These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 948 fasta sequence [GACACTGACATGGACTGAAGGAGTAGAAA-----TAG-AAATCAAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGTACTGTTCCATTTGTGTTTGTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTTTGGCCATCTGTGCATG-TCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGAGCAGACAATAAAAACACACTGTTCCAGGAGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAACAC] [+] EMBL CF307618 [GACACTGACATGGACTG AGGAGTAGAAA AAATCATAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGC ] [+] EMBL CF308901 [ ATGGACTGAAGG G AG TAG AAA AAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAATGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAG ] [+] EMBL CF309434 [ CTGAAGGAGTAGAAATTCCCTAGTAAATCAAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCGCTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTC ] [+] EMBL CF316871 [ AATCAAAGAACACAAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCT ] [+] EMBL CF299589 [ AAAGCATCCAAAACAACACCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACCTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTTGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTC ] [+] EMBL CF303107 [ acgaggCAGGAAACTTCTTTTCAATCGATCACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCAAGGCCTCGCCGGCGCCGG ] [+] EMBL AK071051 [ ACTCCACTGGTGAGTAGTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTTCAGAAGATCATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCCTACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAAGCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGAGATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTTCATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGTCAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGTACTGTTCCATTTGTGTTTGTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTTTGGCCATCTGTGCATG TCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGAGCAGACAATAAAAAC ] [-] EMBL CF309435 [ CTCAGGAAGCATGGCTTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGTCGGCAAGAAGGACAAGTCGTCCCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGTACTGTTCCATTTGTGTTTGTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTTTGGCCATCTGTGCAAGATAAATAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGAGCAGCCAATAAAAACACACTGTTCCAGGAGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAACAC] [-] EMBL CF308900 [ CAAGTTGTCGCCGTTGTTGTCCCCCAAGGACAAGGAGAAGACCAAGAGCAAGTTCCTTTCCTTTGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTGCTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTGTGGACTGTTCCATTTGGGTTTGTCCCTCTTCCTCTCCTTCAGAAAAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTTTTTTTGGCCATCTGTGCATG TCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAGTTGCTCCATGTTGAGTTGTTAGAGTGGTTTTTTGTAAATGTAATTCAGGATTTCAGATGAGCAGACAATAAAAACCCCCTGTTTCAGGA AAAAAAAAAAAAAAAAAAAAAAA ] consensusID : consensus_15184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence [GAATTAATCTGCACTTTCAGTTTCATTTTTGTGATTTGCTTTACACCGTTAGTTCGTTCTTCATCTTTAGGCTTGAGCTGTTGAGCAAGTGAGATGTCTGACTGGTTTATATGATCTCTCCCTGTTTGCAGGCCAAGCATCACGCTTCTCTATCCGCTGTAAGTACAGCCACGATTTTATCTACGGATATCTCATCGTTAGTAATTATAGTTTGGTTCATGTGCACTGTTCTTGTGCGTACTGGTAATCGACTGAGTGCAGGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCG-CCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAATTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCAAAAAAAAGAAAAAAAA] [+] EMBL AK100937 [GAATTAATCTGCACTTTCAGTTTCATTTTTGTGATTTGCTTTACACCGTTAGTTCGTTCTTCATCTTTAGGCTTGAGCTGTTGAGCAAGTGAGATGTCTGACTGGTTTATATGATCTCTCCCTGTTTGCAGGCCAAGCATCACGCTTCTCTATCCGCTGTAAGTACAGCCACGATTTTATCTACGGATATCTCATCGTTAGTAATTATAGTTTGGTTCATGTGCACTGTTCTTGTGCGTACTGGTAATCGACTGAGTGCAGGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCG CCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAATTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAG ] [-] EMBL CF315909 [ CTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGGGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCAAAAAAAAGAAAAAAAA] consensusID : consensus_15184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 841 fasta sequence [GAGTAGAAAGTAGCTCTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGCTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC-TTCATCTACAAGAAGCTC-GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACTGCGTTACAGTGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATAATATTTAAAAAAAAAAAAAAAAA] [+] EMBL CF315910 [GAGTAGAAAGTAGCTCTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGCTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC TTCATCTACAAGAAGCTC GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGGGCGAACCGGAAGCT ] [+] EMBL CF305811 [ TTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCTGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCNCATCNCCTTTGCTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCTTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC TTCATCTACAAGAAGCTC GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCG ] [-] EMBL CA759580 [ TCTCTATCCGCTGTACGCGTCCATNTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCC TTCATTTACAAGAAGCTC GTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGGGGGGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACTGCGTTACAGTGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATAATATTTAAAAAAAAAAAAAAAAA] [+] EMBL