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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15136#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1343 fasta sequence
[AGTCTTTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCTCCGCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCTGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA-TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA-AGCTTTAC-AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT-GGAACAA-TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG-AGTTGGAGCCAGCTGAT-AGAAGAACACCTGTTCATGTGAA-TGTTATCAAACGACT-GGAAGAC-TAT---CA-GG-CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG-CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT-TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA-GAACCCGGTG-TCCTTAAATTGTCGATTATCATGCCAGATAC-TGTACT-GGAATACATTCT-GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA-TTAATAGTAATTACCTGAATTGCAACAAAAAGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATATCATCAAATCATTCGTGTTCATTTCAAAAA]
[+] EMBL AK069067 [ GTCTTTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCTCCGCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCTGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCTGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGATCAAGCTAGACAGATGGGTGCTCTCCAAGAGTCAACCG CTCCATTTGAGGATCAATCTCTCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACCATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATC AACGACTAGGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTATCAACATGCACCACACGGTGGGCGACATAAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGACCTAGGAGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAACTGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATATCATCAAATCATTCGTGTTCA ]
[+] EMBL CB658950 [agctcgTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGC ]
[+] EMBL CB965946 [ CCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC TGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCTTCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGACGAGAG CCAGGCAACAGCTCCTGACACTCAAGCAACCCGCAGGTCCGTAGGAATAGTTGTGGACGACTCGCTCCCAT TAACA ]
[-] EMBL BI810741 [ CCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAAGTGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGTCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAACTGTTATCAAACGACT GG AGACTTATTCACAGGG CTCC ]
[+] EMBL AU094836 [ ACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAAGAGAGACAGCACCAGCTGCACCTCCACCGCCTNGGAATGTACTTCACAATATACAATTCTGGGAACAA TGGATTCACTGTANATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAATGCCCCCAGGNAGTTGGAGCCAGCTGATNAGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACTGGGAAGAC T ]
[+] EMBL BP184669 [ TCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTC ]
[+] EMBL CA765234 [ TCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA TC ACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGA AGCTTTAC AGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTGCTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGTCCCCAGG AGTTGGAGCCAGCCGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAGGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGTCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGT ]
[+] EMBL AA754252 [ cgagTCCATTTGAGGATCAATCTTCCAGTTCAAGARAGCTTTACTAGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAATATACAATTCT GGAACAA TGGATTCACTGTAGATGATGGTCCGATGAGGGACTATGATGATCCTGCAAATGCTGATTTCATTGAGAGCATCAAGVAGTCCCAGTGCCCCCAGG AGTTGGAGCCTTCTGAT AGAAGAACACC GTTCATGTGAR TGTTATCAAASGACT GGRAGAC TAT CA GGASTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTRGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAAC ]
[+] EMBL CB683880 [ ATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGG AGTTGGAGCCAGCTGAT AGAAGAACACCTGTTCATGTGAA TGTTATCAAACGACT GGAAGAC TAT CA GG CTCCTCTAAGGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTGGATCTTCTGCAGAAGAGAG CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAAGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAAGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAACTGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGA ]
