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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1026 fasta sequence
[TCAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA-TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC-TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC-AAGCCCCA-TTTCGAGCAAC-TGTTCAAGGAGACCGGGAGCTACAACAAGAGC-TTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACC-TAGC-AAAGCCGCACG-CATGTTTT-CA-GGGACACAGGAGAAGTGT-GCCACTTGCAGTAAAA--CAGCGTATCC-TCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGT-CCTGCTTCAAATGTTCTCA-CGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCA-TCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC-TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAAAAGAAA]
[+] EMBL OSS4178A [TCAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGNCGNCGNAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGNGACGAAGNAGAAGTGCAAGGTGTNCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCANCGACGNCGTCG ]
[+] EMBL OSS3306A [TCAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGATTGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGATCCTGCTTTCAAGTGNCAACACTGCAAGTCCACCCTNTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGNCATACTGCAAAGNCCCATTTTCGAGCAACTTGTTCAA ]
[+] EMBL AU065317 [ CAAAATCCCATTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAGCTTTCCAATNACCCGNGAAACCCGCATCGGAGAAGTTGACNCCTGAGCTGANAAGATCACCTTAGC AA ]
[+] EMBL AK058507 [ TTGCTCACCCGCGTTATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAGC TTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACC TAGC AAAGCCGCACG CATGTTTT CA GGGACACAGGAGAAGTGT GCCACTTGCAGTAAAA CAGCGTATCC TCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGT CCTGCTTCAAATGTTCTCA CGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCA TCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGT ]
[+] EMBL CF323532 [ ATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGTCGTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAGC TTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACC TAGC AAAGCCGCACG CATGTTTT CA GGGACACAGGAGAAGTGT GCCACTTGCAGTAAAA CAG ]
[+] EMBL AU030413 [ GCGCGGGAGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAGGAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGCAAGGTGTGCACCAAGACGGTGTACCCGA TGGACCAGCTCTCCACCGACGGCGT GTCTTCCACCGCTCCTGC TTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTANTCCTCGATTGAAGGAGTGCCATACTGC AAGCCCCA TTTCGAGCAAC TGTTCAAGGAGACCGGGAGCTACAACAAGAG TTCC ATCACCCGCG AANCCGCATCGGAGAAGTTG CT CTGAG TGACAAGATCACC TAGCna ]
[+] EMBL AU030414 [ CACN TAGCAAAACCCGCACGCCATGTTTTNCAGGGGACACAGGAGAAGTGTCCCCACTTGCAGTAAAAACCAGCGTATCCTTCTAGAGAAGTTGACAGTTGAAGGACAGGCCTNCCACAAGTCCCTGCTTCAAATGTTCTCACCGGTGGCTGTGCCATTTCGCCNTCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCATTCAGTCAAGCGCGCCGAAGCANAGCCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAaaa ]
[+] EMBL CA757302 [ ACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAA ]
[+] EMBL CA757153 [ ACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGC TTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAA ]
[+] EMBL CA757218 [ CCATATTTTCAGTGAGGCTTGAGGGCGAAAACTCGGAAGCCCTCTGTTTTACAACCTGCGTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTGTTGATTGCTCTTTGAGCGCGCGTTTAACAAGCAAGCAAGAAA]
consensusID : consensus_15214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1024 fasta sequence
