These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15156#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1824 fasta sequence [GAGAGAGTGTGGG-CGCTCTTAAATAGGAGAGAAAAAGAAAACCACCGCCACCGACATCGCCTCGCCTCGTAACCCCCAAATCCAGCGCCTCCCTTCCTCCCCAATAATCGAATCCAATCCATCTTCCACGCGCATTCCGGATCCGCGGACCAAGGGAGGATGTCGTCGTCGTCGTCGCCGCCCGCCGCCTCCGCCGCCGCGAGGCTG-GATCTGGACGGCAACCCCATCGCGCCCCTCACCATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCCGAGACCGCCCACGTCGTCTACGCCGTCGACGTCTACTGCGACAAGATCCGCCACCT-CGTCGACCCCGCCCCTCCCCACCTCCATGGCCGCATCTCCTTCCACCGCCTCAACATCAAGAACGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGACGATCAACCTGGCGGCGATCTGCACGCCGGCCGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGACGCGCTCCCTGTGGTCAAGTACTGCTCTGAGAACAACAAGCGTCTCATCCACTTCTCCACGTGCGAGGTCTACGGCAAGACCATCGGCAGCTTCCTCCCCACCGACCACCCTCTCCGCAAGGAACCTGAATTTTATGTACTGAAAGAAGATGAATCCCCCTGCATTTTTGGTCCAATTGTGAAACAGCGATGGTCTTATGCATGTGCGAAGCAGCTTATTGAGAGGCTTATTTTTGCTGAAGGAGCAGAAAATGGCCTTGAGTTCACAATTGTGAGACCTTTCAATTGGATTGGACCAAGAATGGACTTTATTCCTGGTGTTGATGGTCCTAGTGAGGGTGTTCCTCGGGTTTTGGCATGTTTCAGTAACAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAGCCACCACTGGATGAACCTATGATTGACGTGAGTTCGAAGCAGTTCTATGGTGAAGGATATGATGATAGTGATAAGAGGATTCCTGACATGA-CCATAATCAACAAGCAGCTTGGTTGGAATCCGAAGACCCCTCT-CAAGGATTTGCTGGAGAC-AACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGG-AAGCTATAATGGTTGTG-AGTTAAGTTCTTTGAGTTTAGTACAGCAACTAGTAGTAGGCTGTTAGAAGCAAAATCTGCAAATTTCACTACTTGGTAGTTGTGATTCATATGACCGACTAATTTGTGGTAACTTGTTTGTTCCATGCGCAAAAAAAAAA] [+] EMBL AK070623 [GAGAGAGTGTGGG CGCTCTTAAATAGGAGAGAAAAAGAAAACCACCGCCACCGACATCGCCTCGCCTCGTAACCCCCAAATCCAGCGCCTCCCTTCCTCCCCAATAATCGAATCCAATCCATCTTCCACGCGCATTCCGGATCCGCGGACCAAGGGAGGATGTCGTCGTCGTCGTCGCCGCCCGCCGCCTCCGCCGCCGCGAGGCTG GATCTGGACGGCAACCCCATCGCGCCCCTCACCATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCCGAGACCGCCCACGTCGTCTACGCCGTCGACGTCTACTGCGACAAGATCCGCCACCT CGTCGACCCCGCCCCTCCCCACCTCCATGGCCGCATCTCCTTCCACCGCCTCAACATCAAGAACGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGACGATCAACCTGGCGGCGATCTGCACGCCGGCCGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGACGCGCTCCCTGTGGTCAAGTACTGCTCTGAGAACAACAAGCGTCTCATCCACTTCTCCACGTGCGAGGTCTACGGCAAGACCATCGGCAGCTTCCTCCCCACCGACCACCCTCTCCGCAAGGAACCTGAATTTTATGTACTGAAAGAAGATGAATCCCCCTGCATTTTTGGTCCAATTGTGAAACAGCGATGGTCTTATGCATGTGCGAAGCAGCTTATTGAGAGGCTTATTTTTGCTGAAGGAGCAGAAAATGGCCTTGAGTTCACAATTGTGAGACCTTTCAATTGGATTGGACCAAGAATGGACTTTATTCCTGGTGTTGATGGTCCTAGTGAGGGTGTTCCTCGGGTTTTGGCATGTTTCAGTAACAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAGCCACCACTGGATGAACCTATGATTGACGTGAGTTCGAAGCAGTTCTATGGTGAAGGATATGATGATAGTGATAAGAGGATTCCTGACATGA CCATAATCAACAAGCAGCTTGGTTGGAATCCGAAGACCCCTCT CAAGGATTTGCTGGAGAC AACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGG AAGCTATAATGGTTGTG AGTTAAGTTCTTTGAGTTTAGTACAGCAACTAGTAGTAGGCTGTTAGAAGCGAAATCTGCAAATTTCACTACTTGGTAGTTGTGATTCATATGACCGACTAATTTGTGGTAACTTGTTTG ] [+] EMBL AU223128 [ AGTGTGGGCCGCTCTTAANTAGGAGAGAAAAAGAAAACCACCGTCACCGACATCGCCTCGCCTCGTAACCCCCAAATCCAGCGCCTCCCTTCCTCCCCAATAATCGAATCCAATCCATCTTCCACGCGCATTCCGGATCCGNGGACCAAGGGAGGATGTCGTCGTCGTCGTCGCCGCCCGCCGCCTCCGCCGCCGCGAGGCTG