[+] EMBL BI798385 [ CCTCCATCA CCTTCCCAGGTTTTGGAAGAACCCCTTGT GTGGATCTTCTCCAGAAGAGAGCCCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCATGTTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTGCTCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA CTAATAGTAATTACCTGAATTGC ACAAAAAa ]
[+] EMBL BI798682 [ CCTTCCAGGGT TTGGAAG ACCCTT GT GT GATCTTCTCCAGAAGAGA CCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCT GCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA CTAATAGTAATTACCTGAATTGCAAAAAAAA ]
[+] EMBL BI798959 [ GCTCCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAA GCT GCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTACTTAATAGTAATTACCTGAATTGCAAAAAAAA ]
[+] EMBL AU094488 [ CCTGCCACTCAAGAACCCCGCAGGTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAACTGTCGTGCCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATATCATCAAATCATTCGTGTTCATTTCAAAAA]
[+] EMBL OSC976 [ CTGCCACTCAAGAACCCCGCA GTCCGTTGGAATAGTTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAAGGAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATACTTGTACTGGGAATACATTCTGGAATCGAACCAGACTnc ]
[-] EMBL CA923277 [ TTGTGGACGACTCGCTCCCAT TTACATCCATACAGCTAAGGCTGGCCGATGGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGCCTTTCATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCGAAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCCTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCC ]
[+] EMBL AU029794 [ catTTCAGAAGATNTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAA GAACCCGGTG TCCTTAAATTGTCGATTATCATGCCAGATAC TGTACT GGAATACATTCT GCATCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTA TTAATAGTAATTACCTGAATTGCAACAAAAAaaa ]
consensusID : consensus_15136#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence
[CTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGATCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTNTACAGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTACAATATACAATTCTGGAACANTGGATTCACTGGAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCNATTGCTTGATTCATTGAGAGCCATCAGAAGTCCAGTGCCCCCAGAGTTGACCCAGCTGATNGAGAACACCGGTCATGTGATGTATCNACGACTGANGACTATAGCTCTTTAGGCCTCATACTTTCAGGTGTGAAGACCTNNGTGGACTCTGAAAGAAGCAGACAGTCTGCTTAGAACCCGAGCCGTGGATATTGCCATGGTCATACTCATAGTAGGTGCAGGCCTCAGTGCCTGACTCCCAGCGCCACCGGGGATGCTTTCCGGTCGGGGGGTAGCATTGTAAGTGCCCAAAGAGAACTCGAACTGATTGGTGGGTGTTGATAAAGAGGGCCGTTAAACGTTGTATCGATTTCG]
[+] EMBL AW155202 [CTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGACCTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCGGCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCGACGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAACAAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGATCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTNTACAGGGACTGGTCGACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTACAATATACAATTCTGGAACANTGGATTCACTGGAGATGATGGTCCGCTGAGGGACTATGATGATCCTGCNATTGCTTGATTCATTGAGAGCCATCAGAAGTCCAGTGCCCCCAGAGTTGACCCAGCTGATNGAGAACACCGGTCATGTGATGTATCNACGACTGANGACTATAGCTCTTTAGGCCTCATACTTTCAGGTGTGAAGACCTNNGTGGACTCTGAAAGAAGCAGACAGTCTGCTTAGAACCCGAGCCGTGGATATTGCCATGGTCATACTCATAGTAGGTGCAGGCCTCAGTGCCTGACTCCCAGCGCCACCGGGGATGCTTTCCGGTCGGGGGGTAGCATTGTAAGTGCCCAAAGAGAACTCGAACTGATTGGTGGGTGTTGATAAAGAGGGCCGTTAAACGTTGTATCGATTTCG]
consensusID : consensus_15136#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 643 fasta sequence
