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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15222#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 566 fasta sequence
[CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG-CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC-TTCGA-TGCGAAGCGG-TTGA-TTGG-T-A-GGAGGTTCTCCGACCCGTCCGTGC-AGAGTGACATGAAGCTATGGCCGTTC-AAGGTGGTGCCT-GGCCCCGGCGACAAGCCGAT-GATCGTCGTCCAGTACAAGGGCGANGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTANCTCGGCTCGTCCATCAAGAACGCCGTGGGT]
[+] EMBL OSS3070A [CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG NGTGGGCGTNTGGCA ]
[+] EMBL OSS3013A [CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTn ]
[+] EMBL OSS3167A [CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTGNNGTGGGCGTNTGGCA ]
[+] EMBL AU070018 [ GAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGANGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAA CGG TTGA TTGG T A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTC AAGGTGGTGCCT GGCCCCGGCGACAAGCCGAT GATCGTCGTCCAGTA ]
[+] EMBL OSS3619A [ AAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCNATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTNTGGCAGCACGACCGCNTGGAGATCATCGCCAACNACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACANCGTC TTCGA TGCGAAGGGGTTTGA TTGG T A GGAGGTTCTCCG ]
[+] EMBL OSS3305A [ AAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATNTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGNACCANGACGTCGTACGTCGNCTTCACCGACAACGAGCGcn ]
[+] EMBL C28596 [ AGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGTCTTCACCGACACCGAGCGGNTCATCGNCGACG CGTCAAG ]
[+] EMBL AU069458 [ AGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCAATTATNCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGNATCGACCTGGGGACGACCTACTCGTG NGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACNACCAGGGGAACCGGACCACGCCGTCNTACGTNGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCGNCAAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC T ]
[+] EMBL C28342 [ aaatATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCNTTTGCAATTATNCGCTTTCNATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGNATCGACCTGGGGACGACCTACTCGTG CGTGGGCNTNTGGCAACACGACCGNTTGGAGATCATCGCCAACNACCAGGGGAACCc ]
[+] EMBL C97625 [ tatatatTTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGNCGTCGTACGTCGGCTTCACCGACANCGAGCGGCTCATCGGCGACGCGNCAAAGAACCAGGTCGCCATGAACCCAACCAACANCGTC TTCGATTGCGAAGGGT TTGATTTNG TAA GGAGGTTNTCCGACCCGTCCGTGA AGAGTGACATGA ]
[+] EMBL C97797 [ CCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTNCAATTATNCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGAATCGACCTGGGGACGACCTACTCGTG NGTGGGCGTGTGGCAGCACGACCGCNTGGAGATCATCGCC ACGACCAGGGGAA ]
[+] EMBL AU161252 [ CCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCNATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG GGTGGGCGTNTGGCAGCACGACCGCNTGGAGATCATCGNCAACNACCAGGGGAACCGGACCACGCCGTCGTACGTNGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACAACGTC TTCGA TNCG AGGGT TTGA TTTG T A GGAGGTTCTCCGACCCGTCCGTTCAAGAGTNACATGAAGCTATGGCCGTTN AA GTGGTGCCT ]
[+] EMBL AU069368 [ CCACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTCTTTCGA TGCGAA CGG TTGA TTGG T A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTC ]
[+] EMBL AU069318 [ CACGCAGCAGCAAGCAATCCAATCCGAGAGCGCGCGTTTGCNATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTNTGGCAGCACGACCGCNTGGAGATCATCGCCAACNACCAGGGGAACCGGACCACGCCGTCGTACGTNGCCTTCACCGACACCGAGCGGCTCATCGGCGACG CGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAGGGGT TTGATTTGG T A GGAGGTTCTNCGACCCGTCCGTGC AGAGTTACAT ]
[+] EMBL AU161185 [ CAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAACGGG TTGA TTGGTT A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTCAAAGGTGGTGCCTGGGCCCCGGCGACAAGCCGATGGATCGTCGTCCAGTACAAGGGCGANGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTANCTCGGCTCGTCCATCAAGAACGCCGTGGGT]