GATCTGGACGGCAACCCCATCGCGCCCCTCACCATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCCGAGACCGCCCACGTCGTCTACGCCGTCGACGTCTACTGCGACAAGATCCGCCACCT CGTCGACCCCGCCCCTCCCCACCTCCATGGCCGCATCTCCTTCCACCGCCTCAACATCAAGAACGACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGA ] [+] EMBL OSS2706A [ AGTGTGGG CGCTCTTAAATAGGAGAGAAAAAGAAAACCACCGCCACCGACATCGCCTCGCCTCGTAACCCCCAAATCCAGCGCCTCCCTTCCTCCCCAATAATCGAATCCAATCCATCTTCCACGCGCATTCCGGATCCGCGGACCAAGGGAGGATGTCGTCGTCGTCGTCGCCGCCCGCCGCCTCCGNCGCCGCGAGG TGTGATCTGGACGGCAACCCCATCGCGCCCCTCACCATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCCGAGACCGTCCACGTCGTCTACGACGTCGACGTCTACTTCG ] [+] EMBL OSS3328A [ AGTGTGGG CGCTCTTAAATAGGAGAGAAAAAGAAAACCACCGCCACCGACATCGCCTCGCCTCGTAACCCCCAAATCCAGCGCCTCCCTTCCTCCCCAATAATCGAATCCAATCCATCTTCCACGCGCATTCCGGATCCGCGGACCAAGGGAGGATGTCGTCGTCGTCGTCGCCGNCCGNCGCCTCCGNCGNCGCGAGG TGTGATCTGGACGGCAACCCCATCGCGNCCCTCACCATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCCGAGACCGNCCACGTCGTCTACGNCGTCGACGTCTACTGCGACAAGATCCGCCANCTCCGTCGACCn ] [+] EMBL AU161543 [ ACCCCCAAATCCAGCGCCTCCCTTCCTCCCCAATAATCGAATCCAATCCATCTTCCACGCGCATTCCGGATCCGCGGACCAAGGGAGGATGTCGTCGTCGTCGTCGCCGCCCGCCGCCTCCGCCGCCGCGAGGTTG GATCTGGACGGCAACCCCATCGCGCCCCTCACCATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCCGAGACCGCCCACGTCGTCTACGCCGTCGACGTCTACTGCGACAAGATCCGCCACCT CGTCGACn ] [+] EMBL CA999404 [ GAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAGCCACCACTGGATGAACCTATGATTGACGTGAGTTCGAAGCAGTTCTATGGTGAAGGATATGA ] [-] EMBL BI306500 [ TTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAGCCACCACTGGATGAACCTATGATTGACGTGAGTTCGAAGCAGTTCTATGGTGAAGGATATGATGATAGTGATAAGAGGATTCCTGACATGA CCATAATCAACAAGCAGCTTGGTTGGAACCCGAAGACCCCTCT CAAGGATTTGCTGGAGAC AACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCT TAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCCCCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGG AAGCTATAATGGATGTG AGTTAAGTTCTTTGAGTTTAGTACAGCAACTAGTAGTAGGCTGTTAGAAGCAAAATCTGCAAATTTCACTACTTGGTAGTTGTGATTCATATGACCGACTA ] [+] EMBL BI805918 [ GAACCAGTTCTATGGTGAAGAATATGATGATAGTGATAAGAGGATTCCTGACATGA CCATAATCAACAAGCAGCTTGGTTGGAACCCGAAGACCCCTCT CAAGGATTTGCTGGAGACAAACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGG AAGCTAAAAa ] [+] EMBL AU161544 [ TGGTGAAGGATATGATGNTAGTGATAGGAGGATTCCTGACATGACCCATATTCAACAAGCAGCTTGGTTGGAATCCGAAGACCCCTCT CANGNATTTGCTGGAGAC AACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGG AAGCTATAATGGTTGTG AGTTAAGTTCTTTGAGTTTAGTACAGCAACTAGTAGTAGGCTGTTAGAAGCAAAATCTGCAAATTTCACTACTTGGTAGTTGTGATTCATATGACCGACTAATTTGTGGTAACTTGTTTGTTCCATGCGCAAAAAAAAAA] [+] EMBL AU101957 [ TCTNCAAGGATTTGCTGGAGAC AACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGG AAGCTNTAATGGTTGTG AGTTAAGTTCTTTGAaaaa ] [+] EMBL D42995 [ TTGCTGGAGAC AACATTGACCTACCAGNACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGNGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGNATACGNGTACTCAAGTAATCCCTTTTGTGCATCTAGTCACTNCTAGNTCCCTACCAACTTTTAGGTGTNCNCCTNTGTAAGCCNGCAAGGGGNTATn ] [+] EMBL AU223129 [ GCGTCGAGTTAGGCAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTCNAGTAATCCTTTTTGTGCATCTAGTCNCTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCCCCATATCTGTGGCANAGTCGATGTATTCNTTTGTACCNTTGGTTGCTCATCCTGTGTCATTCTTTNTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGGAAAGCTATAATGGTTGTGAAGTTAAGTTCTTTGAaaaa ] consensusID : consensus_15156#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 980 fasta sequence [TGGCATGTTTCAGTAACAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAGCCACCACTGGATGAACCTATGATTGATGTGAGTTCGAAGCAGTTCTATGGTGAAGGATATGATGATAGTGATAAGAGGATTCCTGACATGACCATAATCAACAAGCAGCTTGGTTGGAACCCGAAGACCCCTCTCAAGGATTTGCTGGAGACAACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTTAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAAAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTTAAGTAAATCTTTTTGTGCATCTAATATTCTTCTAGATACCTTCCAAACTTTAATGTTCCCTCTTGTTAATGCCTTCCAGGGGTTATTCTCCATATCTTCGCACAGCTGAATTTTTTAATGTACCTCTTGTGGATCATCTTGTGACTTCTTACTTATATATTCGTCTTCGGGGCATGTTCTTGTTTTCCTATATGTTCTTTCCTGTAAATTTGGCCCTGTTTTATTATTGTTGTCTTTTAAATTTTTTTATCTTTCTCTAATCTTCTAGTTCTTTTANTTATGTCAAATTCTAATATTATTTCTTTTATTCGGTCGTTTTTTATAACCTGTCCTTATTTGGATCTTCTTGTTTCATCTGTCTTTTATTTTAATATATCTCCTATTATTCTTTATCCTCTGGGTGTTTTTGGTACATATCCTGATATT] [+] EMBL BE040197 [TGGCATGTTTCAGTAACAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAGCCACCACTGGATGAACCTATGATTGATGTGAGTTCGAAGCAGTTCTATGGTGAAGGATATGATGATAGTGATAAGAGGATTCCTGACATGACCATAATCAACAAGCAGCTTGGTTGGAACCCGAAGACCCCTCTCAAGGATTTGCTGGAGACAACATTGACCTACCAGCACAAGACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTTAGCGTCGAGTTAGACAACACGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAAAGCACTGTCAGTGGCTATAATCGTTTGGAAGTGGAATACGTATACTTAAGTAAATCTTTTTGTGCATCTAATATTCTTCTAGATACCTTCCAAACTTTAATGTTCCCTCTTGTTAATGCCTTCCAGGGGTTATTCTCCATATCTTCGCACAGCTGAATTTTTTAATGTACCTCTTGTGGATCATCTTGTGACTTCTTACTTATATATTCGTCTTCGGGGCATGTTCTTGTTTTCCTATATGTTCTTTCCTGTAAATTTGGCCCTGTTTTATTATTGTTGTCTTTTAAATTTTTTTATCTTTCTCTAATCTTCTAGTTCTTTTANTTATGTCAAATTCTAATATTATTTCTTTTATTCGGTCGTTTTTTATAACCTGTCCTTATTTGGATCTTCTTGTTTCATCTGTCTTTTATTTTAATATATCTCCTATTATTCTTTATCCTCTGGGTGTTTTTGGTACATATCCTGATATT] [+] EMBL CA757404 [TGGCATGTTTCAGTAACAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATGATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAG ] consensusID : consensus_15156#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 302 fasta sequence [AATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGGAAGCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG] [+] EMBL CF327908 [AATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGGAAGCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCG] [-] EMBL CF327909 [ ATACGTATACTCAAGTAATCCTTTTTGGGCATTTAGTCACTCCTAGATCCCTACCAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCCCCAAATTTGTGGCAAAGTCGAGGTATTCATTTGTCCCTTTGGTTGCTCATCCTGGGTCATTTTTTTTTATTGCTTCGTCGGTGAAAAATGTTTTTGTTCAGTAAAAATGATTGTTCAAGGAAATTATGGGCTGGAAGCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_15156#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 278 fasta sequence [ATGGGCTGAAGGAGTAGAAACACCAAGGGTTTCATCCATTTTTCCACGTGGGAGGTTTACGGCAAGACCATGGGCAGTTTCTTCCCCACCGACCACCCTTTCCGCAAGGAACCTGAATTTTATGTATTGAAAGAAGATGAATCCCCCTGCATTTTGTGGTCCAATTGTGAAACAGCGATGGTTTTATGCATGTGCGAAGCATCCTTTGAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTAGCGTAT] [-] EMBL