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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 833 fasta sequence
[CGCCTCTATTTGCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA-G-GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC-TGGCCAGAGCCCGA-CCGCG-TGGGGAGGCAGGAG-CT-C-GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA-TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC-GCATCTTCTACTACCTCGTCCAGGATCTGAAAT-GT-TTCGTGTTTTCACTCATCAATCTCCACTTC-AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG-GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT-GTTGTTGGA-TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTACTCCAAGGAGTCTCTCCCTGAAGTAGCA]
[+] EMBL AF338343 [CGCCTCTATTTGCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGATTTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTT ]
[+] EMBL OSS2673A [ GCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGNG CGCCGGCGA GNGACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTNCGAGATTATGAAGGAGGACGACAACAACTTNGCCAGAGCCCGA CCGCGTTGGGGAGGCAGGA ]
[+] EMBL CB646953 [ CGACCCGCCAACCACGAACAGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTT ]
[-] EMBL CB646954 [ AGAGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTTTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTT ]
[+] EMBL AK121477 [ AGGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCCCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTG ]
[+] EMBL AK063847 [ GGCGGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTACTCCAAGGAGTCTCTCCCTGAAGTAGCA]
[+] EMBL OSC04001 [ GGCGCTGCAAAATCTCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGAG CGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTNCG GA GCCCGGAGGATCATCCAGGAGTNCGAGATTATGAAG ]
[+] EMBL AU070267 [ TCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGA G GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCCGGCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTCAAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTANCCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGGTTGTTGGA TTGNGCAAG TTTG ]
[+] EMBL C74220 [ TCGCGACCAAGCGGCGGCGGCGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGCGCCGCCGGCGANG GACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAANGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTTCGAGATTATGAAGGAGGACGACAACAACTTGGCCAGAGCNCGA CGCG TTGGGAGGCAGGAG CTCC GAGATTNTTATGGGCAACGAGCACATNTTCTTTAACAACTCCAAAATTTGGCTCCTTCGTNGAgttt ]
[+] EMBL CA764297 [ GCACGAGTCCCTCGAGTTCGAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTTTGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCT ]
[+] EMBL AU091350 [ CTACAAGAACGACACCATGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTATGAAGGAGGACGACAACAAC TGGCCAGAGCCCGA CCGCG TGGGGAGGCAGGAG CT C GAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAAT GT TTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTG GTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATT GTTGTTGGA TTGTGCAAaaaaaa ]
[+] EMBL AU097162 [ t TGGCCAGANCCCGACCCGCGTTGGGGAGTCAGGAGNCTNCTGAGATTGTTATGGGCAACGAGCATATCTCCTTCACCACCTCCAAGA TTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCC GCATCTTCTACTACCTCGTCCAGGATCTGAAATCGTCTTCGTGTTTTCACTCATCAATCTCCACTTC AAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGNGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTCGTTGTTGGA TTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTAaa ]
