAGCTTGCCT GTTACAATTGTGACCG AAAT GCCAANGNTCCC CAATTG ]
[-] EMBL CB620073 [ ACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGC ATGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATACATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TACATTGT AAAACGGAGGTAGTACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACAGCCATTGAAGGTGGTTATTTGTCTGAGCAAAA ]
[+] EMBL AU030770 [ CAAATTACTTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTTCCCTCTTTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTAaaaaaaa ]
[+] EMBL AU174997 [ TCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTNCCGCAACGTGANCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAAaaaaaa ]
[-] EMBL CF276810 [ ATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAaaaa ]
[+] EMBL BM419911 [ TCCTCGGACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCNCTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACCGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC CATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTAC ATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC CATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACN TTACGTTCCCTTCAGCTCTGTTTCTAAGCTAaaaaaaaaa ]
[-] EMBL CF294132 [ GGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAAaaaa ]
[-] EMBL CF278899 [ CCAGCTGTGTATGGAGCCC TGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGC TC TAC AATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAaaaa ]
[+] EMBL BI808036 [ AGCTGTGTATGGAGCCCTTGCCTGGATGGTTCAAGATGGGCTT CCTC TTCGAGCTCCCGCGTCGTACAAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCACAAATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAAaaa ]
[-] EMBL CF296467 [ TGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTTTCAC AATGGAAGTCA TTTTAGCATTTTCCACA TTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACA TCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCAATAAGTGA T TTCT TTT CGCTTT GGTTATT AGGGCAGTGAAAT TGT AT CCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTT ]
[+] EMBL BI811189 [ ATACTTCCTCC TTTCAC AATGGAAGTCACTTTTA CATTTTCCACACTTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACACTCAATATGAATATGAAAAATGCTAGAATGACT TATATTGT AAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGAGT TTCT TTT CGCTTT GGTTATT AGGCCAGTGAAAT TGT AT CCACGTGAAAACACTTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCC ACAGCCATTGACTATGGTTATTTGTCTGA CAAAACACCTGATATGATTGACAATGGGGTCAGCACTAAACGAAGTTTGTACTCCTACACATTTTGACAATTATTTGTACAGAGTAGCTACTCCCTCCGTTTCAGGTTAAAAAAAA]
[+] EMBL BQ908422 [ TGACTGTATATTGTGAAAACGGAGGGAGGACATTGTTATTGTCGATAAGTGA TNTTCTGTTTGCGCTTTGGGTTATTGAGGGCAGTGAAATGTGTGATGCCACGTGAAAACA TTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACAGCCATTGACTAaaaa ]
consensusID : consensus_15111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence
[TTGGAGTTATACTCGCCATCCAAATTATTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTGCGTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCTTCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTATGTAGTATAAGATACTTCCTCCGTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATACATTAACATCAATATGAATATGAAAAATGCTAGAATGACTTACATTGTAAAACGGAGGTAGTACATTGTTATTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCAGTGAAATTGTATCCACCTGAAAACATTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA759214 [TTGGAGTTATACTCGCCATCCAAATTATTTGGCGAGATATTCCTTTGGTGGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCGGACCTGTATTCCTGACGCTCTGCGTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTTCTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTCCTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCTTCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTAGCGATTGTTGTGTACAATGTATGTAGTATAAGATACTTCCTCCGTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATACATTAACATCAATATGAATATGAAAAATGCTAGAATGACTTACATTGTAAAACGGAGGTAGTACATTGTTATTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCAGTGAAATTGTATCCACCTGAAAACATTACGTTCCCTTCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15111#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[CGAGCTCCCGCTTTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTACCGATTGTTGTGTACAATGTGTCTAGTATAAGATACTTCCTCCNTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACATCAATATGAATATGAAAAATTGCTAGGAATTGACCTTATTATTTGTAAAACGGACGGGAGGACACTTGTTATCTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCACGTGAAATTGTATCCACGTGAAAACATTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACACCCCTGACTATGGTAAAAAAAAAA]
[+] EMBL BQ909040 [CGAGCTCCCGCTTTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGATATCAGTGATCTCTACCGATTGTTGTGTACAATGTGTCTAGTATAAGATACTTCCTCCNTTTCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATAGATATATATGTCTAGATATATTAACATCAATATGAATATGAAAAATTGCTAGGAATTGACCTTATTATTTGTAAAACGGACGGGAGGACACTTGTTATCTGTCGATAAGTGATTTCTTTTCGCTTTGGTTATTAGGGCACGTGAAATTGTATCCACGTGAAAACATTACGTTCCCTTCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAGCCAACACCCCTGACTATGGTAAAAAAAAAA]
consensusID : consensus_15111#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence
[AGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTNAAGGGAGCATGGCATTTCCGTCAGTTGTATTGACTGTGCTCGTTGTGATTNGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGATGGATGCAGATGCAGATGCACAATATGCTTCTTACTACTTGANTCCAGGACTGATGTGGTGTCTTGATAATCTAGCAGTTTCTCAGTTTTC]
[+] EMBL AU174998 [AGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGGCCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCGATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAGCTTTNAAGGGAGCATGGCATTTCCGTCAGTTGTATTGACTGTGCTCGTTGTGATTNGGGGTCTTCGCTTAGGACTATTCTTATTAATGAGATGGATGCAGATGCAGATGCACAATATGCTTCTTACTACTTGANTCCAGGACTGATGTGGTGTCTTGATAATCTAGCAGTTTCTCAGTTTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 CCCGATTGGCAGTTTGGCACCAGCACCAGCAGCAGGAGCAGAGACAGGTGAGAGGAGGAG 60
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 GATAAACGGAGGAGGCCGCGATGGGAACCGTGCTGGACTCCCACTTCCTGGCGCTCACGG 120
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 CCATCGTCACTGTGGGATATCAGCTGGTGTTCTTCATCATCACCGCGCTCCTGCGGTTCG 180
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 ATAAAGTCACTGATTTCGCAGGAAGTACGAATTTCATCATACTTGCAATCCTCACGCTAG 240
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 CTTTGAAGGGAGCATGGCATTTCCGTCAGGTTGTATTGACTGTGCTCGTTGTGATTTGGG 300
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 GTCTTCGCTTAGGACTATTCTTATTAATGAGGATTCTTCAATGGGGAGAGGACAAACGGT 360
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 TTGATGAAATGCGCGATAACTTGGGAAAACTAGCAGTTTTCTGGATTTTCCAGGCTGTTT 420
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 GGGTATGGACTGTCAGCTTGCCTGTTACAATTGTGAACGCAAGTGACAGCGATCCCTCAA 480
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 TTGAAGCCCGTGATATTATTGGTTGGATCATGTGGCTGATCGGGGCAGGTATGGAAGCAA 540
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 TAGCTGATCAGCAGAAGCTTACGTTCAAGAATTCTCCGAGCAATCGTGGAAGGTGGTGTA 600
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ----------TTGGAGTTATACTCGCCATCCAAATTA-TTTGGCGAGATATTCCTTTGGT 49
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 ATGTGGGTCTTTGGAGTTATACTCGCCATCCAAATTACTTTGGCGAGATATTCCTTTGGT 660
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 GGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCG 109
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 GGGGAATATTTGTAGCATCTACTCCAGTTCTCTCAGGAGCTGAATGGCTCGTGATCCTCG 720
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 GACCTGTATTCCTGACGCTCTGCGTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTT 169
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 GACCTGTATTCCTGACGCTCTTGCTTCTCTTCGTTAGTGGAATCCCACTTCTGGAGGCTT 780
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 CTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTC 229
