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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15225#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1614 fasta sequence
[CTCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT-CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC-AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC-AGAAG-AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC-GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC-GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCACACGGGGGCGAAGGTGATCCCGTTTTTAAGTTTAANAGGG]
[+] EMBL AK098925 [CTCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGACCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ]
[+] EMBL AK064950 [CTCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGG GGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGACCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ]
[+] EMBL AK104793 [ TCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ]
[+] EMBL AK106154 [ TCTCGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCT CCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACTCCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGTTCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCTACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGCGCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGTGCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCGGGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACGGCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCCTGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGCGGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ]
[+] EMBL CA754241 [ GCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCTCGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGAGGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGGAGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCATGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGCACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGCCGCGCTGGCGCAGCCTCCCACGGGGAAGACGGCTGGGCCGGgc ]
[+] EMBL AU064146 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCG TCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGANTTGCGCATCGACAGCAAGAACTCGCCGTGCCTNCGCCCCGACGGCGGCCCGGGTTGCCG CACGACCTTGAGGCGTACCTG AACTNATCGACGGGTT AAGGGGACGGGCCG CCGTTCCGGAAGACGGGGGCGAAGGTGATCCCGTTTTTAAGTTTAANAGGG]
[+] EMBL AU064563 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGNCCTGGCG TCCTCGTGGCCGACGAGATCGCCACCANCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGNGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATAGTCAACGCC GGCGACATGGTCACCAAGGTGCCCNGCGTNGCGTCGCGCCTGCC GGTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGTNCCGCATC ]
[+] EMBL AU064925 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCG CCTGGCGGTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATNGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCG CGCGCCTGCC GNTCACCAAGGAGCAGTANCAGCACGTC ]
[+] EMBL AU065141 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAG AACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTTGCGCGGNGCCTTCCGGTTAACAAAGGAG ]
[+] EMBL AU065117 [ GGAGCTCAGCATCACGGTCGTCGGCCACAGCCTCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGCCGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCC AAGGTCGGGAACGCCGCGTTCGTGGACAAGCTCC AGAAGAAACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCCNGGCNACATGGTCACCAAGGTGCCCGGCGTtngc ]
[+] EMBL AU101257 [ GCCGTGGTCTCCTTCGGCGGGCCCAAAGGTCGGNAACGCCGCGTTCGTGGACAAGCTCCAAGAAG ACGGCAGGGTGAACGTCNTGCGCATCGTCAACGCC GGCGACATGGTCACCAAGGTGCCCGGCGTGGCGCCGCGCCTGCC GCTCACCAAGGAGCAGTACCAGCACGTCGGCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGGCGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCCGCCCGTTCCGGCAC ]
