These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15164#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1844 fasta sequence [TTTTTTTTTTTTTTTTCAAGAAAGAACAGCAAACATTTTACTATCTCTGATTGAATCATGTCCATCACAACTACCTTACAGTCCAAACCTGAAAATGCAGGTGTATATGCAACAAGTTTTCTCATCTTCTCTCTAGGAATTCAGCATGATGGGACTGCATCCAGGTAAGGAGGCCATCAAACCTGCCCCTATTCAAATTATTGCAGACATAATCTTAATTCTCAAATTACCCCGGGTTCCACGACTCCAATTCACCAATCAACCAATCACTTCAATTGAACACACCCCACCCCAACCCCCGGGGTTAACTCAGCATCAGGGGCTGGCAACTCGTTAATTTTCTTTTATCCCCCTTTCCATTTCAACAGGGAACTAAATTAAATTGATCCATACGTACATGTCTGCACATGTGTAGACAACTGATGAACATTTCCGGGTTATTGAAATACCACCATTGCCCATAATTGGCTTCCCAAACACAAACTTCTTTGGTATAAAGATCGATCATCCACAGGAAGGAGAGAGCAAGCTTACAGCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAAGCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACTGAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGAGGTGGTGGCGGCGGCGGTGAGCGACGG-CGCCGA--CCACCACG-CGAAGG-AGGCGCTG-ACGCGGGTGG--CGGTG-ACG-CGGGCGGACGTGG-ACATGGACGCCATCCGCGCGGCCTACCA-CG-AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA-CCCGGCCGATCAGCCA-TTGCTCCTCCGA-TCTGTCGCCTCGCCTTGT-CA-GTGCGTCGCCA-TCGTGTACGTTGTTGCTGCTG----CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA-CTTGTAAAC-TTAGCATTTC-GCAGCAGAGCTGTTGGTATG-GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAGAGGATCGATTTCATTTGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA756371 [TTTTTTTTTTTTTTTTCAAGAAAGAACAGCAAACATTTTACTATCTCTGATTGAATCATGTCCATCACAACTACCTTACAGTCCAAACCTGAAAATGCAGGTGTATATGCAACAAGTTTTCTCATCTTCTCTCTAGGAATTCAGCATGATGGGACTGCATCCAGGTAAGGAGGCCATCAAACCTGCCCCTATTCAAATTATTGCAGACATAATCTTAATTCTCAAATTACCCCGGGTTCCACGACTCCAATTCACCAATCAACCAATCACTTCAATTGAACACACCCCACCCCAACCCCCGGGGTTAACTCAGCATCAGGGGCTGGCAACTCGTTAATTTTCTTTTATCCCCCTTTCCATTTCAACAGGGAACTAAATTAAATTGATCCATACGTACATGTCTGCACATGTGTAGACAACTGATGAACATTTCCGGGTTATTGAAATACCACCATTGCCCATAATTGGCTTCCCAAACACAAACTTCTTTGGTATAAAGATCGATCATCCACAGGAAGGAGAGAGCAAGCTTACAGCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCA ] [+] EMBL AK098879 [ AGCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAAGCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACTGAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGAGGTGGTGGCGGCGGCGGTGAGCGACGG CGCCGA CCACCACG CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTT ] [+] EMBL AK060054 [ GCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAAGCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACTGAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGAGGTGGTGGCGGCGGCGGTGAGCGACGG CGCCGA CCACCACG CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAGAGGATCGAT ] [+] EMBL AK104639 [ GCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCACCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAAGCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACTGAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGAGGTGGTGGCGGCGGCGGTGAGCGACGG CGCCGA CCACCACG CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTA ] [+] EMBL CB658022 [ GCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTNCAGCACTACAAGGAAATCCATG ] [+] EMBL CB652416 [ GCTAAGCCATTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCCCCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAAGCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGG ] [+] EMBL OSR3052A [ GCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCGGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGGGGNTCTGGCGCACCACGTG ] [+] EMBL OSR29811A [ GCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCC ] [+] EMBL BI813823 [ GAGGGA GCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGA GTGGTGGC GC GCGGTGAGCGACGG CGCCGA CCACCACG CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACGCCGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGGGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGACCCCGGCCGATCAGCCACTTGCTCCTCCGATTCTGTCGCCTCGCCTTGTCCACGTGCGTCGCCACTCGTGTACGTTGTTGTTGTTGTTGCCTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAA ] [+] EMBL CB682483 [ GCCTCGCGACGCCGGCGAGGTACTTCAGCGAGGTGGTGGCGGCGGCGGTGAGCGACGG CGCCGA CCACCACG CGAATG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACACGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAGAG ] [+] EMBL BQ909080 [ CCGGCGAGGTACTTCAGCGA GTGGT GCGGCGCCGGTGAGCGACGG CGCCGA CCACCACG CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCACCG A CAGTTCGGCGGGAGGCTGGAGGACCCCGTCGCCGGGAAGGCGCACGGCTACTACAGGGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCA CCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGTTGTTGTT CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATGCNACNAAGGTCGATTTAATTTTTCTTGAAAAAA ] [+] EMBL AU031987 [ CGACGGCCGCCGAACCCACCACGCCGAAGGAAGGCCCTGAACGCGGNTTGCCCNTTGAACC CGGGCGGACTTGGAACATGGACGCCATCCGCGCGGCCTACCA CGAAGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAGAGGATCGATTTCATTTGGGAAAAAAAAA ] [-] EMBL CB682484 [ GA CCACCACG CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGGTACTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGATAGCTTGTAATCGTTAcgc ] [-] EMBL CB658023 [ G CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTTTCGCTTGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAaaaagga ] [-] EMBL CB644037 [ G CGAAGG AGGCGCTG ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTC GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAGAGGATCGATTTCATTTGGGACAAAAAAAAAAA ] [+] EMBL AU184559 [ cccnGAAGG AGGCGCTN ACGCGGGTGG CGGTG ACG CGGGCGGACGTGG ACATGGACGCCATCCGCGCGGCCTACCA CG AGCAGTTCGGCGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTNTCGCTNGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCNTTTN GCAGCAGAGCTGTTGGTATG GAATAAGGTCGATTTAATTTTTNTTGAAAAAAAAAANAGGATCGATTTCNTTTGGGAAAAAAAAA ] [+] EMBL AU031468 [ AGGCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTNCTACAGAGACGCGCTCCTCTCGCTCGTCGCCGGCGGCAAGTGA CCCGGCCGATCAGCCA TTGCTCCTCCGA TCTGTCGCCTCGCCTTGT CA GTGCGTCGCCA TCGTGTACGTTGTTGCTGCTG CTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGA CTTGTAAAC TTAGCATTTCNGCAGCAGAGCTGTTGGTNTG GNATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAGNGGATCGATTTCATTTGGGNCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15164#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1090 fasta sequence [TAAGCCCCTAACCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCGTAAGCAATTCAACAAACACCTTGAGTGCACGTCGTCGTCGTCGCGTCGACCTCTCCCGTTGATCTTTTTCTGTGTCCCGTGTCGCGCGTGGATGCAGCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAAGCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACTGAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGATTGCTCCTCCGATCTGTCGCCTCGCCTTGTCAGTGCGTCGCCATCGTGTACGTTGTTGCTGCTGCTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGACTTGTAAACTTAGCATTTCGCAGCAGAGCTGTTGGTATGGAATAAGGTCGATTTA] [+] EMBL CB644036 [TAAGCCCCTAACCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGAGATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCAAGGCGTACCAGGCGCTGTTCCACCACTCCCTCGAGGAGGACGTCGCCTACCGCGCCAGGGACAAGCCCTACTGCGGCGTAAGCAATTCAACAAACACCTTGAGTGCACGTCGTCGTCGTCGCGTCGACCTCTCCCGTTGATCTTTTTCTGTGTCCCGTGTCGCGCGTGGATGCAGCTGCTGGTCGGGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGA ] [+] EMBL AK068231 [ GGCTGGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGCGAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAACGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAAGCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACTGAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGATTGCTCCTCCGATCTGTCGCCTCGCCTTGTCAGTGCGTCGCCATCGTGTACGTTGTTGCTGCTGCTGTTGTTGTTGTTGTGTTTTTGTTGCATGCGTGGATCGAGACTTGTAAACTTAGCATTTCGCAGCAGAGCTGTTGGTATGGAATAAGGTCGATTTA] consensusID : consensus_15164#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [ACCATTGCCCATAATTGGCTTCCCAGACACAAACTTCTTTGGTATAAAGATCGATCATCCACAGGAAGGAGAGAGCAAGCTTACAGCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGGCCTACCACGAGCAGTTCGGCGGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGGGCACGGCTACTACAGAGANGCGCTCCTCTCGCTCGTCGCCGGCGGAAGTGACCCGGCCGATCAGCCATTGCNCCTCCGATCTGTCGCCTCGCCTTGTCANTGCGTGGCATCGTGTACGTTGTTGCNGCTGCTGTTGTTGTTGTGGTGTTTTTGTTGC] [+] EMBL AU031467 [ACCATTGCCCATAATTGGCTTCCCAGACACAAACTTCTTTGGTATAAAGATCGATCATCCACAGGAAGGAGAGAGCAAGCTTACAGCTCACAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTTTGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACCAGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTGGCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTCTTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGGCTCCACCTCGCCGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCGCGGCCTACCACGAGCAGTTCGGCGGGGAGGCTGGAGGACGCCGTCGCCGGGAAGGGGCACGGCTACTACAGAGANGCGCTCCTCTCGCTCGTCGCCGGCGGAAGTGACCCGGCCGATCAGCCATTGCNCCTCCGATCTGTCGCCTCGCCTTGTCANTGCGTGGCATCGTGTACGTTGTTGCNGCTGCTGTTGTTGTTGTGGTGTTTTTGTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15164#0 TTTTTTTTTTTTTTTTCAAGAAAGAACAGCAAACATTTTACTATCTCTGATTGAATCATG 60 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 TCCATCACAACTACCTTACAGTCCAAACCTGAAAATGCAGGTGTATATGCAACAAGTTTT 120 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 CTCATCTTCTCTCTAGGAATTCAGCATGATGGGACTGCATCCAGGTAAGGAGGCCATCAA 180 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 ACCTGCCCCTATTCAAATTATTGCAGACATAATCTTAATTCTCAAATTACCCCGGGTTCC 240 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 ACGACTCCAATTCACCAATCAACCAATCACTTCAATTGAACACACCCCACCCCAACCCCC 300 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GGGGTTAACTCAGCATCAGGGGCTGGCAACTCGTTAATTTTCTTTTATCCCCCTTTCCAT 360 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 TTCAACAGGGAACTAAATTAAATTGATCCATACGTACATGTCTGCACATGTGTAGACAAC 420 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 TGATGAACATTTCCGGGTTATTGAAATACCACCATTGCCCATAATTGGCTTCCCAAACAC 480 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------ACCATTGCCCATAATTGGCTTCCCAGACAC 30 consensus_15164#0 AAACTTCTTTGGTATAAAGATCGATCATCCACAGGAAGGAGAGAGCAAGCTTACAGCTCA 540 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 AAACTTCTTTGGTATAAAGATCGATCATCCACAGGAAGGAGAGAGCAAGCTTACAGCTCA 90 consensus_15164#0 CAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTT 600 consensus_15164#1 -----------TAAGCCCCTAACCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTT 49 consensus_15164#2 CAGCAATCAGCTAAGCCAGTAGCCAATCCTCACTCACTACTCATCTTCTCTTCCCATCTT 150 ****** ** ************************************** consensus_15164#0 TGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACC 660 consensus_15164#1 TGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACC 109 consensus_15164#2 TGTTGCTTGCATTCAGAGATCATCCAATCGGCCATGGCTGATGAAATCCAGCATCTGACC 210 ************************************************************ consensus_15164#0 AGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTG 720 consensus_15164#1 AGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTG 169 consensus_15164#2 AGGGCCTTCTCAGGGCTCGGTGGCCTCGGCGTGGACGAGCCGGCGATGGTGTCGGCGCTG 270 ************************************************************ consensus_15164#0 GCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTC 780 consensus_15164#1 GCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTC 229 consensus_15164#2 GCCAAGTGGCGCAGGCAGCCGGAGAAGCTGTCCGGGTTCAGGAAGAGCTTCAATGGCTTC 330 ************************************************************ consensus_15164#0 TTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATG-CTCCACCTCGC 839 consensus_15164#1 TTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATG-CTCCACCTCGC 288 consensus_15164#2 TTCAAGGATCATGGCGGCGTCATCGAGAAGTGCGAGGAGGAGTACATGGCTCCACCTCGC 390 ************************************************ *********** consensus_15164#0 CGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCG 899 consensus_15164#1 CGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCG 348 consensus_15164#2 CGCCGAGTTCTCGCGGTTCAAGAACCTGATGGTGATGTGGGCGATGCACCCGTGGGAGCG 450 ************************************************************ consensus_15164#0 CGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGA 959 consensus_15164#1 CGACGCGCGGCTGGCGCACCACGTGCTCCACCAGGCGCACCCGGCGGCCATCGTCGTGGA 408 consensus_15164#2 CGGCCTACCACGAGCAGTTCG-GCGGGGAGGCTGGAGGAC---GCCGTCGCCGGGAAGGG 506 ** * * * ** * * * * ** * ** ** * * ** ** consensus_15164#0 GATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCA-AGGCGTACCAGGCGC 1018 consensus_15164#1 GATCGCTTGCACCCGGACGGCGGAGGAGCTCCTCGGCGCTCGCA-AGGCGTACCAGGCGC 467 consensus_15164#2 GCACGGCTACTACAGAGANGCGCTCCTCTCGCTCGTCGCCGGCGGAAGTGACCCGGCCGA 566 * ** * * * * *** **** *** ** * * * ** * ** consensus_15164#0 TGTTCCACCACTCCCTCGAGGAGG-ACGTCGCCT-ACCGCGCCAGGG----ACAAGCCCT 1072 consensus_15164#1 TGTTCCACCACTCCCTCGAGGAGG-ACGTCGCCT-ACCGCGCCAGGG----ACAAGCCCT 521 consensus_15164#2 TCAGCCATTGCNCCTCCGATCTGTCGCCTCGCCTTGTCANTGCGTGGCATCGTGTACGTT 626 * *** * ** *** * * ****** * * ** * * consensus_15164#0 ACTGCGGC---------------------------------------------------- 1080 consensus_15164#1 ACTGCGGCGTAAGCAATTCAACAAACACCTTGAGTGCACGTCGTCGTCGTCGCGTCGACC 581 consensus_15164#2 GTTGCNGCTGCTGTTGTTGTTGTGGTGTTTTTGTTGC----------------------- 663 *** ** consensus_15164#0 ----------------------------------------------CTGCTGGTCGGGCT 1094 consensus_15164#1 TCTCCCGTTGATCTTTTTCTGTGTCCCGTGTCGCGCGTGGATGCAGCTGCTGGTCGGGCT 641 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGC 1154 consensus_15164#1 GGTGAGCGCGTACCGGTACGAGGGCCCGAGGGTGAGCGAGGAGACGGCGCGCGCGGAGGC 701 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAA 1214 consensus_15164#1 GAAGGCGCTCGTCGCCGCGGTGAAGAGCGCCGGCCACGCGGCGGCGAAGCTGGTGGAGAA 761 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 CGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAA 1274 consensus_15164#1 CGACGACGTCGTCAGGATCCTCACCACCCGGAGCAAGCCGCACCTCGTCGAGACCTTCAA 821 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACT 1334 consensus_15164#1 GCACTACAAGGAAATCCATGGCCGCCACATCGAAGAGGATCTTGGGCACGAGGAGACACT 881 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGAGGTGGTGGCGGC 1394 consensus_15164#1 GAGGGAGGCGGCGCTGTGCCTGGCGACGCCGGCGAGGTACTTCAGCGA------------ 929 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GGCGGTGAGCGACGGCGCCGACCACCACGCGAAGGAGGCGCTGACGCGGGTGGCGGTGAC 1454 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GCGGGCGGACGTGGACATGGACGCCATCCGCGCGGCCTACCACGAGCAGTTCGGCGGGAG 1514 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GCTGGAGGACGCCGTCGCCGGGAAGGCGCACGGCTACTACAGAGACGCGCTCCTCTCGCT 1574 consensus_15164#1 ------------------------------------------------------------ consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 CGTCGCCGGCGGCAAGTGACCCGGCCGATCAGCCATTGCTCCTCCGATCTGTCGCCTCGC 1634 consensus_15164#1 -----------------------------------TTGCTCCTCCGATCTGTCGCCTCGC 954 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 CTTGTCAGTGCGTCGCCATCGTGTACGTTGTTGCTGCTGCTGTTGTTGTTGTTGTGTTTT 1694 consensus_15164#1 CTTGTCAGTGCGTCGCCATCGTGTACGTTGTTGCTGCTGCTGTTGTTGTTGTTGTGTTTT 1014 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 TGTTGCATGCGTGGATCGAGACTTGTAAACTTAGCATTTCGCAGCAGAGCTGTTGGTATG 1754 consensus_15164#1 TGTTGCATGCGTGGATCGAGACTTGTAAACTTAGCATTTCGCAGCAGAGCTGTTGGTATG 1074 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 GAATAAGGTCGATTTAATTTTTCTTGAAAAAAAAAAGAGGATCGATTTCATTTGGGAAAA 1814 consensus_15164#1 GAATAAGGTCGATTTA-------------------------------------------- 1090 consensus_15164#2 ------------------------------------------------------------ consensus_15164#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1844 consensus_15164#1 ------------------------------ consensus_15164#2 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||