BI796540 [ TACTGGATTCCGGT T GTATCC GTGAAGGT CTGTTCGTGGCGT GCT GTGCTCCC CAGTTCAAGGGCGCCTCCGTTCATCTACAAGAAGCTCTGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGTCGGCACC CCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAGTGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATAATATTTTAAAAA ] consensusID : consensus_15184#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 683 fasta sequence [TCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGGTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAG-CTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACC-GTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCATTGATAAAAAAAAAAAA] [-] EMBL CA759581 [TCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGGTGGGCCAAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAAGGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAG CTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACC GTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAGTGCTGAGTGTTCCCTGCATTGATAAAAAAAAAAAA] [+] EMBL BI795009 [ TGTACGCGTCCATCTGC CGATGGAGAGCCCGACCAAGGTTGACGACGA CA TTGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGAGAT GTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGTCTCAGGAAGTACCGCGCCA GGGCGGC CC CCGCCACC GTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAaaaaaaa ] [+] EMBL AU069752 [ CGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAG CTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCC CAGCCGGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAaaaa ] consensusID : consensus_15184#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [GGATCCAGAGAGTAGCACTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAG] [+] EMBL AK064041 [GGATCCAGAGAGTAGCACTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAAACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGAGAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCTCCTGGAGATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTTCGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGTCAGGGAGCAGCTCAGGAAGTACCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGCCGGCGAAGATCACAAGGTGCACATTGCCAAGGCTGAGCACGATCATGGGCACTGATGGGGACATCAGGGGAGATGATCTGAGCGAACCGGAAGCTTGGCTGCTCTAGATTAATTGCTGATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAG] consensusID : consensus_15184#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 261 fasta sequence [GACACTGATATGGACTGAAGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCACTGCATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGCCTTGCCGTTCCTTACCAAAGGGAAAATTCACGGCCG] [+] EMBL CF315963 [GACACTGATATGGACTGAAGGAGTACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTCTGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAGTGCTGAGTGTTCACTGCATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGCCTTGCCGTTCCTTACCAAAGGGAAAATTCACGGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15184#2 ------------------------------------------------------------ consensus_15184#4 ------------------------------------------------------------ consensus_15184#3 ------------------------------------------------------------ consensus_15184#1 GAATTAATCTGCACTTTCAGTTTCATTTTTGTGATTTGCTTTACACCGTTAGTTCGTTCT 60 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 -----------GACACTGACATGGACTGAAGGAGTAGAAATAGAAATCAAAGAACACAAA 49 consensus_15184#2 ---GAGTAGAAAGTAGCTCTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAA 57 consensus_15184#4 -GGATCCAGAGAGTAGCACTTTGCTTCTCCCTGAGGTCTCGTCTTCTTTTCAGCTCAGAA 59 consensus_15184#3 ------------------------------------------------------------ consensus_15184#1 TCATCTTTAGGCTTGAGCTGTTGAGCAAGTGAGATGTCTGACTGGTTTATATGATCTCTC 120 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 GCATCCAAAACAACACCAGGAAACTTCTTTTCAA----TCGATCACTCCACTGGTGAGTA 105 consensus_15184#2 ACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGA 117 consensus_15184#4 ACAAGCCACAGGCTTCAGAGAAGACATCCAATTGGTGCTGATTCCATCGATCGATCGGGA 119 consensus_15184#3 ------------------------------------------------------TCGGGA 6 consensus_15184#1 CCTGTTTGCAGGCCAAGCATCACGCTTCTCTATCCGCTGTAAGTACAGCCACGATTTTAT 180 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 GTGAGTGGCTAGTGACTGGTCAGTTCATCACTTGTGAAGGTTTTGCAATCAGGAAAAGTT 165 consensus_15184#2 GAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGCTGGGCC 177 consensus_15184#4 GAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCC---------------------- 157 consensus_15184#3 GAGGAGAGAGATGGGCAAGACATGGGCGATCATCACCCACCTCAACTCCATTGGTGGGCC 66 consensus_15184#1 CTACGGATATCTCATCGTTAGTAATTATAGTTTGGTTCATGTGCACTGTTCTTGTGCGTA 240 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 CAGAAGAT-CATGGGCAAGCTCTGGACAATCCTCACTCACGTTCATTCCCTTGCAGGGCC 224 consensus_15184#2 AAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAA 237 consensus_15184#4 ------------------------------------------------------------ consensus_15184#3 AAGCATCACGCTTCTCTATCCGCTGTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAA 126 consensus_15184#1 CTGGTAATCGACTGAGTGCAG---GTACGCGTCCATCTGCGCGATGGAGAGCCCGACCAA 297 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 TACCGTCATGCTCCTGTACCCCTTGTATGCGTCGGTGCAGGCCATGGAGAGCCCATCGAA 284 consensus_15184#2 GGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGA 297 consensus_15184#4 -----------------------------------------------------TCCTGGA 