These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15135#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1555 fasta sequence [AATGGACTTTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACCCCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTTCGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCCTCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG--ACGTCGAGGGGGTTGACGGGATAAGGATC--CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC-TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTTAGAATGCTGGGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG-CA-GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT-GGCAGAGAGGCT-GAGAAATGAT-GGAGCACATCATCATATTGTACA-GGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT-GTGACCAAACCTTTTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAAAAAAAAAAGTACGAGTTCATATTTCCTTTGGAATATGGAACATCAAAATCTGACACACGATTTCTT] [+] EMBL CB643114 [AATGGACTTTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACCCCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTTCGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCCTCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGAGACCGGGCCGCCGGTGCACTACGTGAGGACGTTCCAGTTCCGCCATCAAGAACGAGGGGAACACCCCGGGGAACATCCTCGAGAGGATCGAGTGGGACAAGGAAGCCGACGATTCACAGATGAAGGACACAAGGCCACTGTACATGCTGAAG ] [+] EMBL CB659571 [ aagcTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACCCCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTTCGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCCTCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCATTGGGGTGTTGAAGGCGTCATTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAATGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCG ] [+] EMBL CB621395 [ CAAGCTCGCCGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTT ] [+] EMBL CB620594 [ CAAGCCCTTAGCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGCGGATGCCGCCG ACGTCGAGGGGGTTGACGGGATAAGGATC CGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGATAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATG ] [+] EMBL CB964492 [ GCGG CGGCGACGAAACGGCGAGGGGCT A GGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGTCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGGAACTTTACTATGCGCGTATGAAGGGAGCAGATGCTGTTCTTCTGATGGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAGAGGGAAATGGACCGTGTGTAAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGGAAGA ] [+] EMBL BU673400 [ cGCGG CGGCGACGAAACGGCGAGGGGCT A GGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGT CAGCTCATCGGCATCAAT ACCGTAAACTCGAGA TTTT AAGTTGA ] [+] EMBL BI305728 [ cGCGG CGGCGACGAAACGGCGAGGGGCT A GGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCC TCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGNCAACTNTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGA ] [+] EMBL AK101835 [ CGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGT ] [+] EMBL CA763617 [ GGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATTCGTTTAGAATGCTGGGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT GGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACA GGGAGAGATGGAGCAATTAGCTTTTTTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCAAACCTTTTCGACCAATACAAATGGTTCCCTGCAAAAAAAaaaaaa ] [-] EMBL CB621396 [ ATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTT ] [-] EMBL CB643115 [ TACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTT ] [-] EMBL CB620595 [ TGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCGTGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTTTCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGCTCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTT ] [+] EMBL AA749562 [ AGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGA ] [+] EMBL BI810644 [ GGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCCACGGAGGATCCTGGCCAAGCCATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACCAACAGAGTGGGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACACGGGAGAGATGGAGCCATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCCTTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCCAACCTTTTCGACCCATACCAATGGTTCACTGCCAAGAAATATATGATCGAATAAGTTGGATTTAAAAAAAAAA ] [+] EMBL AU055943 [ GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT GGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACA GGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCAAACCTTTTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAAAA ] [+] EMBL AU055942 [ GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGTGGGCAGAGAGGCTGGAGAAATGATGGGAGCACATCATCATATTGTACA GGGNGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTNTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTTGGTGNCCAAACCTTNTCGACCAATACAAATGGTTC ] [-] EMBL CB659572 [ GTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAG CA GGAGGATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAAACAGAGT GGCAGAGAGGCT GAGAAATGAT GGAGCACATCATCATATTGTACA GGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTTTTTACTAAACTCGATCAGTTCTTCCCATATACTCTT GTGACCAAACCTTTTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAATTGCAAGGAGTACGAGTTCATATTTCCTTTGGAATATGGAACATCAAAATCTGACACACGATTTCTT] consensusID : consensus_15135#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence [GGAATAGCTTGCGGCGTCATGGGCGCGGCGGCGACGAAACGGCGAGGGGCTAGGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCT] [+] EMBL CB967121 [GGAATAGCTTGCGGCGTCATGGGCGCGGCGGCGACGAAACGGCGAGGGGCTAGGGTTTTGGAGCGGTGGAGGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCT] consensusID : consensus_15135#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAGCCATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAACAGAGTGGCAGAGAGGCTGAGAAATGATGGAGCACATCATCATATTGTACAGGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTTGTGACCAACCTTTTCGACCAATACAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAATTGCAAGGAGTACGAGTTCATATTAAAAAAAAAA] [+] EMBL BI811340 [GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGATCCTGGCAAGCCATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACAACAGAGTGGCAGAGAGGCTGAGAAATGATGGAGCACATCATCATATTGTACAGGGAGAGATGGAGCAATTAGCTTTTCTGGAGAGTTTTTGGTCAGCCATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCATATACTCTTGTGACCAACCTTTTCGACCAATACAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAATTGCAAGGAGTACGAGTTCATATTAAAAAAAAAA] consensusID : consensus_15135#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCANNNNNATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACNAACAGNGTGGCAGNNNNNCTGNNNAATGATGGAGCACATCATCATATTGTACNNNNNNNNNTNGAGNAATTAGCTTTTCTGGNNNNNNNNTGGTCNNNNATNNNNNNNTTACNNNNNTNGNNNNNNNN] [+] EMBL CF195984 [GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCANNNNNATCCTGGCAAAGCAATCGCTGGGCTTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCGTAAAGTCTAAAGACNAACAGNGTGGCAGNNNNNCTGNNNAATGATGGAGCACATCATCATATTGTACNNNNNNNNNTNGAGNAATTAGCTTTTCTGGNNNNNNNNTGGTCNNNNATNNNNNNNTTACNNNNNTNGNNNNNNNN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 AATGGACTTTCTCGCTATCGGATCCGCACCTCCCCGCCCGCCGGGCCTCGCACTCCCACC 60 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 CCTCACCCGTCACCACCACCTCCTCCTCCACCGCTCCAAAACCCTAGCCCCTCGCCGTTT 120 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 CGTCGCCGCCGCGCCCATGGACGCCGCCGCCGCCGCCGCCGGCCGGGGCGGCCCCGCCCC 180 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TCCCCGCTGCGCCCGCGCCGAGACGGATTCGGAGGATGCGGTCGCGACGACAAGCTCGCC 240 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 GCACTCCGCCGAGGCCGCGGGCGCGGCGGAGCAGGGGAACGGGGCCCCGGCCCCGGTGGC 300 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 GGATGCCGCCGACGTCGAGGGGGTTGACGGGATAAGGATCCGGAGGCGCCCCGTGACCGG 360 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 GCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCC 420 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 GCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGGTTTCACAGATGAAGGA 480 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 GAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGCTCCTCCGGTGAGGGATTT 540 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 CGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCCTGCTCTGATTGCAGAGGT 600 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 CAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACTTCGAGCCGGTTCAGATCGC 660 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 CCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTCTCACAGATGCAAAATACTT 720 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTGGAGTACAGTGTCCTCTGCT 780 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 GTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATGCGCGTTTGAAGGGAGCAGA 840 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATATCAAGTATATGTTGAAAAT 900 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 ATGCAAAATACTTGGCATGGCTGCTTTAGTTGAGGTGCATGATGAAAGGGAAATGGACCG 960 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TGTGTTAGGGATAGATGGTGTCCAGCTCATCGGCATCAATAACCGTAACCTCGAGACTTT 1020 consensus_15135#1 ------------------------------------------------------------ consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TCAAGTTGATATTTCAAACACTAAAAATCTTCTTGAGGGTGAAAGAGGACAAACTATAGC 1080 consensus_15135#1 --------------------------------------------------GGAATAGCTT 10 consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TCAGAAAGGCATAATTGTTGTAGGGGAATCAGGGCTGTTCACACCAGACCATATTTCATT 1140 consensus_15135#1 GCGGCGTCATGGGCGCGGCGGCGACGAAACGGCGAGGGGCTAGGGTTTTGGAGCGGTGGA 70 consensus_15135#2 ---------------GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGA 45 consensus_15135#3 ---------------GGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCANNNNNA 45 consensus_15135#0 CGTTTAGAATGCTGGGGTTAAAGCTGTTCTCGTTGGGGAGTCTCTCATCAAGCAGGAGGA 1200 consensus_15135#1 GGCGCCCCGTGACCGGGCCGCCGGTGCACTACGTGGGGCCGTTCCAGTTCCGCCTCGAGA 130 ** * ** ** ***** ** * ** * consensus_15135#2 TCCTGGCAA-GCCATCGCTGGGC-TTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCG- 102 consensus_15135#3 TCCTGGCAAAGCAATCGCTGGGC-TTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCG- 103 consensus_15135#0 TCCTGGCAAAGCAATCGCTGGGC-TTTTCGGCAAAGACATCTCACCTGTGAGTGCTGCG- 1258 consensus_15135#1 ACGAGGGGAACACGCCGCGGAACATCCTCGAGAGGATCGTGTGGGACAAGGAAGCCGAGG 190 * ** * *** * * * *** * * * * * ** * * consensus_15135#2 --TAAAGTCTAAAGACAA-CAGAGTGGCAGAGAGGCTGAGAAA--TGATGGAGCACATCA 157 consensus_15135#3 --TAAAGTCTAAAGACNAACAGNGTGGCAGNNNNNCTGNNNAA--TGATGGAGCACATCA 159 consensus_15135#0 --TAAAGTCTAAAGACAAACAGAGTGGCAGAGAGGCTGAGAAA--TGATGGAGCACATCA 1314 consensus_15135#1 TTTCACAGATGAAGGAGAGAAGGCCACTGTACATGCTGAAGGGGCCGCTGGAGAATGC-- 248 * * * *** * ** *** * ***** * consensus_15135#2 TCATATTGTACAGGGAGAGATGGAGCAATT--AGCTTTTCTGGAGAGTTTTTGGTCAGCC 215 consensus_15135#3 TCATATTGTACNNNNNNNNNTNGAGNAATT--AGCTTTTCTGGNNNNNNNNTGGTCNNNN 217 consensus_15135#0 TCATATTGTACAGGGAGAGATGGAGCAATT--AGCTTTTCTGGAGAGTTTTTGGTCAGCC 1372 consensus_15135#1 TCCTCCGGTGAGGGATTTCGTTGGGGTGTTGAAGGCGTCTTTTGATCGGACTGGTCTGCC 308 ** * ** * * * ** ** * * ***** consensus_15135#2 ATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCA---TATACTCTTGTGACCAA-CCTT 271 consensus_15135#3 ATNNNNNNNTTACNNNNNTNGNNNNNNNN------------------------------- 246 consensus_15135#0 ATTTTTTGTTTACTAAACTCGATCAGTTCTTCCCA---TATACTCTTGTGACCAAACCTT 1429 consensus_15135#1 -TGCTCTGATTGCAGAGGTCAAGAAGGCTTCACCGAGCCGCGGTGTCCTGAGGGAGGACT 367 * ** * * consensus_15135#2 TTCGACCAATACAA-TGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAT 330 consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TTCGACCAATACAAATGGTTCACTGCAAAGAAATATATGATCGAATAAGTTGGATTTAAA 1489 consensus_15135#1 TCGAGCCGGTTCAGATCGCCCAAACATATGAGAAAAATGGAGCAGCATGCTTAAGTGTTC 427 consensus_15135#2 TGCAAGGAGTACGAGTTCATATTAAAAAAAAAA--------------------------- 363 consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 AAAAAAAAGTACGAGTTCATATTTCCTTTGGAATATGGAACATCAAAATCTGACACACGA 1549 consensus_15135#1 TCACAGATGCAAAATACTTTCAGGGAAGTTTTGACTATTTGGATGCTATACGCAATGCTG 487 consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 TTTCTT------------------------------------------------------ 1555 consensus_15135#1 GAGTACAGTGTCCTCTGCTGTGCAAAGAGTTCATTGTTGATGCCTGGCAACTTTACTATG 547 consensus_15135#2 ------------------------------------------------------------ consensus_15135#3 ------------------------------------------------------------ consensus_15135#0 ------------------------------------------------------------ consensus_15135#1 CGCGTTTGAAGGGAGCAGATGCTGTTCTTCTGATTGCTGCTGTCTTACCTGATCTTGATA 607 consensus_15135#2 ----------------------------------------- consensus_15135#3 ----------------------------------------- consensus_15135#0 ----------------------------------------- consensus_15135#1 TCAAGTATATGTTGAAAATATGCAAAATACTTGGCATGGCT 648 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||