These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1319 fasta sequence [CTTGCTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC-TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG-GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAGCTATAAGCAAAGTTCAAAA] [+] EMBL AK121818 [CTTGCTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACT CGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATG ] [+] EMBL AK060318 [ CTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATG ] [+] EMBL OSC29222 [ CTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGNGCCGCC CCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGNCGCCCACCGGCCTCCACCGNGNCCGTGTCGNTCCCCGTNATCGACCTCTCCGGCCCNCACNACGTCG ] [+] EMBL CB661729 [ TGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGG ] [+] EMBL CB671507 [ GATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCC ] [+] EMBL CB641601 [ GGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTC ] [+] EMBL CA753907 [ GTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACNAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACG ] [-] EMBL CB641602 [ GAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAAT ] [-] EMBL AU057711 [ CGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATC ] [+] EMBL BI810870 [ CCACGACGCCTTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTG ] [-] EMBL CF311319 [ CC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGATCGGAGTGCTCAAGAGCATCGAGCACAGGGCGATGACGAACTCGTCGGTGGCGAGTACGTCGGTGGCGACGTTCATGATGCCTCCTATGGAATGCCTCGTCGGACCGGCAAAGGAGCTTGTCGGAGTCGGCGGCCACCCGCAGTATCGCACCGTCACGTTCCGGGAGTTCATGCGCATCTACAAGACTGTCGGCGCGCACCGCGACAGCGTAGAGAAGGCCTTCAAAATCTGATCCTGACAGCGAGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTTGTAAGATGAAGCTGATTATTCGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTTCATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATGTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAa ] [-] EMBL CF312898 [ GAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGNTGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTACATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATGGATTTGATGCAAAAAA ] [+] EMBL AU029825 [ ATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATGGATTTGATGCAAATTGGCTATAAGCAAAGTTCAAAA] [+] EMBL C98991 [ AATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGNAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTTAAAATCTATAAATCTAAATNAAATGTTCAAATGGATTTGATGCAAATTGGCTATAAGCAAAGTTCNAAA] consensusID : consensus_15153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1120 fasta sequence [TTGGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACCAAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGATTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATTTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAAAAAAAAGGA] [+] EMBL CF311318 [TTGGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACCAAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGATTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAAGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTTCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCG ] [+] EMBL CF312897 [ TGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACCAAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGATTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCANGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGG ] [-] EMBL CB671508 [ GGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATTTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAAAAAAAAGGA] [-] EMBL CB661730 [ ATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATGATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAG ACCCATGAAAATCTATAAATCTAAATAAAATGTTCAAAAAAAAAAGG ] consensusID : consensus_15153#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence [GCCCTTTTAAANGGAGGGTTGGTTTTTANGGGGAAAACNGNCCCCCGGAAAAAAGGGAAAGGGCGNTTNGGNGATTTTTTCGGNCCCGGGGGGGAAAGGGGGGTTTAATTCGNAGGGGNGGNGAACCCCAACCGCTTTTTTTCCAGCACCATTNAAGGGGTTGGGGACCAGGGGNAAANGGGGGANGCCTTCCGCTTTGCCNGGGGGTTTCCCGNTNGCNGANGANACCAAAAACCAATGGCCCGGACAAGCCCNACNATTTCCGGGATGTCACGGAGAAGTTTTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGANTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTT] [+] EMBL AA753970 [GCCCTTTTAAANGGAGGGTTGGTTTTTANGGGGAAAACNGNCCCCCGGAAAAAAGGGAAAGGGCGNTTNGGNGATTTTTTCGGNCCCGGGGGGGAAAGGGGGGTTTAATTCGNAGGGGNGGNGAACCCCAACCGCTTTTTTTCCAGCACCATTNAAGGGGTTGGGGACCAGGGGNAAANGGGGGANGCCTTCCGCTTTGCCNGGGGGTTTCCCGNTNGCNGANGANACCAAAAACCAATGGCCCGGACAAGCCCNACNATTTCCGGGATGTCACGGAGAAGTTTTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGANTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTT] consensusID : consensus_15153#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [AGAGGACGAGACAAGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAATGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACCCCCTCAAAAACCTTTAAAAATCTATAAATTTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA761190 [AGAGGACGAGACAAGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAATGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACCCCCTCAAAAACCTTTAAAAATCTATAAATTTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15153#0 CTTGCTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGA 60 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 ------------------------------------------------------------ consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGA 120 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 ------------------------------------------------------------ consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 CTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCC 180 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 ---------------------------------------------------TTGGTGCCG 9 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 CGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAA 240 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 CCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAG 69 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGAT 300 