Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15173 cluster # 15173       Sequences # 20       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15173#0 length = 652 sequences # 19  
consensus_15173#1 length = 642 sequences # 1  

consensusID : consensus_15173#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 652
fasta sequence
                              [TTTTTTTTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG-TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT-CTAAGGGATAACTATCACC-ATGCTCAGG-TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA-GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACTAAAGAAACGGGGGGCACGGGACCCAATTCGCCCTATAGGGAGCC]

[+] EMBL CA757323             [TTTTTTTTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAATATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGGGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTTGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGCCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATGGAGTATAGAAAGACGGATAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTGCAGTCCTCCACACAAAGATGCATGCAGGCTAGAACTAAAGAAACGGGGGGCACGGGACCCAATTCGCCCTATAGGGAGCC]
[-] EMBL AU031861             [    TTTTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAAGGGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCC                                                                                                                                                                                                               ]
[-] EMBL AU094969             [      TTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAA TAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCCAAGAAGGCTTTCCACCACCACTTCCAGTNCTCCACACNAAGATGCATGTAGGTTAGGACTt                                           ]
[-] EMBL AU094314             [      TTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGAC                                             ]
[-] EMBL AU101272             [      TTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTTCACACAAAGATGCATGTAGGTTAGGAC                                             ]
[-] EMBL AU077678             [      TTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAA TAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGAC                                             ]
[-] EMBL AU164329             [      TTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTNTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAA TAGAA GGNCAGCAAGAAGCCAATAGCACCAGTAGACAGCATGANGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGAC                                             ]
[-] EMBL AU183031             [      TTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGAT                                                                                                                                                                                                                           ]
[-] EMBL AU182966             [      TTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATG                                                                                                                                                                                                                             ]
[-] EMBL AK060842             [              ATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATCGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACTAAAGAAACctcaccac                            ]
[+] EMBL CB638314             [                    TAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAAGTAGAGCGTTGCTGAGACCGGTCCACTTAAGCTCCTAAGGTCGAACACGAAGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAAGCTTTCCACCACCACTTCCAGTCCTCCACACA                                                                  ]
[+] EMBL CB638097             [                                     ATATCTGTCAAAGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGA                                                                                                                      ]
[-] EMBL AU064911             [                                                                                                                                                         ATAAGCTTGACCTTAAAG AACTGTGCTATGCTAATTGATAGNATTAATC GGGCCAAAAGCCATGGGCGTTTGCCATGTTTACATTTTTCTTTTCAATTCAATATTANTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGT TGNTCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGNTGAGAANAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGANCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACT                                            ]
[-] EMBL AU065120             [                                                                                                                                                                                                                         TGGGCG TTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCANACAAAGATGCATGTAGGTTAGGACT                                            ]
[-] EMBL AU101271             [                                                                                                                                                                                                                                  GCCATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTT CTAAGGGATAACTATCACC ATGCTCAGG TGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACT                                            ]
[-] EMBL AU064980             [                                                                                                                                                                                                                                                              tactnatTTGTGTGATATGTTTCCTAAGGGATAACTATCACCAATGCTCAGGTTGATCCTATTGCAGCAAGANTGTNGTTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTANTGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCCTGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACT                                            ]
[-] EMBL AU064610             [                                                                                                                                                                                                                                                                                                                                    GAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGANCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGNCGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACT                                            ]
[-] EMBL AU064813             [                                                                                                                                                                                                                                                                                                                                                CTCTAGTCAATCTTAACAGATGAGAAGAGNTAATGGACGAAGTAGAA GGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACT                                            ]
[-] EMBL AU064177             [                                                                                                                                                                                                                                                                                                                                                                                                        anAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTANAAGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGGTTAGGACT                                            ]


>consensus_15173#0 TTTTTTTTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACA AAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAAC ATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGC TATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCGTTGCCATGTTTACATTT TTCTTTTCAATTCAATATTATTGTGTGATATGTTTCTAAGGGATAACTATCACCATGCTC AGGTGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGA GGTAATGGACGAAGTAGAAGGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGG CAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCCACTTAGGC TCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGCGACAGAAC CAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAAGATGCATGTAGG TTAGGACTAAAGAAACGGGGGGCACGGGACCCAATTCGCCCTATAGGGAGCC



consensusID : consensus_15173#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence
                              [TTTTTGGAAGAAACATAAGGACTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCGTTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATGTGTGATATGTTTCTAAGGGATAACTATCACCATGCTCAGGTGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAAGGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGGACAGAACCAGAAGCAAAGAAGGGTTCCACCAACATTCAGCTCCACACAAGATGCTGTGGTACGGACTAAAGAAACTCAACAAGAATAGACCAGNGGAAGGCA]