[GTTTGGAAGAACCCTTGGTGTGGATCTTCTGCAGAAGAGACCCCATGCACCAGCTCCTTCGCCAACTCAAGAACCCCGCAGGTCCCGTTGGGAATATTTGTGGACAGACTCGCTCACCATGTGACATCACATACAGCTAAGGCTGCCACGATGACACTCAGCATGGTTGCCCGTTTCAAACAATGCAACCACACAGGTGGCAGACAATCAAGGTGCTTTCAATCAGACCGCCTCTCAGGCACTGGGGCTACAAGCCCTGATCAAGCTCGCAAGACTGGGTTTGCCCGCCAGAAGCAGCTGGGCTGGATGCCAAGCACAAGACCGTGCGAGCAAGCTGTTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGCCTAGGGCGCACGTCTCATATGGCTATCTTTGGAAACAAGAACCCGGTGTCCTTAAATTGGTCGATTATCATCCAGATACTGGTACTGGAATACATTCTGGCATGCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATA-CCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL BI798680 [GTTTGGAAGAACCCTTGGTGTGGATCTTCTGCAGAAGAGACCCCATGCACCAGCTCCTTCGCCAACTCAAGAACCCCGCAGGTCCCGTTGGGAATATTTGTGGACAGACTCGCTCACCATGTGACATCACATACAGCTAAGGCTGCCACGATGACACTCAGCATGGTTGCCCGTTTCAAACAATGCAACCACACAGGTGGCAGACAATCAAGGTGCTTTCAATCAGACCGCCTCTCAGGCACTGGGGCTACAAGCCCTGATCAAGCTCGCAAGACTGGGTTTGCCCGCCAGAAGCAGCTGGGCTGGATGCCAAGCACAAGACCGTGCGAGCAAGCTGTTCTGGCGAACTCTGTCATCATTCAGAAGATGTAGCCTAGGGCGCACGTCTCATATGGCTATCTTTGGAAACAAGAACCCGGTGTCCTTAAATTGGTCGATTATCATCCAGATACTGGTACTGGAATACATTCTGGCATGCGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATA CCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATGAAAAAAAAA ]
[+] EMBL CB000823 [ ATTCT GCAT CGAACCAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15136#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence
[GCAGCTAAATTACCTCACTAAGGGAATAGCTGCGGCGCGGGGGCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCG]
[+] EMBL BU672979 [GCAGCTAAATTACCTCACTAAGGGAATAGCTGCGGCGCGGGGGCCCACCATCCGCACCCTCGCGGACATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGGCGGCGGCAGCGACTCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15136#1 ----------CTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCACCCCGCGAC 50
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 AGTCTTTCGACTCGCCGAGTACGCGACCCGCGAGCCAAACCCTACCTTCCTCCGCGCGAC 60
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 CTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCG 110
consensus_15136#3 ---------------------------------------------GCAGCTA-AATTACC 14
consensus_15136#0 CTCGATCCCCCCACCCCCACCCCTCGGCGGCGATGAGCTCCTCCAACAACGGCGGTGGCG 120
consensus_15136#2 -----------------------------------------------GTTTGGAAGAACC 13
*
consensus_15136#1 GCGACAAGAAGCCGGCGTCCGGCGGCCGCGGGGGCCCCAC-CATCCGCACCCTCGCGGAC 169
consensus_15136#3 TCACTAAGGGAATAGCT----GCGGC-GCGGGGGCCC-AC-CATCCGCACCCTCGCGGAC 67
consensus_15136#0 GCGACAAGAAGCCGGCGTCCGGCGGCCGCTGGGGCCCCAC-CATCCGCACCCTCGCGGAC 179
consensus_15136#2 CTTGGTGTGGATCTTCT-------GCAGAAGAGACCCCATGCACCAGCTCCTTCGCCAAC 66
* ** * * * *** * ** * ** ** **** **
consensus_15136#1 ATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGG-CGGCGGCAGCGACTCCGA 228
consensus_15136#3 ATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGG-CGGCGGCAGCGACTCCG- 125
consensus_15136#0 ATCAGCCGCGGCCCGTCCGGCTTCCCTGGGGGCGGCGGCGG-CGGCGGCAGCGACTCCGA 238
consensus_15136#2 TCAAG----AACCCCGCAGGTCCCGTTGGGAATATTTGTGGACAGACTCGCTCACCATGT 122
** *** * ** * **** * ** * * * ** *
consensus_15136#1 CGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAAC 288
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 CGAGCCCCAGGAGTACTACACCGGCGGCGAGAAGAGTGGGATGCTTGTTCAGGACCCAAC 298
consensus_15136#2 GACATCACATACAGCTAAGGCTGCCACGATGACACTCAGCATGGTTGCCC--GTTTCAAA 180
consensus_15136#1 AAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA 348
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 AAGAAGAAACACTGTGGACTCAATCTTCGAACAAGCTAGACAGATGGGTGCTCTCCAAGA 358
consensus_15136#2 CAATGCAACCACACAGGTGGCAGACAATCAAGGTGCTTTCAATCAGACCGCCTCTCAGGC 240
consensus_15136#1 TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTNTACAGGGACTGGTCG 408
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 TCAACCGCCTCCATTTGAGGATCAATCTTCCAGTTCAAGAAGCTTTACAGGGACTGGTCG 418
consensus_15136#2 ACTGGGGCTACAAGCCCTGATCAAGCTCGCAAGACTGGGTTTGCCCGCCAGAAGCAGCTG 300
consensus_15136#1 ACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTT-ACAA 467
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 ACTTCTTTCAGGAGAGACAGCACCAGCTGCACCTCCACCGCCTGGGAATGTACTTCACAA 478
consensus_15136#2 GGCTGGATGCCAAGC-ACAAGACCGTGCGAGCAAGCTGTTCTGGCGAACTCTGTCATCAT 359