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 GACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACC 129 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTC 360 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 ATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTC 189 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 CGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCA 420 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 CCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACC 249 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAA 480 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 AAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGA 309 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 CACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGC 540 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 TTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGC 369 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCC 600 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 GACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCC 429 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCC 660 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 GGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCC 489 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 TCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCAT 720 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 TCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCAT 549 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 CACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGAT 780 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 CACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGAT 609 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 CAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGC 840 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 CAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGC 669 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAG 900 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 GACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAG 729 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGA 960 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 GACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGA 789 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 GCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCG 1020 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 GCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCG 849 consensus_15153#2 ------------------------------------------------------------ consensus_15153#0 CATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATC 1080 consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 CATTTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATC 909 consensus_15153#2 -----------------GCCCTTTTAAANGGAGGGTTGGTTTTTANGGGGAAAACNGNCC 43 consensus_15153#0 CTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAG 1140 consensus_15153#3 ---AGAGGACGAGACAAGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAG 57 consensus_15153#1 CTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAG 969 consensus_15153#2 CCCGGAAAAAAGGGAAAGGGCGNTTNGGNGATTTTTTCGGNCCCGGGGGGGAAAGGGGGG 103 * * * *** * * * * * * * *** * * consensus_15153#0 CTGATTATTAGCAACCGATAAG----------TGTTTCATCAGCA--ATTATATATGTTG 1188 consensus_15153#3 CTGATTATTAGCAACCGATAAA----------TGTTTCATCAGCA--ATTATATATGTTG 105 consensus_15153#1 CTGATTATTAGCAACCGATAAG----------TGTTTCATCAGCA--ATTATATATGTTG 1017 consensus_15153#2 TTTAATTCGNAGGGGNGGNGAACCCCAACCGCTTTTTTTCCAGCACCATTNAAGGGGTTG 163 * * * * * * *** ***** *** * **** consensus_15153#0 TTGAT-----GTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGA 1243 consensus_15153#3 TTGAT-----GTACTGATTATATGTACATCGATGTAACTGTACCTGTAACCCCCTCAAAA 160 consensus_15153#1 TTGAT-----GTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGA 1072 consensus_15153#2 GGGACCAGGGGNAAANGGGGGANGCCTTCCGCTTTGCCNGGGGGTTTCCCGNTNGCNGAN 223 ** * * * * ** * * * * * * * * consensus_15153#0 ACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAT----GGATTTGATGCAAAAAA 1299 consensus_15153#3 ACCTTTAAAAATCTATAAATTTAAATAAAATGTTCAAAT----GGATTTGATGCAAAAAA 216 consensus_15153#1 ACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAA----AAAAAAGGA-------- 1120 consensus_15153#2 GANACCAAAAACCAATGG-CCCGGACAAGCCCNACNATTTCCGGGATGTCACGGAGAAGT 282 ***** * ** * ** * * * consensus_15153#0 GCTATAAGCAAAGTTCAAAA---------------------------------------- 1319 consensus_15153#3 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 236 consensus_15153#1 ------------------------------------------------------------ consensus_15153#2 TTTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGG 342 consensus_15153#0 ------------------------------------------------------------ consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 ------------------------------------------------------------ consensus_15153#2 GGCTCAGGCCGGANTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCA 402 consensus_15153#0 ------------------------------------------------------------ consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 ------------------------------------------------------------ consensus_15153#2 ACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACC 462 consensus_15153#0 ------------------------------------------------------------ consensus_15153#3 ------------------------------------------------------------ consensus_15153#1 ------------------------------------------------------------ consensus_15153#2 GCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATG 522 consensus_15153#0 ------------------------------------------------- consensus_15153#3 ------------------------------------------------- consensus_15153#1 ------------------------------------------------- consensus_15153#2 GCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTT 571 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||