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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15112#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1160 fasta sequence
[GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAAGCCTCTTCTCTTCTAGGGTTTCCT-CT--TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAA-GAAAACT-GGACTGATAGTGGTGGACCGTGTGC-TCT-ATTCATCAGTTGTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTG-TGAAGACAGTG-ATCCGTTGGATGTGCTGGTTATAATGCAGGAG-CCCGTTATA-CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA-GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT-CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAAAAAAAAATTTTTCAAAAA]
[+] EMBL CA767244 [GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAAGCCTCTTCTCTTCTAGGGTTTCCTCCTCCTCCTCGCACCGCGCCGCATCTCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTACTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAAGCTCAGCCCCCATCAAGGCTCCTGCTCTGAATGAAAGGATACTGTCATCCATGTCCCGGAGATCTATTGCCGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAA GAAAACT GGACTGATAGTGGTGGACCGTGTGC TCT ACTCGTCAGTTGTGTATCCTCACAACTATGGATTCATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCAGTTATA CCAGGCTGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGNTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGNCTGCAAGNGCTGC ]
[+] EMBL C97139 [ ttctcttCTCGTGCCTTCTAGGGTTTCCT CT TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGGTAAATATGAACTTGACAA GAAAACT GGACTGATAGTGGTGGACCGTGTGC TCT ATTCATCAGTTGTGTACCCTCACAA TATGGGATCATTCCTCGCACGCTGTGTTNAAG CAGTG ATCCGTTGG ]
[+] EMBL OSS13207A [ T CT TCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGGAAAACTGGGNCTGATAGTGGTGGACCGTGTGCTTCTAATTAATAAGTTGTGTACCCTAANAACTATGGATTAAT ]
[+] EMBL AU030320 [ GTGC TCT ATTCATCAGTTGTGT CCCTCACAACTATGGATTCATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCNGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAA ]
[+] EMBL AK069313 [ CATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAGCAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGC ]
[+] EMBL AU093264 [ CATTCCTCGCACGCTGTG TGAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAA]
[+] EMBL C98386 [ CATTCCTCGCACGCTGTG TGANGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTATA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAAAAAAAAA ]
[+] EMBL AU097052 [ TGAAGAAAGTGAATCCGTTGGATGTNCTGGTTATAATGCAGGAGCCCCGTTATACCCAGGATGCTTCCTACGAGCAAAGGCCATTGGNCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGNTTGGCTGAAANCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGNCGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCNCAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAaa ]
[-] EMBL CF294480 [ GAAGACAGTG ATCCGTTGGATGTGCTGGTTATAATGCAGGAG CCCGTTACA CCAGGATGCTTCCTACGAGCAAAGGCCATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGTGCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCCGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTAATA GGTTCGAGCAAAAAAA ]
[+] EMBL C27727 [ CAAGATTATTGCCGTTTGTNCTGATGATCCTNAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTGGCTGAAATCAGGCGCTTTTTTNAGGACTACAAGAAGAATGAGAACAA GGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATNAGGCCATAAAGCACT CCATGGNTCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTA ]
[+] EMBL BE230703 [ cGAGATCAGGCGNTWTTTTGAGGACTACAAGAAGAATGAGAACAAVANANGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACT CCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTGTGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACARGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAAAAAA ]
consensusID : consensus_15112#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 461 fasta sequence
[TCCTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG-AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA-GCACATCCATGGCATGA-TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC-GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]