[-] EMBL BI806365             [TTTTTGGAAGAAACATAAGGACTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAAAGTGTTCCAACAAAGGCTGTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAAAGTCAAAAAACATAGCTGAAACATGCAGACATGCCTACAAAACATAAGCATGAACTTAAAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCGTTGCCATGTTTACATTTTTCTTTTCAATTCAATATTATGTGTGATATGTTTCTAAGGGATAACTATCACCATGCTCAGGTGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAGATGAGAAGAGGTAATGGACGAAGTAGAAGGACAGCAAGAAGCCAATAGCACCAGTAGACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGGACAGAACCAGAAGCAAAGAAGGGTTCCACCAACATTCAGCTCCACACAAGATGCTGTGGTACGGACTAAAGAAACTCAACAAGAATAGACCAGNGGAAGGCA]


>consensus_15173#1 TTTTTGGAAGAAACATAAGGACTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAA AGTGTTCCAACAAAGGCTGTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACAA AGTCAAAAAACATAGCTGAAACATGCAGACATGCCTACAAAACATAAGCATGAACTTAAA GAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCGTTGCCAT GTTTACATTTTTCTTTTCAATTCAATATTATGTGTGATATGTTTCTAAGGGATAACTATC ACCATGCTCAGGTGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAACAG ATGAGAAGAGGTAATGGACGAAGTAGAAGGACAGCAAGAAGCCAATAGCACCAGTAGACA GCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCGGTC ACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGAAGGG ACAGAACCAGAAGCAAAGAAGGGTTCCACCAACATTCAGCTCCACACAAGATGCTGTGGT ACGGACTAAAGAAACTCAACAAGAATAGACCAGNGGAAGGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15173#0      ------------TTTTTTTTTTTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAA 48
consensus_15173#1      TTTTTGGAAGAAACATAAGGACTGTAATCGAATAGCTCTTTAATATTGAATATCTGTCAA 60
                                      *      **************************************

consensus_15173#0      AGTGTTCCAACAAAGGCTGCTCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACA 108
consensus_15173#1      AGTGTTCCAACAAAGGCTG-TCACAAATGCCCAGAGAAAACAAAACATAATAGTATTACA 119
                       ******************* ****************************************

consensus_15173#0      AAGTCAAAAAACATAGCTGAAACATTGCAGACATGCCTACAAAACATAAGCATGAACTTA 168
consensus_15173#1      AAGTCAAAAAACATAGCTGAAACAT-GCAGACATGCCTACAAAACATAAGCATGAACTTA 178
                       ************************* **********************************

consensus_15173#0      AAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCGTTGCC 228
consensus_15173#1      AAGAAACTGTGCTATGCTAAATGATAGAATTAATCAGGGCCAAAAGCCATGGGCGTTGCC 238
                       ************************************************************

consensus_15173#0      ATGTTTACATTTTTCTTTTCAATTCAATATTATTGTGTGATATGTTTCTAAGGGATAACT 288
consensus_15173#1      ATGTTTACATTTTTCTTTTCAATTCAATATTAT-GTGTGATATGTTTCTAAGGGATAACT 297
                       ********************************* **************************

consensus_15173#0      ATCACCATGCTCAGGTGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAA 348
consensus_15173#1      ATCACCATGCTCAGGTGATCCTATTGCAGCAAGAGTGTGGGTGCCTCTAGTCAATCTTAA 357
                       ************************************************************

consensus_15173#0      CAGATGAGAAGAGGTAATGGACGAAGTAGAAGGACAGCAAGAAGCCAATAGCACCAGTAG 408
consensus_15173#1      CAGATGAGAAGAGGTAATGGACGAAGTAGAAGGACAGCAAGAAGCCAATAGCACCAGTAG 417
                       ************************************************************

consensus_15173#0      ACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCG 468
consensus_15173#1      ACAGCATGATGGCAAGGGCCATGATCAGGGAATAGCCAAGGTAGAGCGTTGCTGAGACCG 477
                       ************************************************************

consensus_15173#0      GTCCACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGA 528
consensus_15173#1      GTC-ACTTAGGCTCCTAAGGTCGAACACGAGGTAGTTGATTGAGTATAGGAAGACGTAGA 536
                       *** ********************************************************

consensus_15173#0      AGGCGACAGAACCAGAAGCAAAGAAGGCTTTCCACCACCACTTCCAGTCCTCCACACAAA 588
consensus_15173#1      AGG-GACAGAACCAGAAGCAAAGAAGGGTT-CCACCAACATT--CAG--CTCCACACAA- 589
                       *** *********************** ** ****** ** *  ***  ********** 

consensus_15173#0      GATGCATGTAGGTTAGGACTAAAGAAACGGGGGGCACGGGACCCAATTCGCCCTATAGGG 648
consensus_15173#1      GATGC-TGT-GGTACGGACTAAAGAAACTCAACAAGAATAGACCAGNGGAAGGCA----- 642
                       ***** *** ***  *************              ***         *     

consensus_15173#0      AGCC 652
consensus_15173#1      ----
                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)