cluster # 15233

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Oryza sativa
cluster # 15233 cluster # 15233 Sequences # 20 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15233#0 length = 1596 sequences # 18

consensus_15233#1 length = 346 sequences # 1
consensus_15233#2 length = 225 sequences # 1

consensusID : consensus_15233#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 18
consensus length = 1596
fasta sequence

                              [TCTCGTCTCCTCGTCTTCTCGCCGCCGCCGCGAGCGGAATCCCCCTCTCTCCGTCTAAACCTCGCCGCCGCGGCGAAG-AAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGGGGCTGTCGCTGCGGTGCGGCGACTGCGGCGTGCTGCTGCGGA-CGTGGAGGAGGCGCAGGCGCACGCCGA-GGCCACCAACCACGCCAACTTCTCCGAGTCCACCGAGGCCGTCCTCAACCTCGTNTGCGCCGCCTGCGGAAAGCCCTGCCGNTCCCAGACCGAGGTGGACCTGCACACCAAGCGCACGGGCCACACGGAGTTCACTGACAAGACCATGGAGGCGGCCAAGCCAATTGATCTCGAGGCGGCGCCGCCGAAGCCGGCCGGCGAGGCCATGGATGTCGATGCCTCGGCAAGCGCCGAGCCACAAGAGATGGTGGCGCCGGAGGTTAACAAGGAGATGCTGGCGGACCTCGAGGCGATGGGGTTCACGACGGCGCGTGCCACTAGGGCACTTCATTTTTCTGGTAATAGCACTATTGAAGGTGCCATTAACTGGCTTTCCGAGCACCAAGAAGATCCAGATATTGACGAACCGCTTCTGGTACCGGCTAATACAATAACTGAGGCTAATAAACCCTCTTTGTCTCCTGAGGAAATGAAGATTAAAGCTCAGGAATTAAGGGAACGTGCTCGTAAAAAGAAAGAAGAAGAAGAGAGAAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCCGGTTGAAGAGAAGAAGAGGGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA-GCAGAA-CAAGGATGA-CGATGCTAAAGTGAAGAGGGCTT-TTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGACCAACGCTACATTT-CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA-CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC-GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCA-CGAGATGGAAGGAT-CTTGGAAAGAATTTCCCAATATATTTCTTCCAACGATTAA-AGCAATA-AAACATAAATACCCACAAAAAAAAGAAGCTTTTTCCTAATTTTTCTGCAAC]