consensusID : consensus_15139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 704 fasta sequence
[AATGGCGACGGTGGCCGGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTGGAGTTCGA-GTTCCGG-CCCGACGGGAAGCTCCGGTACGCCAACAACT-CCAACTACAAGAAGGACACCATGAT-CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC-CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGC-TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC-AAGCCCA-TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTT-AGAGAGCTCAGTACAATGTATGATCTGATCCAGTGAGTTAA-CCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAATCTTC-AGACTCTGTTGCCTGGGATTGTTGTTGGATTGTGCAAACTTCGGGTGCTCATTACTCAAGTAGTGATATTTATGCTTCTTTAAAAAAAAAAAAAAAAAA]
[+] EMBL CF291311 [AATGGCGACGGTGGCCGGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTGGAGTTCGA GTTCCGG CCCGACGGGAAGCTCCGGTACGCCAACAACT CCAACTACAAGAAGGACACCATGAT CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTT AGAGAGCTCAGTACAATGTATGATCTGATCCAGTGAGTTAA CCCTGATGACTTTTGGGTGGGTTt ]
[+] EMBL BI797342 [ aAAGTTC GGCACGAGTTTCTGGAGTTCGAGGTTCCGG CCCGACGGGAAGCTCCGGTACGCCAACAACT CCAACTACAAGAAGGACACCATGAT CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGA GCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTGTGGTCAGTGTT AGAGAGCTCTGTACAATGTATGATCTGATCCAGTGAGTTAACCCCTGATGACTTTT GGT GTTTGTGGACATTGAGGGTGGAAATCTTCAAGACT ]
[+] EMBL AU100960 [ CGGNCACGAGTTCCTGGAGTTCGA GTTCCGGCCCCGACGGGAAGNTCCGGTACGCCAACAACTCCCAACTACAAGAAGGACACCATGATCCCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTT AGAGAGCTCAGTACAATGTATGATCTGATCCAGTGAGTTAA CCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAATCTTC AGACTCTGTTGCCTGGGATTGTTGTTGGATTGTGCAAACTTCGGGTGCTCATTACTCAAGTAGTGATATTTATGCTTCTTTAAAAAAAAAAAAAAAAAA]
[+] EMBL C28552 [ CGGGCACGAGTTCCTGGAGTTCGA GTTCCGG CCCGACGGGAAGCTCCGGTACGCCAACAACT CCAACTACAAGAAGGACACCATGAT CCGCAAGGAGGTGTTCGTCTCCCCCTCCGTCCTCCGCGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGACGAACGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAGTGCTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAAGCCCATTTAAATCTTGAGCTNCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTTAAGAGAG TCAGTACAAT ]
[+] EMBL BI795286 [ CGAGGCCACCAGGATCATCCACGAATCCGAGATTATGAAGGAGGATGACAGCAACTGGCCGGAGCCAGAC CGCGTGGGAAGGCAGGAGCTGGAGATCGTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAGTGC TTCGTGTTTTCACTCATCAATCTCCACTTCAAGATC AAGCCCA TTCAATCTTGAGCTCCTTTCAGTTTCTTAATTGTATTGTGGTCAGTGTT AGAGAGCTCTGTACAATGTATGATCTGATCCAGTGAGTTAA CCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAATCTTC AGACTCTGTTGCCTGGGATTGTTGTTGaaaaaaaa ]
consensusID : consensus_15139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 599 fasta sequence
[CGACGGCAAGCTCCNTACGCCAACAACTCCAACTACAAGAACGACNCCNTGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTTATGAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAATGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCNGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTNGTGATATTTATTATTGTGAAATCTTTTTCTNCTCCAAAAAAAAAAAAAAAAAA]
[+] EMBL C98030 [CGACGGCAAGCTCCNTACGCCAACAACTCCAACTACAAGAACGACNCCNTGATCCGCAAGGAGGTCTTCGTCTCCCCCTCCGTCCTCCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTTATGAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTGTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTCCAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAATGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCNGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTNGTGATATTTATTATTGTGAAATCTTTTTCTNCTCCAAAAAAAAAAAAAA ]