[ATTGCGAACATTGACAACCTGTTTATTTTGTTGATAAAATGTGTTATGAATTCTGATGCTCTGGCCCTGCTTATTTGTTCAATTTTATGCAGCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGGTGAGTGCCATTGGCTGCATGCATTGCTTGTCTGTTTTCATTCCAAAGTACTTCTATGTTTGTATGTGATGCTACCTCGCTTTTCAACTAATTTTGTCTGAAACATTCATTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTTGTGCT-CTTTTCATCTTAGTTTCATACTGTAGTGTTGTTAGGTCATTTCTTCCAAAATTGCATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGATCTTTTAGGTACATTATTCCGCCTAATTGTATTGTTCTCCTGTAACAAGTTGTAAGGTTCTGCCTTGATTGTACTTATTTGCCAAGAATTTATTTCAATTATGCTCCTCAAGTTTTTGGAACATGCAGTGGTTGTGATGATAAGCTTTTATTTGCAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATTGTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCGGAAGCACAGCCGGCACCACCACCGGCCGGTGCAGATTCCTCCTGAATGTACCATATTTCCAGTGAGGATTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCAGGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCCCTTTGGAGGGCCATGAATATCATGTCCCTTTCGGGAGAAAAAATAA]
[-] EMBL CB640081 [ATTGCGAACATTGACAACCTGTTTATTTTGTTGATAAAATGTGTTATGAATTCTGATGCTCTGGCCCTGCTTATTTGTTCAATTTTATGCAGCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGGTGAGTGCCATTGGCTGCATGCATTGCTTGTCTGTTTTCATTCCAAAGTACTTCTATGTTTGTATGTGATGCTACCTCGCTTTTCAACTAATTTTGTCTGAAACATTCATTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTAGTG T TTTTTAATTTTA ]
[-] EMBL CB637788 [ CAAAGTACTTGTATGTTTATATGTGATGCTACCTCGCTTTTCAAGTAATTTTGTTTGGAACATTCATTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTTCTGCT CTTTTCATCTTAGTTTCATACTGTAGTGTTGTTAGGTCATTTCTTCCAAAATTGCATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGA ]
[-] EMBL CB661166 [ CCATAATTTGTGGTCCTTTTCATCCTAGTTTCATACTGTAGGGTGGTTAGGTCATTTCTTCCAAAATTGCATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGATCTTTTAGGTACATTATTCCGCCTAATTGTATTGTTCTCCTGTAACAAGTTGTAAGGTTCTGCCTTGATTGTACTTATTTGCCAAGAATTTATTTCAATTATGCTCCTCAAGTTTTTGGAACATGCAGTGGTTGTGATGATAAGCTTTTATTTGCAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATTGTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAGCTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCGGAAGCACAGCCGGCACCACCACCGGCCGGTGCAGATTCCTCCTGAATGTACCATATTTCCAGTGAGGATTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCAGGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCCCTTTGGAGGGCCATGAATATCATGTCCCTTTCGGGAGAAAAAATAA]
consensusID : consensus_15214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 735 fasta sequence
[GACGAGACAAGGGGGCTTAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTT--CAAGGAGACCGGGA-GCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACCTAGCAAAGCCGCACACATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACA-GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT-GTTCT-CACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC-AAGGAG--AAAGGGAGCTAC--AACC-ATC--TGA-TCAAATGCG-CATCAGTCAAGCGCGCCGAAGCACAG-CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAAAAGTTGTGCNAGTACTGATATACCGTACTCTATTTTGCTTAAAAAAAAAA]
[+] EMBL CA764742 [GACGAGACAAGGGGGCTTAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCCTCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTT CAAGGAGACCGGGA GCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACCTAGCAAAGCCGCACACATGTTTTCAGGGACACAGGAGAAGTGTGCCACTTGCAGTAAAACA GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAACATCATGT ]
[+] EMBL BI806615 [ CTGTTTCCAGGGAGACCGGGATGCTACCACCAGAGCTTCCAATCACCCGCG AACCCGCATCGGAGAAGTTGACTCCTGAGCTGACAAGATCACCTAGCAAA CCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGCCACCTTCAGTAAAACA GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGTGGCTGTGCCATTTCGCCATCC ATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCNAGTACTGATATACCGTACTCTATTTTGCTTAAAAAAAAAA]