[+] EMBL OSC30481 [TCCTCTCTCTCTCTCTCTATGTCGGTCTTCATCTNCCTCCTGCTTCTGCTNCTGNTCTTCNTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGNCTTCTAGGGNTTCCTCTTCCTCGCACCGCGNCGNCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTAGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCAGGCACATCCATGGCATGATTCTTGAGATT ]
[+] EMBL OSS1548A [TCCTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAG CTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCG GCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTAGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAAGGATACTGTCATCTATGTCCCGGAGATCTATT ]
[+] EMBL AU030319 [ CTCTCTCTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCNACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAG CCCCGTCAAGGNCCCTGCTCTGAATG AAAGGATACTGTCATCTATGT CCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAG ]
[+] EMBL CF294479 [ GCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]
[+] EMBL OSS10519A [ CTTCTCGTGCCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGCGGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]
[+] EMBL AU062872 [ GCACCG GCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAG CCCCNTCAAGGCCCCTGCTCTGAATG AAAGGATACTGTCATCTATGTCCCGGAGATCTATTGCA GCACATCCATGGCATGA TCTTGAGATTGGACCTGGTGCACCAACTATATTCAACTGC GTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGC]
consensusID : consensus_15112#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[TTGTCCCATTGGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTCTTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU096272 [TTGTCCCATTGGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTCTTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATACTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAGCACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTGCCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGTTCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15112#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[CAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU076100 [CAAGGAGGTTGCTGTCAATGACTTCCTGCCTGCAAGTGCTGCTTATGAGGCCATAAAGCACTCCATGGATCTCTATGCTACTTACATCGTGGAGGGCTTGAGGAGGTAGACTTGTGCCGCTTCCTGGACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAGCATGGCCTGCTGGGGCCTCTGGAACAAGTTATGCTGTTAACAAAATCAGGGCTCATTTCCTGTACGCCATGGCATTTCATTTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15112#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 211 fasta sequence
[CGCGTACTNTCCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCATCTATGTCCCGGAGATCTATTTGCAGNANAANCATGGGANGA]
[+] EMBL OSS11065A [CGCGTACTNTCCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCTCAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCATCTATGTCCCGGAGATCTATTTGCAGNANAANCATGGGANGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 GAAGCGGGAAGTACAATACTCTTCTCTTCTCTCTCTCTGTCGGTCTTCATCTTCCTCCTG 60
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 CTTCTGCTCTTCTTTAAAAGCTTCCAATCCCCCCTTCTCCCCCTTGTGTGCCGCGGCAAA 120
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 GCCTCTTCTCTTCTAGGGTTTCCTCTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCC 180
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 AGATTCAGATCTACTCCTACTCCTACTACCAAGGTTGTTGCCATGGCTCCCGCTGTTGAA 240
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 GCCGTGGAGAAGAAGACAGGCTCAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATA 300
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 CTGTCATCTATGTCCCGGAGATCTATTGCAGCACATCCATGGCATGATCTTGAGATTGGA 360
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 CCTGGTGCACCAACTATATTCAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAA 420
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 TATGAACTTGACAAGAAAACTGGACTGATAGTGGTGGACCGTGTGCTCTATTCATCAGTT 480
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 GTGTACCCTCACAACTATGGATTCATTCCTCGCACGCTGTGTGAAGACAGTGATCCGTTG 540
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 GATGTGCTGGTTATAATGCAGGAGCCCGTTATACCAGGATGCTTCCTACGAGCAAAGGCC 600