consensusID : consensus_15225#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[CCACCCAAGGGACCAGGTACCCAGCAACGTCCGGCCGGGAGCTGCGCATGCGACCAAGCCAAGAAACGTCGCCCGTGCCCTCCGCCCNTGACGCCCGNCCCGGCGTCCAGCCACGACCTGGAGGCGTACCTGCACACTCATCGACGGTTCACGGGGACAGGCCGCCANTGTTCCGGCACNNACGCGCCACAGCAGCGTGATCCAGGCTNCTNCAGTTCGCAGAGGGGGAACGTGAAGAAGGAGTACAGTGAACCAGCAGCCCAGGGAGCTCGGCAGTCGACCCCTCGGCANCACAGGTGGACAGTCAGCCCAGGACCATGGCAGTACCGGGGAACTGCGCCCGTCGCGAGCCCACTCCCTCCGTGAGACGACCGAGATTGACGTCTTCTTGCCAAGAGCCACTTAATTATGTAAATTTTTGTAGAAGCAAGACCTACAATTGCTTTCGTTAGTCCAGGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCACTTTGACGTATGTATGTACAAGTACATACCNAACTATTATACTTGCAAAAAA]
[+] EMBL BI806983 [CCACCCAAGGGACCAGGTACCCAGCAACGTCCGGCCGGGAGCTGCGCATGCGACCAAGCCAAGAAACGTCGCCCGTGCCCTCCGCCCNTGACGCCCGNCCCGGCGTCCAGCCACGACCTGGAGGCGTACCTGCACACTCATCGACGGTTCACGGGGACAGGCCGCCANTGTTCCGGCACNNACGCGCCACAGCAGCGTGATCCAGGCTNCTNCAGTTCGCAGAGGGGGAACGTGAAGAAGGAGTACAGTGAACCAGCAGCCCAGGGAGCTCGGCAGTCGACCCCTCGGCANCACAGGTGGACAGTCAGCCCAGGACCATGGCAGTACCGGGGAACTGCGCCCGTCGCGAGCCCACTCCCTCCGTGAGACGACCGAGATTGACGTCTTCTTGCCAAGAGCCACTTAATTATGTAAATTTTTGTAGAAGCAAGACCTACAATTGCTTTCGTTAGTCCAGGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCACTTTGACGTATGTATGTACAAGTACATACCNAACTATTATACTTGCAAAAAA]
consensusID : consensus_15225#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 399 fasta sequence
[CGACCTGGAGGGGGTACTTGCACCTCATCGNCGGGTTCACGGGGACGGGCCGCCNGTTCCGGCANTAACGCGCGCCGCAGCGTGATCCGGGTTGCTGCAGTTGCAGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC-GCCCGGGAG-CTC-GGCGTCGACCCC-TCGGCG-CCGGT-GGACGTCGGCCGG-AGCATGGCGTACGGGAACTGCG-CCGTCGCGAG-CCCCTCCTCGTGAGACGACGAGA-TTGACGTC-TTCTTCCAAGAG-CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA]
[+] EMBL AU184107 [CGACCTGGAGGGGGTACTTGCACCTCATCGNCGGGTTCACGGGGACGGGCCGCCNGTTCCGGCANTAACGCGCGCCGCAGCGTGATCCGGGTTGCTGCAGTTGCAGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTCGGGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA]
[+] EMBL AU094966 [ aCGGGTTCACGGGGACGGGCCGCC GTTCCGGCA CGACGCGCGCCNCAGCGTGATCC GGCTGCTGCAGTTGCAGAGGGGGAACNTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA]
[+] EMBL AU174078 [ AGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGCGGCCCGGGAGNCTC GGCGTCGACCCCTTNGGCGCCCGGTGGGACGTCGGCCGGAAGCATGGCGTACGGGAACTGCGCCCGTCGCGAGCCCCCTCCTCGTGAGACGACGAGATTTGACGTCTTTCTTCCAAGAGCCCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA]
[+] EMBL AU182862 [ AGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA]
[+] EMBL AU183036 [ AGAGGGGGAACGTGAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTGACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA]
[+] EMBL OSR08181A [ GAAGAAGGAGTACGTGAACCGC GCCCGGGAG CTC GGCGTCGACCCC TCGGCG CCGGT GGACGTCGGCCGG AGCATGGCGTACGGGAACTGCG CCGTCGCGAG CCCCTCCTCGTGAGACGACGAGA TTNACGTC TTCTTCCAAGAG CCCTTAATTATGTAAATTTTTGTAGAAGCAGACCAACAATTCTTTCGTTAGTCAGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCATTTGACGTATGTATGTACAGTACATAAAAACTATTATACTTGCAAAAA]
consensusID : consensus_15225#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence
[TAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGNAGTCTCGTAGGCCGNCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAC]
[+] EMBL OSS15138A [TAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAGTGGTAGTAGTAGTTTCGTTTGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGCCGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGTGTCGTGCCAAGGCATGCCTCGCCGACGCCACAGCAGCGGGCGGCGCCGCGACGGAGGCCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGNAGTCTCGTAGGCCGNCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAC]
consensusID : consensus_15225#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 257 fasta sequence