[+] EMBL BE229561 [ GACACAGGAGAAGTGTGCCACTTGCAGTAAAACA GCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGTGGCTGTG CATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAGVCCGGCACCACCACCGGCCGCTGCAGATTCCYCCYGAATGTACCATATCTCCAGTGAGGSTTGAGGGCGAAAATTCGGGAGCCCTCTGTTTTACAACCYGCTTGTATGCCATGT ]
[+] EMBL AU097356 [ CCACTTGCAGTAAAACANGCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAAT GTTCT CACGGT GCTGTGCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAAAA ]
[+] EMBL AU095380 [ AAAACA GCGTATCCTCTAGAGAAGNTGACAGTTGAAGGACAGGCCTACCACAAGTCCTGCTTCAAATGGTTCTCCACGGTGGCTGTNCCATTTCGCCATCCAATTATGCAGCTTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTC AAGGAG AAAGGGAGCTAC AACC ATC TGA TCAAATGCG CATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAAAAaaaa ]
[+] EMBL AU097257 [ gTTCCNCCAAACTTTNCAAAGGAGGAAAAGGGAGCTACCAAACCAATCNTTGATTCAAATGCGCCATCAGTCAAGCGCGCCGAAGCACAG CCGGCACCACCACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAAATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACCGGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAA ]
consensusID : consensus_15214#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 125 fasta sequence
[ATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAANANA]
[+] EMBL AU094518 [ATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGAATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAANANA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15214#0 ------------------------------------------------------------
consensus_15214#2 ------------------------------------------------------------
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 ATTGCGAACATTGACAACCTGTTTATTTTGTTGATAAAATGTGTTATGAATTCTGATGCT 60
consensus_15214#0 -----------------------------------TCAAAATCCCATTGCTCACCCGCGT 25
consensus_15214#2 ------------------------------------------------------------
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 CTGGCCCTGCTTATTTGTTCAATTTTATGCAGCCGCGAAACCCGCATCGGAGAAGTTGAC 120
consensus_15214#0 TATATAACCGCGGCCGGCCATTGGGAGGGACGCCGCGAGGGGTGCTCGTTTCAGCGCGGG 85
consensus_15214#2 ------------------------------------------------------------
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 TCCTGAGCTGGTGAGTGCCATTGGCTGC-ATGCATTGCTTGTCTGTTTTCATTCCAAAGT 179
consensus_15214#0 AGGAGATCAGATCGGGCTCAGATCTTCCAGCTCGCCGCGCCGCCTCCGCCGCCGCAGCAG 145
consensus_15214#2 ------------------------------------------------------------
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 ACTTCTATGTTTGTATGTGATGCTACCTCGCTTTTCAACTAATTTTGTCTGAAACATTCA 239
consensus_15214#0 GAAGAGAGAGGGTGAGGAGAGGAGGAGGCTACGATGTTTAGCGGGACGCAGCAGAAGTGC 205
consensus_15214#2 ------------------------------------------------------------
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 TTTCAGACAAGATCACCTAGCAAAGCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGT 299
consensus_15214#0 AAGGTGTGCACCAAGACGGTGTACCCGATGGACCAGCTCTCCACCGACGGCGTCGTCTTC 265
consensus_15214#2 ---------------------------------------------------------GAC 3
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 GCCACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTAATGCCCCATAATTTGTGCTCT 359
consensus_15214#0 CACCGCTCCTGCTTCAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCC 325
consensus_15214#2 GAGACAAGGGGGCTTAAGTGCCAACACTGCAAGTCCACCCTCTCCCTTGGCAACTACTCC 63
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 TTTCATCTTAGTTTCATACTGTAGTGTTGTTAGGTCATTTCTTCC----AAAATTGC--- 412
consensus_15214#0 TCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTTCAAGGAGACCGGG 385
consensus_15214#2 TCGATTGAAGGAGTGCCATACTGCAAGCCCCATTTCGAGCAACTGTTCAAGGAGACCGGG 123