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 ATTGGTCTCATGCCTATGATTGACCAGGGAGAGGCAGATGACAAGATTATTGCCGTTTGT 660
consensus_15112#1 ------------------------------------------------------------
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 ------------------------------------------------------------
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 GCTGATGATCCTGAGTACAAGCATTACAATGATATCAAGGAGCTCCCACCTCACCGCTTG 720
consensus_15112#1 -----------------------------------------TCCTCTCTCTCTCTCTCTC 19
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 --------------------------------------------------TTGTCCCATT 10
consensus_15112#3 --------------------------------------------CAAGGAGGTTGCTGTC 16
consensus_15112#0 GCTGAAATCAGGCGCTTTTTTGAGGACTACAAGAAGAATGAGAACAAGGAGGTTGCTGTC 780
consensus_15112#1 TGTCGGTCTTCATCTTCCTCCTGCTTCTGCTCCTGCTCTTCTTTAAAAGCTTCCAATCCC 79
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 GGACTTTCCTTGCCTGCAAGTGCCTGCCTATGAGGCCCATAAAGCACTCCATGGATCCTC 70
consensus_15112#3 AATGACTTCCTGCCTGCAAGTGC-TGCTTATGAGGCC-ATAAAGCACTCCATGGATCTC- 73
consensus_15112#0 AATGACTTCCTGCCTGCAAGTGC-TGCTTATGAGGCC-ATAAAGCACTCCATGGATCTC- 837
consensus_15112#1 CCCTTCTCCTTGTGTGTCGTGGCAAAGCCTCTTCTCTTCTCGTGCCTTCTAGGGTTTCCT 139
consensus_15112#4 ----------------------------------------------------CGCGTACT 8
*
consensus_15112#2 TTATGCTACTTTACATCCGTGGAGGGCTTCGAGGGAGGTTAGACTTGTGCCGCTTCCTGG 130
consensus_15112#3 -TATGCTACTT-ACATC-GTGGAGGGCTT---GAGGAGGTAGACTTGTGCCGCTTCCTGG 127
consensus_15112#0 -TATGCTACTT-ACATC-GTGGAGGGCTT---GAGGAGGTAGACTTGTGCCGCTTCCTGG 891
consensus_15112#1 CTTCCTCGCACCGCGCCGCCTCGCCTCTTCGTCCCCAGATTCAGATCTACTCCTACTCCT 199
consensus_15112#4 NT-CCTCGCTCCATGCCGCCTCGCCTCTTCGTCCCCAGATTCANATCTACTCCTACTCCT 67
* * * *** * * * * * * ** *
consensus_15112#2 ACCGAGAGGATGGATGTTGACGAAAATTNGTCGGAGATATTATCACCTTATGAACAAATA 190
consensus_15112#3 ACCGAGAGGATGGATATTGAACGAACACTTTTGTGGAG--CATGGCCTGCTGGGGCCTCT 185
consensus_15112#0 ACCGAGAGGATGGATGTTGACGAAAA--TTGTGGAGATATTATCACCTTATGAACAAATA 949
consensus_15112#1 ACTACCAAGGTTGTTGCC--ATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCT 257
consensus_15112#4 ACTACCAAGGTTGTTGCC--ATGGCTCCCGCTGTTGAAGCCGTGGAGAAGAAGACAGGCT 125
** * * * * * * ** *
consensus_15112#2 CTATTATTTTGTTCGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAG 250
consensus_15112#3 GGAACAAGTTATGCTGT---TAACAAAATCAGGGCTCATTTCC--TGTACGCCATGGCAT 240
consensus_15112#0 CTATTATTTTGT-TGGTGTGTGATATACACCGGTATTATTCACATTTCAAGTAGTAACAG 1008
consensus_15112#1 CAGCCCCCGTCAAGGCCCCTGCTCTGAATGAAAGGATACTGTCA-TCTATGTCCCGGAGA 316
consensus_15112#4 CAGGCCCCGTNAAGGCCCCTGCTCTGAATTAAAGGATANTGTCA-TCTATGTCCCGGAGA 184
* * * * * * * *
consensus_15112#2 CACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTG 310
consensus_15112#3 TTCATTTAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 270
consensus_15112#0 CACAAGTAGAAACTACTAGTAGCACAACAAAGAGTGATATTCCTTTTATGGCCCTCGGTG 1068
consensus_15112#1 TCTATT-GCAGCACATCCATGGCATGATCTTGAGATTGGACCTGGTGCACCAACTATATT 375
consensus_15112#4 TCTATTTGCAGNANAANCATGGGANGA--------------------------------- 211
* * * * *
consensus_15112#2 CCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGT 370
consensus_15112#3 ------------------------------------------------------------
consensus_15112#0 CCACTACGATATGGAGTATTGGTGAATGATGATACTTTATGCTGATTCTATTGATATGGT 1128
consensus_15112#1 CAACTGCGTCATTGAGATTCCTAGGGGCAGCAAGGTTAAATATGAACTTGACAAGAAAAC 435
consensus_15112#4 ------------------------------------------------------------
consensus_15112#2 TCGAGCAAAGATTTGCATATTTTTTTCAAAAAAAAAAAAAAAAAAA 416
consensus_15112#3 ----------------------------------------------
consensus_15112#0 TCGAGCAAAAAAAAAAAAAAATTTTTCAAAAA-------------- 1160
consensus_15112#1 TGGACTGATAGTGGTGGACCGTGTGC-------------------- 461
consensus_15112#4 ----------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||