164 consensus_15184#3 GGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGA 186 consensus_15184#1 GGTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCCTGGA 357 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 GCTTGACGACGAGCAGTGGCTGGCCTACTGGATCCTCTACTCCTTCATCACCCTCGTGGA 344 consensus_15184#2 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 357 consensus_15184#4 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 224 consensus_15184#3 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 246 consensus_15184#1 GATGGTCGCCGAGCCTGTCCTCTACTGGATTCCGGTGTGGTATCCGGTGAAGGTGCTGTT 417 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 GATGCTTCTCGAGTCCCTCATCTACTGGATACCGATCTGGTACGAGCTGAAGCTGCTGTT 404 consensus_15184#2 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 417 consensus_15184#4 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 284 consensus_15184#3 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 306 consensus_15184#1 CGTGGCGTGGCTGGTGCTCCCGCAGTTCAAGGGCGCCTCCTTCATCTACAAGAAGCTCGT 477 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 CATCGCGTGGCTGGCGCTGCCCAACTTCAGGGGAGCCGCGTTCATCTACAACAGGTTCGT 464 consensus_15184#2 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 474 consensus_15184#4 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 341 consensus_15184#3 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 363 consensus_15184#1 CAGGGAGCAGCTCAGGAAGTA---CCGCGCCAGGGGCGGCGCCGCCGCCACCGTCACCGC 534 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 CAGGGAGCAGCTCAGGAAGCATGGCCTCGCCGGCGCCGGCGCCGGCGCCGCCGCCAGCGT 524 consensus_15184#2 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 529 consensus_15184#4 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 396 consensus_15184#3 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 418 consensus_15184#1 CGGCGAAGATCACAAGGTGCA-----CATTGCCAAGGCTGAGCACGATCATGGGCACTGA 589 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 CGGCAAGAAGGACAAGTCGTCGCCGTCGTCGTCACCCAAGGACAAGGAGAAGACCAAGAG 584 consensus_15184#2 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 586 consensus_15184#4 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 453 consensus_15184#3 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 475 consensus_15184#1 TGGGGACATCAGGGGAGATGATCT---GAGCGAACCGGAAGCTTGGCTGCTCTAGATTAA 646 consensus_15184#5 ------------------------------------------------------------ consensus_15184#0 CAAGTTCCTCTCCTTCGTCACTCCCAAGAAGGATCATGAAGCTTACTGAGCCAAGAAGTG 644 consensus_15184#2 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 640 consensus_15184#4 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 507 consensus_15184#3 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 529 consensus_15184#1 TTGCT------GATGTATGATAGAAACGCCATGGTATTCTGTCGAGAAACATTTGGGAGT 700 consensus_15184#5 ----------------------------------GACACTGATATGGACTGA--AGGAGT 24 consensus_15184#0 CTGATCAGTCGGATCCCTGAAGATAGTTTTTTAGTGTG-TGTACTGTTCCATTTGTGTTT 703 ** * * * consensus_15184#2 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 700 consensus_15184#4 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 567 consensus_15184#3 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 589 consensus_15184#1 ACCCCATATGTACTATATCTGAAATCTGAATTGTGAAAGATTAGCTACTACTGTAGTTTC 760 consensus_15184#5 ACCCCATATGTACTATATCTGAAATCTGAACTGTGAAAGATTAGCTACTACTGTAGTTTC 84 consensus_15184#0 GTCCCTCTTCCTCTCCTTCAGAAGAGGCAGCTAGCTAGCTTCATGTTTGGCTGGTCTTTT 763 *** * ** ** *** * * * * * * *** *** consensus_15184#2 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACTGCGTTACAG- 759 consensus_15184#4 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAG- 626 consensus_15184#3 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCATTTAACAGCGTTACAG- 648 consensus_15184#1 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAG- 819 consensus_15184#5 TGCTGTAGGGGGAATGTGTACTGGTCTGTTTTGAGTTGAGGCACTTAACAGCGTTACAG- 143 consensus_15184#0 TGGCCATCTGTGCATGTCTGTAAACTTTATTGGAGTGAGGGGAAAAAAGAGCATAATTAG 823 ** * * **** * * ** **** ** * ** ** * * consensus_15184#2 -TGCTGAGTGTTCACTGCATTGATAATCCTGATCAACCGATAATCGATTTCGAAGAAATA 818 consensus_15184#4 -TGCTGAG---------------------------------------------------- 633 consensus_15184#3 -TGCTGAGTGTTCCCTGCATTGATAAAAAAAAAAAA------------------------ 683 consensus_15184#1 -TGCTGAGTGTTCCCTGCA-----AAAAAAAGAAAAAAAA-------------------- 853 consensus_15184#5 -TGCTGAGTGTTCACTGCATTGATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 202 consensus_15184#0 TTGCTCCATGTTGAGTTGTTAGAGTGGTTTCTTGTAAATGTAATTCAGGATCTCAGATGA 883 **** consensus_15184#2 ATATTTAAAAAAAAAAAAAAAAA------------------------------------- 841 consensus_15184#4 ------------------------------------------------------------ consensus_15184#3 ------------------------------------------------------------ consensus_15184#1 ------------------------------------------------------------ consensus_15184#5 AAAAAAAAAAAAAAAACCACTGCCTTGCCGTTCCTTACCAAAGGGAAAATTCACGGCCG- 261 consensus_15184#0 GCAGACAATAAAAACACACTGTTCCAGGAGTGCCCAAAAAAAAAAAAAAAAAAAAAAAAA 943 consensus_15184#2 ----- consensus_15184#4 ----- consensus_15184#3 ----- consensus_15184#1 ----- consensus_15184#5 ----- consensus_15184#0 AACAC 948 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||