CF328961 [ATGGGCTGAAGGAGTAGAAACACCAAGGGTTTCATCCATTTTTCCACGTGGGAGGTTTACGGCAAGACCATGGGCAGTTTCTTCCCCACCGACCACCCTTTCCGCAAGGAACCTGAATTTTATGTATTGAAAGAAGATGAATCCCCCTGCATTTTGTGGTCCAATTGTGAAACAGCGATGGTTTTATGCATGTGCGAAGCATCCTTTGAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF328962 [ GTCTCATCCACTTCTCCACGTGCGAGGTCTACGGCAAGACCATCGGCAGCTTCCTCCCCACCGACCACCCTCTCCGCAAGGAACCTGAATTTTATGTACTGAAAGAAGATGAATCCCCCTGCATTTT TGGTCCAATTGTGAAACAGCGATGGTCTTATGCATGTGCGAAGCATCCTCTGAATTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTAGCGTAT] consensusID : consensus_15156#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 246 fasta sequence [TAGNTTCAACTTCCCTAGATCCCTCTACCCAACCTTTTTTCAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGGAAGCTATAATGGTTGTGAGTTAAGTTCTTTGAAA] [+] EMBL AU097267 [TAGNTTCAACTTCCCTAGATCCCTCTACCCAACCTTTTTTCAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTTCGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGGAAGCTATAATGGTTGTGAGTTAAGTTCTTTGAAA] consensusID : consensus_15156#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence [ATTTTNNCTGAAGGAGCAGAAAATGGCCTTGAGTTCACAATTGTNAGACCTTTCANTTGGNTTGGNCCAAGANTGGACTTTNTNCCTGGTGTTNANGGTCCTAGTGAGGGTNTTCCTNGGNTTTGGGCATGTTTCANTAAC] [+] EMBL D43018 [ATTTTNNCTGAAGGAGCAGAAAATGGCCTTGAGTTCACAATTGTNAGACCTTTCANTTGGNTTGGNCCAAGANTGGACTTTNTNCCTGGTGTTNANGGTCCTAGTGAGGGTNTTCCTNGGNTTTGGGCATGTTTCANTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GAGAGAGTGTGGGCGCTCTTAAATAGGAGAGAAAAAGAAAACCACCGCCACCGACATCGC 60 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ----------TGGCATGTTTCAGTAACAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTT 50 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 CTCGCCTCGTAACCCCCAAATCCAGCGCCTCCCTTCCTCCCCAATAATCGAATCCAATCC 120 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 GATGGTGGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCAC 110 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 ATCTTCCACGCGCATTCCGGATCCGCGGACCAAGGGAGGATGTCGTCGTCGTCGTCGCCG 180 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 TTGATGATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAAC 170 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 CCCGCCGCCTCCGCCGCCGCGAGGCTGGATCTGGACGGCAACCCCATCGCGCCCCTCACC 240 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 AATGAAGTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCA 230 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 ATCTGCATGATCGGCGCCGGCGGCTTCATCGGCTCCCACCTCTGCGAGAAGCTCATGGCC 300 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 GGAGAGCCACCACTGGATGAACCTATGATTGATGTGAGTTCGAAGCAGTTCTATGGTGAA 290 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GAGACCGCCCACGTCGTCTACGCCGTCGACGTCTACTGCGACAAGATCCGCCACCTCGTC 360 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 GGATATGATGATAGTGATAAGAGGATTCCTGACATGACCATAATCAACAAGCAGCTTGGT 350 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GACCCCGCCCCTCCCCACCTCCATGGCCGCATCTCCTTCCACCGCCTCAACATCAAGAAC 420 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 TGGAACCCGAAGACCCCTCTCAAGGATTTGCTGGAGACAACATTGACCTACCAGCACAAG 