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 ---ATTGTTAGATGTTGAAATAGGGATGAATGATCAGAGGGATCTTTTAGGTACATTA-- 467
consensus_15214#0 AGCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAG 445
consensus_15214#2 AGCTACAACAAGAGCTTCCAATCACCCGCGAAACCCGCATCGGAGAAGTTGACTCCTGAG 183
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 --TTCCGCCTAATTGTATTGTTCTCCTGTAACA-----AGTTGTAAGGTTCTGCCTTGAT 520
consensus_15214#0 CTGACAAGATCACCTAGCAAA-GCCGCACGCATGTTTTCAGGGACACAGGAGAAGTGTGC 504
consensus_15214#2 CTGACAAGATCACCTAGCAAA-GCCGCACACATGTTTTCAGGGACACAGGAGAAGTGTGC 242
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 TGTACTTATTTGCCAAGAATTTATTTCAATTATGCTCCTCAAGTTTTTGGA-ACATGCAG 579
consensus_15214#0 CACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCA 564
consensus_15214#2 CACTTGCAGTAAAACAGCGTATCCTCTAGAGAAGGTGACAGTTGAAGGACAGGCCTACCA 302
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 TGGTTGTGATGATA-AGCTTTTATTT----GCAGGTGACAGTTGAAGGACAGGCCTACCA 634
consensus_15214#0 CAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGC 624
consensus_15214#2 CAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGC 362
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 CAAGTCCTGCTTCAAATGTTCTCACGGTGGCTGTGCCATTTCGCCATCCAATTATGCAGC 694
consensus_15214#0 TTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAG 684
consensus_15214#2 TTTGGAAGGTATCCTATACTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAG 422
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 TTTGGAAGGTATCCTATTGTGCAAGCACCATTTCTCCCAACTTTTCAAGGAGAAAGGGAG 754
consensus_15214#0 CTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACC 744
consensus_15214#2 CTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCCGAAGCACAGCCGGCACCACC 482
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 CTACAACCATCTGATCAAATGCGCATCAGTCAAGCGCGCGGAAGCACAGCCGGCACCACC 814
consensus_15214#0 ACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAA 804
consensus_15214#2 ACCGGCCGCTGCAGATTCCTCCTGAATGTACCATATCTCCAGTGAGGCTTGAGGGCGAAA 542
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 ACCGGCCGGTGCAGATTCCTCCTGAATGTACCATATTTCCAGTGAGGATTGAGGGCGAAA 874
consensus_15214#0 ATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACC 864
consensus_15214#2 ATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCATGTTCCAGTTCTGAGGATACC 602
consensus_15214#3 ------------------------------------------------------------
consensus_15214#1 ATTCGGAAGCCCTCTGTTTTACAACCTGCTTGTATGCCAGGTTCCAGTTCTGAGGATACC 934
consensus_15214#0 GGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGA 924
consensus_15214#2 GGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGA 662
consensus_15214#3 -------ATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCACATTGGTGAACCATGA 53
consensus_15214#1 GGGACCTATCAATTTCGTGTCCTCTGCTGTGCTAGACTCGATCCCTTTGGAGGGCCATGA 994
************************************ * **** * ******
consensus_15214#0 ATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGATATACCGTACTCTATTTTG 984
consensus_15214#2 ATATCATGTCCCTTTCAAAGAAAAAGTTGTGCNAGTACTGATATACCGTACTCTATTTTG 722
consensus_15214#3 ATATCATGTCCCTTTCAAAGAAATCGTTGTGCAAGTACTGAAAAAAAAAAAAAAA----- 108
consensus_15214#1 ATATCATGTCCCTTTCGGGAGAAAAAATAA------------------------------ 1024
**************** ** *
consensus_15214#0 TTGATTGCTTTTTGAGCGTGTGTTTAAAAAAAAAAAAAGAAA 1026
consensus_15214#2 CT----------------------TAAAAAAAAAA------- 735
consensus_15214#3 -------------------------AAAAAAAAAAAAANANA 125
consensus_15214#1 ------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||