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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1555 fasta sequence
[AATGGACTTTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACCCCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTTCGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCCTCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG--ACGTCGAGGGGGTTGACGGGATAAGGATC--CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC-TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTTAGAATGCTGGGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG-CA-GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT-GGCAGAGAGGCT-GAGAAATGAT-GGAGCACATCATCATATTGTACA-GGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT-GTGACCAAACCTTTTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAAAAAAAAAAGTACGAGTTCATATTTCCTTTGGAATATGGAACATCAAAATCTGACACACGATTTCTT]
[+] EMBL CB643114 [AATGGACTTTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACCCCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTTCGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCCTCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGAGACCGGGCCGCCGGTGCACTACGTGAGGACGTTCCAGTTCCGCCATCAAGAACGAGGGGAACACCCCGGGGAACATCCTCGAGAGGATCGAGTGGGACAAGGAAGCCGACGATTCACAGATGAAGGACACAAGGCCACTGTACATGCTGAAG ]
[+] EMBL CB659571 [ aagcTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACCCCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTTCGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCCTCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCATTGGGGTGTTGAAGGCGTCATTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAATGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCG ]
[+] EMBL CB621395 [ CAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTT ]
[+] EMBL CB620594 [ CAAGCCCTTAGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGATAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATG ]
[+] EMBL CB964492 [ GCGG CGGCGACGAAACGGCGAGGGGCT A GGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGTCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGGAACTTTACTATGCGCGTATGAAGGGAGCAGATGCTGTTCTTCTGATGGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAGAGGGAAATGGACCGTGTGTAAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGGAAGA ]
[+] EMBL BU673400 [ cGCGG CGGCGACGAAACGGCGAGGGGCT A GGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGT CAGCTCATCGGCATCAAT ACCGTAAACTCGAGA TTTT AAGTTGA ]
[+] EMBL BI305728 [ cGCGG CGGCGACGAAACGGCGAGGGGCT A GGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGNCAACTNTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGA ]
[+] EMBL AK101835 [ CGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGT ]
[+] EMBL CA763617 [ GGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTTAGAATGCTGGGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT GGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACA GGGAGAGATGGAGCAATTAGCTTTTTTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCAAACCTTTTCGACCAATACAAATGGTTCCCTGCAAAAAAAaaaaaa ]
[-] EMBL CB621396 [ ATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTT ]
[-] EMBL CB643115 [ TACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTT ]
[-] EMBL CB620595 [ TGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTT ]
[+] EMBL AA749562 [ AGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGA ]
[+] EMBL BI810644 [ GGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCCACGGAGGATCCTGGCCAAGCCATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACCAACAGAGTGGGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACACGGGAGAGATGGAGCCATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCCTTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCCAACCTTTTCGACCCATACCAATGGTTCACTGCCAAGAAATATATGATCGAATAAGTTGGATTTAAAAAAAAAA ]
[+] EMBL AU055943 [ GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT GGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACA GGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCAAACCTTTTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAAAA ]
[+] EMBL AU055942 [ GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGTGGGCAGAGAGGCTGGAGAAATGATGGGAGCACATCATCATATTGTACA GGGNGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTNTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTTGGTGNCCAAACCTTNTCGACCAATACAAATGGTTC ]
[-] EMBL CB659572 [ GTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT GGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACA GGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTTTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCAAACCTTTTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAATTGCAAGGAGTACGAGTTCATATTTCCTTTGGAATATGGAACATCAAAATCTGACACACGATTTCTT]
consensusID : consensus_15135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[GGAATAGCTTGCGGCGTCATGGGCGCGGCGGCGACGAAACGGCGAGGGGCTAGGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCT]
[+] EMBL CB967121 [GGAATAGCTTGCGGCGTCATGGGCGCGGCGGCGACGAAACGGCGAGGGGCTAGGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCT]
consensusID : consensus_15135#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAGCCATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAACAGAGTGGCAGAGAGGCTGAGAAATGATGGAGCACATCATCATATTGTACAGGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTTGTGACCAACCTTTTCGACCAATACAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAATTGCAAGGAGTACGAGTTCATATTAAAAAAAAAA]
[+] EMBL BI811340 [GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAGCCATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAACAGAGTGGCAGAGAGGCTGAGAAATGATGGAGCACATCATCATATTGTACAGGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTTGTGACCAACCTTTTCGACCAATACAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAATTGCAAGGAGTACGAGTTCATATTAAAAAAAAAA]
consensusID : consensus_15135#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence
[GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCANNNNNATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACNAACAGNGTGGCAGNNNNNCTGNNNAATGATGGAGCACATCATCATATTGTACNNNNNNNNNTNGAGNAATTAGCTTTTCTGGNNNNNNNNTGGTCNNNNATNNNNNNNTTACNNNNNTNGNNNNNNNN]
[+] EMBL CF195984 [GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCANNNNNATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACNAACAGNGTGGCAGNNNNNCTGNNNAATGATGGAGCACATCATCATATTGTACNNNNNNNNNTNGAGNAATTAGCTTTTCTGGNNNNNNNNTGGTCNNNNATNNNNNNNTTACNNNNNTNGNNNNNNNN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 AATGGACTTTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACC 60
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 CCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTT 120
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 CGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCC 180
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCC 240
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 GCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGC 300
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 GGATGCCGCCGACGTCGAGGGGGTTGACGGGATAAGGATCCGGAGGCGCCCCGTGACCGG 360
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 GCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCC 420
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 GCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGA 480
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 GAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTT 540
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 CGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGT 600
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 CAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGC 660
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 CCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTT 720
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCT 780
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 GTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGA 840
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAAT 900
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 ATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCG 960
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTT 1020
consensus_15135#1 ------------------------------------------------------------
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGC 1080
consensus_15135#1 --------------------------------------------------GGAATAGCTT 10
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATT 1140
consensus_15135#1 GCGGCGTCATGGGCGCGGCGGCGACGAAACGGCGAGGGGCTAGGGTTTTGGAGCGGTGGA 70
consensus_15135#2 ---------------GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGA 45
consensus_15135#3 ---------------GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCANNNNNA 45
consensus_15135#0 CGTTTAGAATGCTGGGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGA 1200
consensus_15135#1 GGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGA 130
** * ** ** ***** ** * ** *
consensus_15135#2 TCCTGGCAA-GCCATCGCTGGGC-TTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCG- 102
consensus_15135#3 TCCTGGCAAAGCAATCGCTGGGC-TTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCG- 103
consensus_15135#0 TCCTGGCAAAGCAATCGCTGGGC-TTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCG- 1258
consensus_15135#1 ACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGG 190
* ** * *** * * * *** * * * * * ** * *
consensus_15135#2 --TAAAGTCTAAAGACAA-CAGAGTGGCAGAGAGGCTGAGAAA--TGATGGAGCACATCA 157
consensus_15135#3 --TAAAGTCTAAAGACNAACAGNGTGGCAGNNNNNCTGNNNAA--TGATGGAGCACATCA 159
consensus_15135#0 --TAAAGTCTAAAGACAAACAGAGTGGCAGAGAGGCTGAGAAA--TGATGGAGCACATCA 1314
consensus_15135#1 TTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGC-- 248
* * * *** * ** *** * ***** *
consensus_15135#2 TCATATTGTACAGGGAGAGATGGAGCAATT--AGCTTTTCTGGAGAGTTTTTGGTCAGCC 215
consensus_15135#3 TCATATTGTACNNNNNNNNNTNGAGNAATT--AGCTTTTCTGGNNNNNNNNTGGTCNNNN 217
consensus_15135#0 TCATATTGTACAGGGAGAGATGGAGCAATT--AGCTTTTCTGGAGAGTTTTTGGTCAGCC 1372
consensus_15135#1 TCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCC 308
** * ** * * * ** ** * * *****
consensus_15135#2 ATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCA---TATACTCTTGTGACCAA-CCTT 271
consensus_15135#3 ATNNNNNNNTTACNNNNNTNGNNNNNNNN------------------------------- 246
consensus_15135#0 ATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCA---TATACTCTTGTGACCAAACCTT 1429
consensus_15135#1 -TGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACT 367
* ** * *
consensus_15135#2 TTCGACCAATACAA-TGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAT 330
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAA 1489
consensus_15135#1 TCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTC 427
consensus_15135#2 TGCAAGGAGTACGAGTTCATATTAAAAAAAAAA--------------------------- 363
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 AAAAAAAAGTACGAGTTCATATTTCCTTTGGAATATGGAACATCAAAATCTGACACACGA 1549
consensus_15135#1 TCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTG 487
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 TTTCTT------------------------------------------------------ 1555
consensus_15135#1 GAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATG 547
consensus_15135#2 ------------------------------------------------------------
consensus_15135#3 ------------------------------------------------------------
consensus_15135#0 ------------------------------------------------------------
consensus_15135#1 CGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATA 607
consensus_15135#2 -----------------------------------------
consensus_15135#3 -----------------------------------------
consensus_15135#0 -----------------------------------------
consensus_15135#1 TCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCT 648
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||