[GCTGCTCAGTTCCAGAGGGGGAAACGTGAAGAAAGGAGTACGTGAACCGCGCCCTCGGGATGTCTCGGCGTCGACACACACTCGGCCCCGGTGACTCGCCGGAGCATGGCGTACGGGAACTGCGCCGTCGCGAGCCCCTCCTCGTGAGACGACGAGATTGACGTCTTCTTCCAAGAGCCCTTAATTATGTAAATTTTTGTAGAAGCAGACCCACAATTCTTTCGTTTGTCAGGGTTTTCAACCGGGGAAAAAAGTAT]
[+] EMBL BI811160 [GCTGCTCAGTTCCAGAGGGGGAAACGTGAAGAAAGGAGTACGTGAACCGCGCCCTCGGGATGTCTCGGCGTCGACACACACTCGGCCCCGGTGACTCGCCGGAGCATGGCGTACGGGAACTGCGCCGTCGCGAGCCCCTCCTCGTGAGACGACGAGATTGACGTCTTCTTCCAAGAGCCCTTAATTATGTAAATTTTTGTAGAAGCAGACCCACAATTCTTTCGTTTGTCAGGGTTTTCAACCGGGGAAAAAAGTAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 CCACCCAAGGGACCAGGTACCCAGCAACGTCCGGCCGGGAGCTGCGCATGCGACCAAGCC 60
consensus_15225#0 ------------------------------------------------------------
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 -----------------------------------------------------CGACCTG 7
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 AAGAAACGTCGCCCGTGCCCTCCGCCCNTGACGCCCGNCCCGGCGTCCAGCCACGACCTG 120
consensus_15225#0 --------------------------------------------------------CTCT 4
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 GAGGGGGTACTTGCACCTCATCGNCGGGTTCACGGGGACGGGCCGCCNGT--TCCGGCAN 65
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 GAGGCG-TACCTGCACACTCATCGACGGTTCACGGGGACAGGCCGCCANTGTTCCGGCAC 179
consensus_15225#0 CGCTCGCACACAACTAATAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAG 64
consensus_15225#3 -----------------TAACCAACGAAACCACGAGCAGCGGCTGATCGGTAAGCGGTAG 43
consensus_15225#2 TAACGCGC-GCCGCAGCGTGATCCGGGTTGCTGCAGTTG-CAGAGGGGGAA-CGTGAAGA 122
consensus_15225#4 --------------------------GCTGCT-CAGTTC-CAGAGGGGGAAACGTGAAGA 32
consensus_15225#1 NNACGCGCCACAGCAGCGTGATCCAGGCTNCTNCAGTTCGCAGAGGGGGAA-CGTGAAGA 238
consensus_15225#0 TGGTA-GTAGTAGTTTCGTT-TGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGC 122
consensus_15225#3 TGGTA-GTAGTAGTTTCGTT-TGTACGTTGACCCAAGCAGCAGATGCCAATTGCAGCAGC 101
* * ** **** * * * **
consensus_15225#2 A-GGAGTAC-GTGA-ACC-GCGCCCGGGAG----CTCGGC-GTCGACCC---CTCGGCGC 170
consensus_15225#4 AAGGAGTAC-GTGA-ACC-GCGCCCTCGGGATGTCTCGGC-GTCGACACACACTCGGCCC 88
consensus_15225#1 A-GGAGTACAGTGA-ACCAGCAGCCCAGGGA--GCTCGGCAGTCGACCCCTCGGCANCAC 294
consensus_15225#0 CGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGT-GTCGTGCCAAGGCATGCCT 181
consensus_15225#3 CGCGGTCACCTCGCCACCGGCCGCCGCGCAGGTGCACGGT-GTCGTGCCAAGGCATGCCT 160
* ** * *** ** ** * * *** **** * *
consensus_15225#2 CGGTGGAC-GTCGGC--C--GGAGCATGGC-GTAC--GGGAACTGCGCC-GTCGCGAGCC 221
consensus_15225#4 CGGTGA----CTCGC--C--GGAGCATGGC-GTAC--GGGAACTGCGCC-GTCGCGAGCC 136
consensus_15225#1 AGGTGGACAGTCAGC--CCAGGACCATGGCAGTACCGGGGAACTGCGCCCGTCGCGAGCC 352
consensus_15225#0 CGCCGACGCCACAGCAGCGGGCGGCGCCGCGGCGGGAGCAGTCGCCGCTGAACCCGAGCT 241
consensus_15225#3 CGCCGACGCCACAGCAGCGGGCGGCGCCGCG----------------------------- 191
* * ** * * * **
consensus_15225#2 C------------------CTCCTCGTGAGACGAC---------------GAGATTGACG 248
consensus_15225#4 C------------------CTCCTCGTGAGACGAC---------------GAGATTGACG 163
consensus_15225#1 CAC---------------TCCCTCCGTGAGACGACC--------------GAGATTGACG 383
consensus_15225#0 CGCAGTCGATCCGGTCGGCCTCCTCCGGCACCGAGCTCGCAGGTTCCGCGGCGACGGAGG 301
consensus_15225#3 -----------------------------------------------------ACGGAGG 198
* ** *
consensus_15225#2 TCTTCTT-CCAAGAGCC-CTTAA-TTATGTAAATTTTTGTAGAAGCA-GACCAACAATT- 303
consensus_15225#4 TCTTCTT-CCAAGAGCC-CTTAA-TTATGTAAATTTTTGTAGAAGCA-GACCCACAATT- 218
consensus_15225#1 TCTTCTTGCCAAGAGCCACTTAA-TTATGTAAATTTTTGTAGAAGCAAGACCTACAATTG 442
consensus_15225#0 CCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGCAGGTGCCGA 361
consensus_15225#3 CCTCCCGGGCGCACATCGCCAACCTTGACCGGGTTCTCGGGAAGCCACCGNAGTCTCGTA 258