consensus_15136#1 TATACAATTCTGGAACANTGGATTCACTGGAGATGATGGTCCGCTGAGGGACTATGATGA 527
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 TATACAATTCTGGAACAATGGATTCACTGTAGATGATGGTCCGCTGAGGGACTATGATGA 538
consensus_15136#2 TCAGAAGATGTAGCCTAGGGCGCACGTCTCATATGGCTATCTTTGGAAACAAGAACCCGG 419
consensus_15136#1 T--CCTGCNATTGCTTGATTCATTGAGAGCCATCAGAAGTCC-AGTGCCCCCAGAGTT-- 582
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 T--CCTGCAAATGCTGATTTCATTGAGAGCATCAAGAAGTCCCAGTGCCCCCAGGAGTTG 596
consensus_15136#2 TGTCCTTAAATTGGTCGATTATCATCCAGATACTGGTACTGGAATACATTCTGGCATGCG 479
consensus_15136#1 GACCCAGCTGATNGA-GAACACCGGTC-------ATGTGATGTATCNACGACTGANGACT 634
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 GAGCCAGCTGATAGAAGAACACCTGTTCATGTGAATGTTATCAAACGACTGGAAGACTAT 656
consensus_15136#2 AACCAGACTGCTGGTTTCATCGACAGACAGACGATAACGATACCATGTCGGTTTTTAAGT 539
consensus_15136#1 ATAGCTCTTTAGG--CCTCATACTTTCAGGTGTGAAGACCTNNGTGGACTCTGAAAGAAG 692
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 CAGGCTCCTCTAA--GGCCTCCATCACCCTTCCAGGGTGTTGGAAGAACCCTTGGTGGTG 714
consensus_15136#2 GGCATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATGAAAAAAAAAAAAAA 599
consensus_15136#1 CAGACAGTCTGCTTAGAACCCGAGCCGTGGATATTGCCATGGTCATACTCATAGTAGGTG 752
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 GATCTTCTGCAGAAGAGAGCCAGGCACCAGCTCCTGCCACTCAAGAACCCCGCAGGTCCG 774
consensus_15136#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA---------------- 643
consensus_15136#1 CAGGCCTCAGTGCCTGACTCCCAGCGCCACCGGGGATGCTTTCCGGTCGGGGGGTAGCAT 812
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 TTGGAAT-AGTTGTGGACGACTCGCTCCCATTTACATCCATACAGCTAAGGCTGGCCGAT 833
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 TGTAAGTGCCCAAAGAGAACTCGAACTGATTGGTGGGTGTTGATAAAGA--GGGCCGTTA 870
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 GGCACTCGCATGGTTGCCCGTTTCAACATGCACCACACGGTGGGCGACATCAGGTCTTTC 893
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 AACGTTGTATCGATTTCG------------------------------------------ 888
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 ATCGACGCCTCTCGGCCTGGGGCTACAAGGCCCTATCAGCTGCAGACTGGTTTCCCGCCG 953
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 ------------------------------------------------------------
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 AAGCAGCTGGCTGATCCAGCACAGACCGTCGAGCAAGCTGGTCTGGCGAACTCTGTCATC 1013
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 ------------------------------------------------------------
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 ATTCAGAAGATGTAGGCCTAGGGGCACGTCTCATATGCTATCTTTGAAACAAGAACCCGG 1073
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 ------------------------------------------------------------
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 TGTCCTTAAATTGTCGATTATCATGCCAGATACTGTACTGGAATACATTCTGCATCGAAC 1133
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 ------------------------------------------------------------
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 CAGACTGCTGGTTTCATCGACAGACAGACGATAACAATAGCCATGTCGGTTTTTAAGTGG 1193
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 ------------------------------------------------------------
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 CATCAGTGAAGTTCATAATCCTATTAATAGTAATTACCTGAATTGCAACAAAAAGTCGTG 1253
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 ------------------------------------------------------------
consensus_15136#3 ------------------------------------------------------------
consensus_15136#0 CCTCAATTTGATCCTGACTAATTGTTGCTTGAAAAGCTGTTAACTGTTCATCGAGATATA 1313
consensus_15136#2 ------------------------------------------------------------
consensus_15136#1 ------------------------------
consensus_15136#3 ------------------------------
consensus_15136#0 TCATCAAATCATTCGTGTTCATTTCAAAAA 1343
consensus_15136#2 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||