cluster # 15148

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Oryza sativa
cluster # 15148 cluster # 15148 Sequences # 20 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15148#0 length = 646 sequences # 7
consensus_15148#1 length = 518 sequences # 11

consensus_15148#2 length = 264 sequences # 1
consensus_15148#3 length = 236 sequences # 1

consensusID : consensus_15148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 646
fasta sequence

                              [CCGGTCGCGTACCCGCAGGTCGTGCGCCCGCCGCCGGGGCAGATGCCGCCGCCCATGCGGCCGCCGCAGATGCCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGAGGCCAGGGATGCCGCCTCCGCCCTTCAGGCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACTCGACTACTCGTCTTGTGTTTTTTGATATCCAGCATAATTTACTTGAGCTCGTCAATTGCTTTGCTTGCTTGAAAAAAAAAAAAAAAAAACTCGA]

[+] EMBL AK109573             [CCGGTCGCGTACCCGCAGGTCGTGCGCCCGCCGCCGGGGCAGATGCCGCCGCCCATGCGGCCGCCGCAGATGCCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGAGGCCAGGGATGCCGCCTCCGCCCTTCAGGCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCTTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACTCGACTACTCGTCTTGTGTTTTTTGATATCCAGCATAATTAACT                                                   ]
[+] EMBL CB966077             [                                                                       GCCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGAGGCCAGGGATGCCGCCTCCGCCCTTCAGGCCTGGGATGCCACC                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CB965406             [                                                                        CCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGAGGCCAGGGATGCCGCCTCCGCCCTTCAGGCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTAGGATAGCCAGTTACATCGTGTGTCCTGATAGCTGATGAACTCGAATACTCcc                                                                                   ]
[+] EMBL CB965396             [                                                                        CCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGAGGCCAGGGATGCCGCCTCCGCCCTTCAGGCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGGAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTAC                                                                                               ]
[+] EMBL BI305415             [                                                                         CGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGAGGCCAGGGATGCCGCCTCCGCCCTTCAGGCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACTCGACTACT                                                                                      ]
[-] EMBL CA757449             [                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACTCGACTACTCGTCTTGTGTTTTTTGATATCCAGCATAATTTACTTGAGCTCGTCAATTGCTTTGCTTGCTTGAAAAAAAAAAAAAAAAAACTCGA]
[-] EMBL CA757912             [                                                                                                                                                                                                                                                                                                                                                                                                                  TTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTTTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACTCGACTACTCGTCTTGTGTTTTTTGATATCCAGCATAATTTACTTGAGCTCGTCAATTGCTTTGCTTGCTTGAAAAAAAAAAAAAAAAAACTCGA]




>consensus_15148#0
CCGGTCGCGTACCCGCAGGTCGTGCGCCCGCCGCCGGGGCAGATGCCGCCGCCCATGCGG
CCGCCGCAGATGCCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGT
GGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAG
GTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGAGGCCAGGGATGCCGCCTCCG
CCCTTCAGGCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCT
CCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCAC
CGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCT
CAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGG
ACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCTGAT
AGCTGTTGTACTCGACTACTCGTCTTGTGTTTTTTGATATCCAGCATAATTTACTTGAGC
TCGTCAATTGCTTTGCTTGCTTGAAAAAAAAAAAAAAAAAACTCGA

consensusID : consensus_15148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 518
fasta sequence

                              [CTAGATTA-CTC-CT-AAGGGAATAGC-TGCGG-C-GCGCAGATGCCGATCCCGTTCCAGCGCCCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA-G-GCCAGGGATGCCGCCTCCGCCCTTCAG-GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCT-GATAGCTGTTGTACT]

[+] EMBL CB965551             [CTAGATTA CTC CT AAGGGAATA C CGCGG T TCGCAGATG CGATCCCG TCCAGCGCCCGCGGGCGTGCC CCGGCGTT TCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTC                            ]
[+] EMBL BU673096             [    ATTACCTCACTAAAGGGAATAGC TGC G C GCGCAGATGCCGATCCCGTTCCAGCGCCCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCT GATAGCTGTTGTAC ]
[+] EMBL BU673421             [                   GGAATAGC TGCGGTC GCGCAGATGCCGATCCCGTTCCAGCG CCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCG CTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGTATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCT GATAGCTGTTGTAC ]
[+] EMBL CB964928             [                    GAATAGC TGCGG CTGCGCAGATGCCGATCCCGTTCCAGCGCCCGCGGGCGTG CACCGGCGTTCCCTGGTGGCCCTCCGCCG CTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGGATGCCGCCTCCGCCCTTCAGTGCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCT GATAGCTGTTGTAC ]
[+] EMBL CB966670             [                     ataAGCTTGCGG C GCGCAGATG CGATCCCG TCCAGCGCCCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA GNGCCA GGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCT GATAGCTGTTGTAC ]
[+] EMBL CB966883             [                                  C GCGCAGATG CGATCCCGTTCCAGCGCCCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCT GATAGCTGTTGTAC ]
[+] EMBL CB964600             [                                  C GCGCA AT CCGA CCCGTT CAGCGCCCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATTGGCCCGCCGCAGGT AGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACA                                                                                                                                                             ]
[+] EMBL CB966402             [                                          ATGCCGATCCCGTTCCAGCG CCGCGGGCGTGCCACCGGCGTACCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGCGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTCCT GATAGCTGTTGTAC ]
[+] EMBL CB966477             [                                              CGATCCCGTTCCAGCGCCCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGACG GCCA GGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCG                                                                              ]
[+] EMBL CB966890             [                                               GATCCCGTTCCAGCGCCCGCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGGGGATGA G GCCAGGGATGCCGCCTCCGCCCTTCAG GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCCCTCTTGTCTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGATAGCCTGTTTCATCGTGTGTTCTGGTTAG TGGTGgtct]
[+] EMBL CB967100             [                                                                                                                              GACCACCG CG TGG  CCG CGC GGTGAGG CT GGATGCCT GAGGACCG CGC  GGGATGA G GC   GGATGCCG CTCCGCCCTTC G GCCTGGGATGCCACCGCCGCCTCCCGGTCCGCAGCAACCTGGACAAAA CCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACCAACTATGGAAGA TCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTACGGACTTGGATAGCCTGTTTCATCGTGTGTCCT GATAGCTGTTGTAC ]