** * * * * * ** ** * * * **
consensus_15225#2 CTTTCGTTAGTC--AGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCA-TTTGACGTA 360
consensus_15225#4 CTTTCGTTTGTC--AGGGTTTTCAACCGGGGAAAAAAGTAT------------------- 257
consensus_15225#1 CTTTCGTTAGTCCAGGGGGTGTCAGCGGGAAAAAAGATTTTCCCTTGTCACTTTGACGTA 502
consensus_15225#0 GGCCGGCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAGCAGCAGGACGGGGAGCTGG 421
consensus_15225#3 GGCCGNCGAGCCACGCGGCGGCGAGCAAGCAGGAGCGGCAC------------------- 299
* * ** * * * *
consensus_15225#2 TGTATGTACA-GTACATAA-AAACTATTATACTTGCAAAAA------------------- 399
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 TGTATGTACAAGTACATACCNAACTATTATACTTGCAAAAAA------------------ 544
consensus_15225#0 AGCCGCTCAACGTCAGGCACGGCCTGCTCAACGCGCTCAACCTGTCCTTCTTCGTGCCCA 481
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 TGCCCGGGATGCGGGCCCGCACCGCCGCCGACGAGCACATGTCGCCTCGCAGCCTCATGC 541
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 ACATGCAGCAGCTCCTCTCCGCCGACTCCCCGCGCGCCTCGCCGAGGAGCACCATCGCGC 601
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 CGCGCTGGCGCAGCCTCCACGGGGAAGACGGCTGGGCCGGCCTCCTCGACCCGCTCGACT 661
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 CCGACCTCCGCCGCGAGCTCCTCCGCTACGGCGACTTCGTCCAGGCGGCGTACCAGGCGT 721
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 TCCACTCGCTGCCCACCGCGTCGGCGAGGCACCGCGGGCTCATGCTCCCCGACCGCTCCT 781
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 ACCGCCCGACGCGGAGCCTCTTCGCCACCTCGGCGCTGTCCATGCCGCCGTGGGCGAAGC 841
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 GCCCCAACACCCCCGAGTGGCTCACGCAGCAGTCCAACTGGATCGGATACGTCGCCGTGT 901
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 GCGAGTCCGAGCGGGAGGTCGCCCGCATGGGCCGCCGCGACATCGCCATCGTGCTGCGCG 961
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 GGACGGCCACCTGCCTCGAGTGGGCGGAGAACCTGCGCGCCTCGCTCGTGCCTCTCGACG 1021
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 GCGAGAGCGGCGAAGGCGGCGGGCAGGAGGAGCCCAAGGTGGCACGGGGATTCCGGAGCC 1081
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 TGTACAAGACGGCAGGGGAGAAGGTGAAGAGCCTCTCGGAGGAGGTCATGGGCGAGGTGC 1141
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 GGCGGCTCATGGAGAAGTACAAGGGCGAGGAGCTCAGCATCACGGTCGTCGGCCACAGCC 1201
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 TCGGCGGCGCCCTGGCGCTCCTCGTGGCCGACGAGATCGCCACCACCGTCCCCGACGCGC 1261
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 CGCCCGTCGCCGTGGTCTCCTTCGGCGGGCCCAAGGTCGGGAACGCCGCGTTCGTGGACA 1321
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 AGCTCCAGAAGAACGGCAGGGTGAACGTCCTGCGCATCGTCAACGCCGGCGACATGGTCA 1381
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 CCAAGGTGCCCGGCGTGGCGCCGCGCCTGCCGCTCACCAAGGAGCAGTACCAGCACGTCG 1441
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 GCGCGGAGCTGCGCATCGACAGCAAGAACTCGCCGTGCCTCCGCCCCGACGCCGGCCCGG 1501
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 ------------------------------------------------------------
consensus_15225#4 ------------------------------------------------------------
consensus_15225#1 ------------------------------------------------------------
consensus_15225#0 CGTGCCGCCACGACCTGGAGGCGTACCTGCACCTCATCGACGGGTTCACGGGGACGGGCC 1561
consensus_15225#3 ------------------------------------------------------------
consensus_15225#2 -----------------------------------------------------
consensus_15225#4 -----------------------------------------------------
consensus_15225#1 -----------------------------------------------------
consensus_15225#0 GCCCGTTCCGGCACACGGGGGCGAAGGTGATCCCGTTTTTAAGTTTAANAGGG 1614
consensus_15225#3 -----------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||