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 CTGCTGATAAGCGCTTTGGACAGAACGAAGAATACCGCACGTACAAGAACACTACAAGTC 840
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 CTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCT 289
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 CTCTTATCCCACTACCACCAGCTGTGTATGGAGCCCTGCCTGGATGGTTCAAGATGGGCT 900
consensus_15111#3 ------------------------------------------AGGAGGCCGCGATGGGAA 18
consensus_15111#1 TCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGAT 349
consensus_15111#2 -------CGAGCTCCCGCTTTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGAT 53
consensus_15111#0 TCCTCTTCGAGCTCCCGCTCTACAATCGTGTACCGCAACGTGATCCTGTCAGCTGATGAT 960
consensus_15111#3 CCGTGCT-GGACTCCCACTTC-CTGGCGCTCACGGCCAT-CGTCACTGTGGGATATCAGC 75
* ***** ** * ** ** ** * * **** * *
consensus_15111#1 ATCAGTGATCTCTAGCGATTGTTGTGTACAATGTATGTAGTATAAGATACTTCCTCCGTT 409
consensus_15111#2 ATCAGTGATCTCTACCGATTGTTGTGTACAATGTGTCTAGTATAAGATACTTCCTCCNTT 113
consensus_15111#0 ATCAGTGATCTCTAGCGATTGTTGTGTACAATGTGTGTAGTATAAGATACTTCCTCCGTT 1020
consensus_15111#3 --TGGTGTTCTTCATC-ATCACCGCGCTCC-TGCGGTTCGATAAAGTCACTGATTTCGCA 131
*** *** * * ** * * * ** * * *** *** * *
consensus_15111#1 TCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATA 469
consensus_15111#2 TCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATA 173
consensus_15111#0 TCACAATGGAAGTCATTTTAGCATTTTCCACATTCATATTGATGTTAATGAATTTAGATA 1080
consensus_15111#3 GGA-AGTACGAATTTCATCA-TACTTGCAATCCTCACGCTAGCTTTNAAGGG---AGCAT 186
* * * * * * * * ** * * *** * ** * * **
consensus_15111#1 GATATATATGTCTAGATACATTAACA----TCAATATGAATATGAAAAAT-GCTAGAA-- 522
consensus_15111#2 GATATATATGTCTAGATATATTAACA----TCAATATGAATATGAAAAATTGCTAGGAAT 229
consensus_15111#0 GATATATATGTCTAGATATATTAACA----TCAATATGAATATGAAAAAT-GCTAGAA-- 1133
consensus_15111#3 GGCATTTCCGTC-AGTTGTATTGACTGTGCTCGTTGTGATTNGGGGTCTTCGCTTAGGAC 245
* ** * *** ** * *** ** ** * *** * * * ***
consensus_15111#1 TGAC-TTACA--TTGTAAAACGGA-GGTAGTACA-TTGTTAT-TGTCGATAAGTGATTTC 576
consensus_15111#2 TGACCTTATTATTTGTAAAACGGACGGGAGGACACTTGTTATCTGTCGATAAGTGATTTC 289
consensus_15111#0 TGAC-TTATA--TTGTAAAACGGA-GGGAGGACA-TTGTTAT-TGTCGATAAGTGATTTC 1187
consensus_15111#3 TATTCTTATT---AATGAGATGGATGCAGATGCA---GATGC------ACAATATGCTTC 293
* *** * * * *** * ** * * * ** ***
consensus_15111#1 TTTTCGCTTTGGTTATTAGGGCA-GTGAAATTGTATCCACCTGAAAACATTACGTTCCCT 635
consensus_15111#2 TTTTCGCTTTGGTTATTAGGGCACGTGAAATTGTATCCACGTGAAAACATTACGTTCCCT 349
consensus_15111#0 TTTTCGCTTTGGTTATTAGGGCA-GTGAAATTGTATCCACGTGAAAACATTACGTTCCCT 1246
consensus_15111#3 TTACTACTTGANT--CCAGGAC---TGATGTGGTGTCT---TGATAATCTAGCAGTTTCT 345
** *** * *** * *** * ** ** *** ** * * * **
consensus_15111#1 TCAGCTCTGTTTTTAAGCTATCCTTTTGGTCCCTTTTAAAAAAAAAAAAAAAAAAAA--- 692
consensus_15111#2 TCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAG 409
consensus_15111#0 TCAGCTCTGTTTCTAAGCTATCCTTTTGGTCCCTTTTTAAAATTTCCATGATATAAACAG 1306
consensus_15111#3 -CAGTTTTC--------------------------------------------------- 353
*** * *
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 CCAACACCC-CTGACTATGGTAAAAAAAAAA----------------------------- 439
consensus_15111#0 CCAACAGCCATTGACTATGGTTATTTGTCTGAGCAAAACACCTGATATGATTGACAATGG 1366
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 ------------------------------------------------------------
consensus_15111#2 ------------------------------------------------------------
consensus_15111#0 GGTCAGCACTAAACGAAGTTTGTACTCCTACACATTTTGACAATTATTTGTACAGAGTAG 1426
consensus_15111#3 ------------------------------------------------------------
consensus_15111#1 -----------------------------
consensus_15111#2 -----------------------------
consensus_15111#0 CTACTCCCTCCGTTTCAGGTTAAAAAAAA 1455
consensus_15111#3 -----------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||