>consensus_15148#1
CTAGATTACTCCTAAGGGAATAGCTGCGGCGCGCAGATGCCGATCCCGTTCCAGCGCCCG
CGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGG
GACCACCGCCGATGGGCCCGCCGCAGGTGAGGCCTGGGATGCCTGGAGGACCGCCGCCGG
GGATGAGGCCAGGGATGCCGCCTCCGCCCTTCAGGCCTGGGATGCCACCGCCGCCTCCCG
GTCCGCAGCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTGCTATACC
AACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATTGGGGTTA
CAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATTATCAGTG
GAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGGACTTGGA
TAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACT

consensusID : consensus_15148#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 264
fasta sequence

                              [CCGATCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTTGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGTGGGACCACCTGCCTGATGGGCCCTGCCGCAGTGTGATGTGCCTTGGGATGCCTTGGATGGACCTGCCTGCCTGGTGGACTGAGTGCCATGTGCATGCCTGCCTCCTGCCGCTTCAGTGGCCTGGTGATTGCCACCTGCCTGCCCTCCCTGTGTCCTGCATGCAACCATGTGACAATAACCCATC]

[+] EMBL CB965407             [CCGATCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTTGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGTGGGACCACCTGCCTGATGGGCCCTGCCGCAGTGTGATGTGCCTTGGGATGCCTTGGATGGACCTGCCTGCCTGGTGGACTGAGTGCCATGTGCATGCCTGCCTCCTGCCGCTTCAGTGGCCTGGTGATTGCCACCTGCCTGCCCTCCCTGTGTCCTGCATGCAACCATGTGACAATAACCCATC]




>consensus_15148#2
CCGATCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTTGTGGCCCTCCGCCGC
CTCCTGGCCCGTTCATGAGTGGGACCACCTGCCTGATGGGCCCTGCCGCAGTGTGATGTG
CCTTGGGATGCCTTGGATGGACCTGCCTGCCTGGTGGACTGAGTGCCATGTGCATGCCTG
CCTCCTGCCGCTTCAGTGGCCTGGTGATTGCCACCTGCCTGCCCTCCCTGTGTCCTGCAT
GCAACCATGTGACAATAACCCATC

consensusID : consensus_15148#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 236
fasta sequence

                              [CCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGACGGGGACCCACCGCCGACTGGGCCCGCCGCACGGTGACGGCCTGGGACTGCCTGGACGGACCGCCCGCCGGGGACTGCGGCCAGGGACTGCCTGCCTCCTGCCCTTCAGTGCCTGGGACTGCCACCCGCCTGCCTCCCGTGTCCGCACGCAACCCTG]

[+] EMBL CB965630             [CCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCGCCTCCTGGCCCGTTCATGACGGGGACCCACCGCCGACTGGGCCCGCCGCACGGTGACGGCCTGGGACTGCCTGGACGGACCGCCCGCCGGGGACTGCGGCCAGGGACTGCCTGCCTCCTGCCCTTCAGTGCCTGGGACTGCCACCCGCCTGCCTCCCGTGTCCGCACGCAACCCTG]