410 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GACTCCAGGCTCGAGGGCCTCATCAAGATGGCCGATCTGACGATCAACCTGGCGGCGATC 480 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ACTTACAAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTTAGCGTCGAGTTAGACAACA 470 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 TGCACGCCGGCCGACTACAACACGCGCCCCCTCGACACCATCTACAGCAACTTCATCGAC 540 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 CGCTCCAATCCATAGATGGTGATGTTGGCTCTTGTAAAGCACTGTCAGTGGCTATAATCG 530 consensus_15156#3 ------------ATGGGCTGAAGGAGTAGAAACACCAAGGGTTTCATCCATTTTTCCA-- 46 consensus_15156#5 -------------------------------------------------ATTTTNNCT-- 9 consensus_15156#0 GCGCTCCCTGTGGTCAAGTACTGCTCTGAGAACAACAAGCGTCTCATCCACTTCTCCA-- 598 consensus_15156#2 -----------AATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGT-CACTCCTAGA 48 consensus_15156#4 ------------------------------TAGNTTCAACTTCCCTAGA-TCCCTCTA-- 27 consensus_15156#1 TTTGGAAGTGGAATACGTATACTTAAGTAAATCTTTTTGTGCATCTAATATTCTTCTAGA 590 consensus_15156#3 ---CGTGGGAGGTTTACGGCAAGACCATGGGCAGTTTCTTCCCCA-CCGACCACCCTTTC 102 consensus_15156#5 -------GAAGGAGCAGAAAATGGCCTTGAG-------TTCACAA-TTGTNAGACCTTTC 54 consensus_15156#0 ---CGTGCGAGGTCTACGGCAAGACCATCGGCAGCTTCCTCCCCA-CCGACCACCCTCTC 654 consensus_15156#2 TCCCTACCAACTTTTAG-GTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATC 107 consensus_15156#4 -CCCAACCTTTTTTCAG-GTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATC 85 consensus_15156#1 TACCTTCCAAACTTTAATGTTCCCTCTTGTTAATGCCTTCCAGGGGTTATTCTCCATATC 650 * * * * * ** consensus_15156#3 CGCAAGGAACCTGAATTTTATGTATTGAAAGAAGATGAATCCCCCTGCAT-----TTTGT 157 consensus_15156#5 --------ANTTGGNTT----GGNCCAAGANTGGACTT-TNTNCCTGGTG-----TTNAN 96 consensus_15156#0 CGCAAGGAACCTGAATTTTATGTACTGAAAGAAGATGAATCCCCCTGCAT-----TTT-T 708 consensus_15156#2 TGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCT 167 consensus_15156#4 TGTGGCAGAGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCT 145 consensus_15156#1 T-TCGCACAGCTGAATTTTTTAAT-GTACCTCTTGTGGATCATCTTGTGAC-TTCTTACT 707 * * * * * * ** ** consensus_15156#3 GGTCCAATTGTGAAACAGCGATGGTTTTATGCATGTGCGAAGCATCCTTT---GAATTTC 214 consensus_15156#5 GGTCCTAGTGAGGGTNTTCCTNGGNTTTGGGCATGTTTCANTAAC--------------- 141 consensus_15156#0 GGTCCAATTGTGAAACAGCGATGGTCTTATGCATGTGCGAAGCAGCTTATTGAGAGGCTT 768 consensus_15156#2 TATTGCTTCGTCGGTGAGAGATGTTCTTGTTCA-GTATAGATGATTGTTCAAGGAAATTA 226 consensus_15156#4 TATTGCTTCGTCGGTGAGAGATGTTCTTGTTCA-GTATAGATGATTGTTCAAGGAAATTA 204 consensus_15156#1 TATATATTCGTCTTCGGGGCATGTTCTTGTTTT-CC-TATATGTTCTTTCCTGTAAATTT 765 * * * ** consensus_15156#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCCTGTCTTGCCGTTACGTAGC 274 consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 ATTTTTGCTGAAGGAGCAGAAAATGGCCTTGAGTTCACAATTGTGAGACCTTTCAATTGG 828 consensus_15156#2 TGGGCTGGAAGCTATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 286 consensus_15156#4 TGGGCTGGAAGCTATAATGGTTGTGAGTTAAGTTCTTTGAAA------------------ 246 consensus_15156#1 GGCCCTGTT--TTATTATTGTTGTCTTTTAAATTTTTTTATCTTTCTCTAATCTTCTAGT 823 consensus_15156#3 GTAT-------------------------------------------------------- 