[+] EMBL AU030435 [ cgCGACGTCCAGACCAGCAGGGCCCCTGAGGNCCTCCGCATCTTCTACTNCCTCGTCCAGGATCTGAAATGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCTCCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATGATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGTGATATTTATTATTGTGAAATCTTTTTCTAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15139#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence
[AAGCGGCGGCGGNAGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGNGCGCCGGCAAGGNACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGATTTCCTCGAGTTCNAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGAGGTCTTCGTNTCCCCCTCCGTCCTCCGCNAGCCCGGAGGATCATCCAGGAGTCCGAGATTATAAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTNTTATGGGAACGAGCACATNTCTTAACACCTCCAAGATTGGNTCCTTGTCGACGTCAGACCAGAAAGACCTTAGGGCTCCGATCTTTTATACTCGTCAGGTC]
[+] EMBL AU069298 [AAGCGGCGGCGGNAGGCGGGAGAGAACGAGAGGTGACCGATGGCGACGGGCGGNGCGCCGGCAAGGNACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGTGGGGCACAAGGGGAAGTTCGGGCACGATTTCCTCGAGTTCNAGTTCCGCCCCGACGGCAAGCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGAGGTCTTCGTNTCCCCCTCCGTCCTCCGCNAGCCCGGAGGATCATCCAGGAGTCCGAGATTATAAAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATTNTTATGGGAACGAGCACATNTCTTAACACCTCCAAGATTGGNTCCTTGTCGACGTCAGACCAGAAAGACCTTAGGGCTCCGATCTTTTATACTCGTCAGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15139#0 CGCCTCTATTTGCGTTGCGAGGCGACGACGTGCCAACCACGAACAGAGGCGGCGCTGCAA 60
consensus_15139#3 ------------------------------------------------------------
consensus_15139#1 ------------------------------------------------------------
consensus_15139#2 ------------------------------------------------------------
consensus_15139#0 AATCTCGCGACCAAGCGGCGGCGGC-GGCGGGAGAGAACGAGAGGTGACCGATGGCGACG 119
consensus_15139#3 ------------AAGCGGCGGCGGNAGGCGGGAGAGAACGAGAGGTGACCGATGGCGACG 48
consensus_15139#1 ---------------------------------------------------------AAT 3
consensus_15139#2 ------------------------------------------------------------
consensus_15139#0 GGCGGCGCCGCCGGCGAGGA-CGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGT 178
consensus_15139#3 GGCGGNGC-GCCGGCAAGGNACGTCCCCGGCGGCGGCGAGTTCTACCTGCGGTACTACGT 107
consensus_15139#1 GGCGACGGTGGCCGGCGACGATGGCGGCGGCGGCGGTGAGTTCTACCTGCGGTACTACGT 63
consensus_15139#2 ------------------------------------------------------------
consensus_15139#0 GGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTCGAGTTCGAGTTCCGCCCCGACGGCAA 238
consensus_15139#3 GGGGCACAAGGGGAAGTTCGGGCACGATTTCCTCGAGTTCNAGTTCCGCCCCGACGGCAA 167
consensus_15139#1 GGGGCACAAGGGGAAGTTCGGGCACGAGTTCCTGGAGTTCGAGTTCCGGCCCGACGGGAA 123
consensus_15139#2 ---------------------------------------------------CGACGGCAA 9
****** **
consensus_15139#0 GCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAGGAGGTCTT 298
consensus_15139#3 GCTCCGCTACGCCAACAACTCCAACTACAAGAACGACACCATGATCCGCAAG-AGGTCTT 226
consensus_15139#1 GCTCCGGTACGCCAACAACTCCAACTACAAGAAGGACACCATGATCCGCAAGGAGGTGTT 183
consensus_15139#2 GCTCCN-TACGCCAACAACTCCAACTACAAGAACGACNCCNTGATCCGCAAGGAGGTCTT 68