[+] EMBL AU161382 [ CAATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAAGCGG TTGA TTGG T A GGAGGGTCTTCGACCCGTCCGTGC AGAGTGACATGAA CTATGGCCG TC AANGTGGTGCCT GG CCCGGCGACAAGCCGAT GATCGTCGTCCAGT CAAGGGCGANGAGAAGCAGNTCGCCGCGGANGAGATCTCGTCCATGGTGCTGATCAAGATGA GGAAATCGCGGAGGC ]
[+] EMBL AU162019 [ AATCCGAGAGCGCGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTC TTCGA TGCGAA CGG TTGA TTGG T A GGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATGAAGCTATGGCCGTTC AAGGTGGTGCCT GGCCCCGGCGACAAGCCGAT GATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAn ]
[+] EMBL AU163327 [ GCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACGCCGTCGTACGTCGCCTTNACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACCCAACCAACACCGTCTTTCGA TGCGAAGCGG TTGA TTGG T AGGGAGGTTCTCCGACCCGTCCGTGC ANAGTGAC ]
[+] EMBL AU069451 [ CGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGANANGGAGGAGAAGGAGGAGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGTG CGTNGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGACCACNCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACNCCGCCAAGAACCAGGTCGCCATNAACCCAACCAACACCGTC TTCGA TGCGAA CGG TTGA TTGG T A AGAGGTTCTCCGACCCGTCCGTGC AGAGTGACATNAAGCTAT ]
consensusID : consensus_15222#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[CAATCTCAAACGCAGATGCGAAGGGNTTGATTGGTAGGAGGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTGGCCCCGGCGACAAGCGANTGATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTACCTCGGCTCGTCCATCAAGAAC]
[+] EMBL C28731 [CAATCTCAAACGCAGATGCGAAGGGNTTGATTGGTAGGAGGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTGGCCCCGGCGACAAGCGANTGATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAGTTCGCCGCGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTACCTCGGCTCGTCCATCAAGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15222#0 CCGGAAATCAGAAAGAGAGAGAAATTCCCACGCAGCAGCAAGCAATCCAATCCGAGAGCG 60
consensus_15222#1 ------------------------------------------------------------
consensus_15222#0 CGCGTTTGCGATTATTCGCTTTCGATTCCGCGAGGTTTTTGGAGAGGGAGGAGAAGGAGG 120
consensus_15222#1 ------------------------------------------------------------
consensus_15222#0 AGGAGATGTCGAAGGGGGAAGGGCCGGCGATCGGGATCGACCTGGGGACGACCTACTCGT 180
consensus_15222#1 ------------------------------------------------------------
consensus_15222#0 GCGTGGGCGTGTGGCAGCACGACCGCGTGGAGATCATCGCCAACGACCAGGGGAACCGGA 240
consensus_15222#1 ------------------------------------------------------------
consensus_15222#0 CCACGCCGTCGTACGTCGCCTTCACCGACACCGAGCGGCTCATCGGCGACGCCGCCAAGA 300
consensus_15222#1 ------------------------------------------------------------
consensus_15222#0 ACCAGGTCGCCATGAACCCAACCAACACCGTCTTCGATGCGAAGCGGTTGATTGGTAGGA 360
consensus_15222#1 ---------------------CAATCTCAAACGCAGATGCGAAGGGNTTGATTGGTAGGA 39
* * * * * ********* * *************
consensus_15222#0 GGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTG 420
consensus_15222#1 GGTTCTCCGACCCGTCCGTGCAGAGTGACATGAAGCTATGGCCGTTCAAGGTGGTGCCTG 99
************************************************************
consensus_15222#0 GCCCCGGCGACAAGCCGATGATCGTCGTCCAGTACAAGGGCGANGAGAAGCAGTTCGCCG 480
consensus_15222#1 GCCCCGGCGACAAGCGANTGATCGTCGTCCAGTACAAGGGCGAGGAGAAGCAGTTCGCCG 159
*************** ************************* ****************
consensus_15222#0 CGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTANCTCG 540
consensus_15222#1 CGGAGGAGATCTCGTCCATGGTGCTGATCAAGATGAGGGAGATCGCGGAGGCCTACCTCG 219
******************************************************* ****
consensus_15222#0 GCTCGTCCATCAAGAACGCCGTGGGT 566
consensus_15222#1 GCTCGTCCATCAAGAAC--------- 236
*****************
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||