278 consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 ATTGGACCAAGAATGGACTTTATTCCTGGTGTTGATGGTCCTAGTGAGGGTGTTCCTCGG 888 consensus_15156#2 AACCACTGTCATGCCG-------------------------------------------- 302 consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 TCTTTTANTTATGTCAAATTCTAATATTATTTCTTTTATTCGGTCGTTTTTTATAACCTG 883 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GTTTTGGCATGTTTCAGTAACAATCTCCTGCGTCGGGAGCCCCTGAAACTTGTTGATGGT 948 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 TCCTTATTTGGATCTTCTTGTTTCATCTGTCTTTTATTTTAATATATCTCCTATTATTCT 943 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GGCCAGTCCCAGAGAACTTTTGTTTACATTAAGGATGCCATTGAAGCTGTTCACTTGATG 1008 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 TTATCCTCTGGGTGTTTTTGGTACATATCCTGATATT----------------------- 980 consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 ATTGAAAATCCTGCTCGTGCCAATGGTCAAATCTTCAATGTCGGGAATCCTAACAATGAA 1068 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GTCACTGTTAGGCAATTGGCTGAAATGATGACAGAGGTCTATGCAAATGTCTCAGGAGAG 1128 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 CCACCACTGGATGAACCTATGATTGACGTGAGTTCGAAGCAGTTCTATGGTGAAGGATAT 1188 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 GATGATAGTGATAAGAGGATTCCTGACATGACCATAATCAACAAGCAGCTTGGTTGGAAT 1248 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 CCGAAGACCCCTCTCAAGGATTTGCTGGAGACAACATTGACCTACCAGCACAAGACTTAC 1308 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 AAAGAAGCTATCAAAAGGCAAATGTCACAGGCTTCAGCGTCGAGTTAGACAACACGCTCC 1368 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 AATCCATAGATGGTGATGTTGGCTCTTGTAGAGCACTGTCAGTGGCTATAATCGTTTGGA 1428 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 AGTGGAATACGTATACTCAAGTAATCCTTTTTGTGCATCTAGTCACTCCTAGATCCCTAC 1488 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 CAACTTTTAGGTTTCCTCCTGTGTAAGCCGGCAAGGGGTTATCCACCATATCTGTGGCAG 1548 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 AGTCGATGTATTCATTTGTACCTTTGGTTGCTCATCCTGTGTCATTCTTTCTTATTGCTT 1608 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 CGTCGGTGAGAGATGTTCTTGTTCAGTATAGATGATTGTTCAAGGAAATTATGGGCTGGA 1668 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 AGCTATAATGGTTGTGAGTTAAGTTCTTTGAGTTTAGTACAGCAACTAGTAGTAGGCTGT 1728 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------------------------------ consensus_15156#5 ------------------------------------------------------------ consensus_15156#0 TAGAAGCAAAATCTGCAAATTTCACTACTTGGTAGTTGTGATTCATATGACCGACTAATT 1788 consensus_15156#2 ------------------------------------------------------------ consensus_15156#4 ------------------------------------------------------------ consensus_15156#1 ------------------------------------------------------------ consensus_15156#3 ------------------------------------ consensus_15156#5 ------------------------------------ consensus_15156#0 TGTGGTAACTTGTTTGTTCCATGCGCAAAAAAAAAA 1824 consensus_15156#2 ------------------------------------ consensus_15156#4 ------------------------------------ consensus_15156#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||