***** ************************** *** ** *********** **** **
consensus_15139#0 CGTCTCCCCCTCCGTCCTCC-GCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATT-ATG 356
consensus_15139#3 CGTNTCCCCCTCCGTCCTCC-GCNAG-CCCGGAGGATCATCCAGGAGTCCGAGATT-ATA 283
consensus_15139#1 CGTCTCCCCCTCCGTCCTCC-GCGAGGCCACCAGGATCATCCACGAATCCGAGATT-ATG 241
consensus_15139#2 CGTCTCCCCCTCCGTCCTCCCGCGAGGCCCGGAGGATCATCCAGGAGTCCGAGATTTATG 128
*** **************** ** ** ** *********** ** ********* **
consensus_15139#0 AAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCGTGGGGAGGCAGGAGCTCGAGATT 416
consensus_15139#3 AAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATT 343
consensus_15139#1 AAGGAGGATGACAGCAACTGGCCGGAGCCAGACCGCGTGGGAAGGCAGGAGCTGGAGATC 301
consensus_15139#2 AAGGAGGACGACAACAACTGGCCAGAGCCCGACCGCTTGGGGAGGCAGGAGCTCGAGATT 188
******** **** ********* ***** ****** **** *********** *****
consensus_15139#0 GTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTC 476
consensus_15139#3 NTTATGGG-AACGAGCACATNTC--TTAACACCTCCAAGATTGGNTCCTT-GTCGACGTC 399
consensus_15139#1 GTGATGGGGAACGAGCACATCTCCTTCACCACCTCCAAGATCGGCTCCCTCGTCGACGTC 361
consensus_15139#2 GTTATGGGCAACGAGCACATCTCCTTCACCACCTCCAAGATTGGCTCCCTCGTCGACGTC 248
* ***** *********** ** * * ************ ** *** * *********
consensus_15139#0 CAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAA 536
consensus_15139#3 -AGACCAG-AAAGACCTTAGGG--CTCCG-ATCTTTTATA--CTCGTC--AGGTC----- 445
consensus_15139#1 CAGACCAGCAAGGACCCCGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTTAAG 421
consensus_15139#2 CAGACCAGCAAGGACCCTGAGGGCCTCCGCATCTTCTACTACCTCGTCCAGGATCTGAAA 308
******* ** **** ** ***** ***** ** ****** * **
consensus_15139#0 TGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCT 596
consensus_15139#3 ------------------------------------------------------------
consensus_15139#1 TGCTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCCATTCAATCTTGAGCT 481
consensus_15139#2 TGTTTCGTGTTTTCACTCATCAATCTCCACTTCAAGATCAAGCCTATTCAATCTTGAGCT 368
consensus_15139#0 CCTTTCAGTCTCTTAATTGTGTTATGGCCAGTTTTAGAGAATTCTGTATTATTATGTATG 656
consensus_15139#3 ------------------------------------------------------------
consensus_15139#1 CCTTTCAGTTTCTTAATTGTATTATGGTCAGTGTTAGAGAGCTCAGTACAATGTATGATC 541
consensus_15139#2 CCTTTCAGTCTCTTAATTGTGTTATGGCCNGTTTTAGAGAATTCTGTATTAT-TATG-TA 426
consensus_15139#0 ATCCAGCGGGTTAACCATGGTGGTGGGGTGTTTGTGGAACAGAGGGTGGAATCTTAATAC 716
consensus_15139#3 ------------------------------------------------------------
consensus_15139#1 TGATCCAGTGAGTTAACCCTGATGACTTTTGGGTGGTTTGTGGACATTGAGGGTGGAAAT 601
consensus_15139#2 TGATCCAGCGGGTTAACCATGGTGG----TGGGGTGTTTGTGGA-ACAGAGGGTGGAA-T 480
consensus_15139#0 TTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACTCAAGTAGT 776
consensus_15139#3 ------------------------------------------------------------
consensus_15139#1 CTTCAGACTCTGTTGCCTGGGATTGTTGTTGGATTGTGCAAACTTCGGGTGCTCATTACT 661
consensus_15139#2 CTTAATACTTTGGTGCCTGGGATTGTTGTTGGATTGTGCAAGCTTTGGGTGCTCGTTACT 540
consensus_15139#0 GATATTTATTATTGTGAAATCTTTTTCTACTCCAAGGAGTCTCTCCCTGAAGTAGCA-- 833
consensus_15139#3 -----------------------------------------------------------
consensus_15139#1 CAAGTAGTGATATTTATG----------------CTTCTTTAAAAAAAAAAAAAAAAAA 704
consensus_15139#2 CAAGTNGTGATATTTATTATTGTGAAATCTTTTTCTNCTCCAAAAAAAAAAAAAAAAAA 599
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||