>consensus_15148#3
CCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGGTGGCCCTCCGCCG
CCTCCTGGCCCGTTCATGACGGGGACCCACCGCCGACTGGGCCCGCCGCACGGTGACGGC
CTGGGACTGCCTGGACGGACCGCCCGCCGGGGACTGCGGCCAGGGACTGCCTGCCTCCTG
CCCTTCAGTGCCTGGGACTGCCACCCGCCTGCCTCCCGTGTCCGCACGCAACCCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15148#0      CCGGTCGCGTACCCGCAGGTCGTGCGCCCGCCGCCGGGGCAGATGCCGCCGCCCATGCGG 60
consensus_15148#1      ----------------------------------CTAGATTACTCCTAAGGGAATAGCTG 26
consensus_15148#3      ------------------------------------------------------------
consensus_15148#2      ------------------------------------------------------------
                                                                                   

consensus_15148#0      CCGC-CGCAGATGCCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGG 119
consensus_15148#1      CGGCGCGCAGATGCCGATCCCGTTCCAGCGCCCGC-GGGCGTGCCACCGGCGTTCCCTGG 85
consensus_15148#3      -------------CCGATCCCGTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTGG 47
consensus_15148#2      -------------CCGATCC-GTTCCAGCGCCCGCCGGGCGTGCCACCGGCGTTCCCTTG 46
                                    ******* ************** ********************** *

consensus_15148#0      TGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGA--CCACCGCCGA-TGGGCCC-GC 175
consensus_15148#1      TGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGGGGA--CCACCGCCGA-TGGGCCC-GC 141
consensus_15148#3      TGGCCCTCCGCCGCCTCCTGGCCCGTTCATGACGGGGACCCACCGCCGACTGGGCCC-GC 106
consensus_15148#2      TGGCCCTCCGCCGCCTCCTGGCCCGTTCATGAGTGGGACCACCTGCCTGATGGGCCCTGC 106
                       ********************************  **   *  * ***   ******* **

consensus_15148#0      CGCA-GGTGA-G-GCCTGGGA-TGCCT-GGA-GGACC-GCC-GCCGGG--GA-TGAG-GC 223
consensus_15148#1      CGCA-GGTGA-G-GCCTGGGA-TGCCT-GGA-GGACC-GCC-GCCGGG--GA-TGAG-GC 189
consensus_15148#3      CGCACGGTGACG-GCCTGGGACTGCCT-GGACGGACC-GCCCGCCGGG--GACTGCG-GC 160
consensus_15148#2      CGCAGTGTGATGTGCCTTGGGATGCCTTGGATGGACCTGCCTGCCTGGTGGACTGAGTGC 166
                       ****  **** * **** **  ***** *** ***** *** *** **  ** ** * **

consensus_15148#0      CAGGGA--TGCC-GCCTCC-GCC-CTTCAG--GCCTGG-GA-TGCCACCG--CCGCCTCC 272
consensus_15148#1      CAGGGA--TGCC-GCCTCC-GCC-CTTCAG--GCCTGG-GA-TGCCACCG--CCGCCTCC 238
consensus_15148#3      CAGGGAC-TGCCTGCCTCCTGCC-CTTCAGT-GCCTGG-GACTGCCACCCGCCTGCCTCC 216
consensus_15148#2      CATGTGCATGCCTGCCTCCTGCCGCTTCAGTGGCCTGGTGATTGCCACCTGCCTGCCCTC 226
                       ** *    **** ****** *** ******  ****** ** *******   * ***  *

consensus_15148#0      CG-GT---CCGCA-GCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTG 327
consensus_15148#1      CG-GT---CCGCA-GCAACCTGGACAAAACCCTCCGCAATAGCTTTGCTGGTTGTTCTTG 293
consensus_15148#3      CGTGT---CCGCACGCAACCCTG------------------------------------- 236
consensus_15148#2      CCTGTGTCCTGCATGCAACCATGTGACAATAACCCATC---------------------- 264
                       *  **   * *** ******  *                                     

consensus_15148#0      CTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATT 387
consensus_15148#1      CTATACCAACTATGGAAGATTCACCGGTGCCACCGTTGCTTCACTGTTCTATCTCATATT 353
consensus_15148#3      ------------------------------------------------------------
consensus_15148#2      ------------------------------------------------------------
                                                                                   

consensus_15148#0      GGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATT 447
consensus_15148#1      GGGGTTACAAGTAGTTTTCTTGCGGTATCAGCTCAGAGAAGAGATATTAATCCTTTTATT 413
consensus_15148#3      ------------------------------------------------------------
consensus_15148#2      ------------------------------------------------------------
                                                                                   

consensus_15148#0      ATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGG 507
consensus_15148#1      ATCAGTGGAGCACTCTTGTTTCTATGCGAGGGGACTGTACGTAGATGTTAAGAGTTAGGG 473
consensus_15148#3      ------------------------------------------------------------
consensus_15148#2      ------------------------------------------------------------
                                                                                   

consensus_15148#0      ACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACTCGACTACTCGTCTTG 567
consensus_15148#1      ACTTGGATAGCCTGTTTCATCGTGTGTCCTGATAGCTGTTGTACT--------------- 518
consensus_15148#3      ------------------------------------------------------------
consensus_15148#2      ------------------------------------------------------------
                                                                                   

consensus_15148#0      TGTTTTTTGATATCCAGCATAATTTACTTGAGCTCGTCAATTGCTTTGCTTGCTTGAAAA 627
consensus_15148#1      ------------------------------------------------------------
consensus_15148#3      ------------------------------------------------------------
consensus_15148#2      ------------------------------------------------------------
                                                                                   

consensus_15148#0      AAAAAAAAAAAAAACTCGA 646
consensus_15148#1      -------------------
consensus_15148#3      -------------------
consensus_15148#2      -------------------