[+] EMBL C91704               [TCTCGTCTCCTCGTCTTCTCGNCGCCGCCGCGAGCNGAATCCCC  CTCTCCGTCTAAACCTCGCCGCCGCGGCGAAN AAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGGGGCTGTCGCTGCGGTGCGGCGACTGCGGCGTGCTGCTGCGGA CGTGGAGGAGGCGCAGGCGCACGCGAA GGCCACCAACCACGCCAACTTCTCCGAGTTCACCGAGGCCGTNCTCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL C26300               [   CGTCTCCTCGTCTTCTCGCCGCCGCCGCGAGCGGAATCCCCCTCTCTCCGTCTAAACCTCGCCGCCGCGGCGAAG AAAAGCACCTCCCTCTTCGCCGCCGGCCGCCGGCAATGGCGGGGCTGTCGCTGCGGTGCGGCGACTGCGGCGTGCTGCTGCGGA GGTGGAGGAGGCGCAGGCGCACG CGA GGCCACCAACCACGCCAACTTCTCCNAGTCCACCGAGGCCGTCCTNAACCTCGTNTGCGCCGCCTGCGGAAAGCCCTGCCGNTCCCAGACCGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AK102956             [      CTCCTCGTCTTCTCGCCGCCGCCGCGAGCGGAATCCCCCTCTCTCCGTCTAAACCTCGCCGCCGCGGCGAAGCAAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGGGGCTGTCGCTGCGGTGCGGCGACTGCGGCGTGCTGCTGCGGAGCGTGGAGGAGGCGCAGGCGCACGCCGA GGCCACCAACCACGCCAACTTCTCCGAGTCCACCGAGGCCGTCCTCAACCTCGTCTGCGCCGCCTGCGGCAAGCCCTGCCGCTCCCAGACCGAGGTGGACCTGCACACCAAGCGCACGGGCCACACGGAGTTCACTGACAAGACCATGGAGGCGGCCAAGCCAATTGATCTCGAGGCGGCGCCGCCGAAGCCGGCCGGCGAGGCCATGGATGTCGATGCCTCGGCAAGCGCCGAGCCACAAGAGATGGTGGCGCCGGAGGTTAACAAGGAGATGCTGGCGGACCTCGAGGCGATGGGGTTCACGACGGCGCGTGCCACTAGGGCACTTCATTTTTCTGGTAATAGCACTATTGAAGGTGCCATTAACTGGCTTTCCGAGCACCAAGAAGATCCAGATATTGACGAACCGCTTCTGGTACCGGCTAATACAATAACTGAGGCTAATAAACCCTCTTTGTCTCCTGAGGAAATGAAGATTAAAGCTCAGGAATTAAGGGAACGTGCTCGTAAAAAGAAAGAAGAAGAAGAGAGAAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCCGGTTGAAGAGAAGAAGAGGGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CAAGGATGA CGATGCTAAAGTGAAGAGGGCTT TTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGACCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCA CGAGATGGAAGGAT CTTGGAAAGAATTTCCCAATATATTTCTTCCAACGATTAA AGCAATA AAACATAAATACCCACAtga                               ]
[+] EMBL OSS1405A             [                  TCGCCGCCGCCGCGAGCGGAATCCCCCTCTCTCCGTCTAAACCTCGCNGNCGCGGCGAAG AAAAGCACCTCCCTCTTCGNCGACGCCCGNCGGCAATNGCGGGGCTGTCGCTGCGGTGCGGCGACTGCGGCGTGCTGCTGCGGA NGTGGAGGAGGCGCAGGCGCACGCCGAGGGCCACCAACCACGCCAACTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BI118648             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TACAATAACTGAGGCTAATAGGCCCTCTTTGTCTCCTGAGGAAATGAAGATTAAAGCTCAGGAATTAAGGGAACGTGCTCGTAAAAAGAAAGAAGAAGAAGAGAGAAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATTGGTAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCACGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAG AAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGGAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCCGGTTGAAGAGAAGAAGAGTGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CAAGGATGA CGATGCTAAAGTGAAGAGGGCTT TTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGTCCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGA                                                                                                                                                                                                                                         ]
[+] EMBL AK062243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TAATAAACCCTCTTTGTCTCCTGAGGAAATGAAGATTAAAGCTCAGGAATTAAGGGAACGTGCTCGTAAAAAGAAAGAAGAAGAAGAGAGAAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCCGGTTGAAGAGAAGAAGAGGGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CAAGGATGA CGATGCTAAAGTGAAGAGGGCTT TTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGACCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCA CGAGATGGAAGGAT CTTGGAAAGAATTTCCCAATATATTTCTTCCAACGATTAA AGCAATA AAACAT                                             ]
[-] EMBL CB642501             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGAAGAGAGAGGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCCGGTTGAAGAGAAGAAGAGGGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CAAGGATGA CGATGCTAAAGTGAAGAGGGCTT TTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGACCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCA CGAGATGGAAGGAT CTTGGAAAGAATTTCCCAATATATTTCTTCCAGCGATTAA AGCAATA AAACATAAATACCCACAAAAAAAAG                          ]
[+] EMBL CB000399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AGAGAGAAGGATGGAAAGAGAAAGGGAGAAGGCCTGGATTCGGATCGGNAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCTGGTTGAAGAGAAGAAGAGTGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CAAGGATGA CGATGCTAAAGTGAAGAGGGCTT TTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGTCCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCAC                                                                                                                                                                                 ]
[+] EMBL CB000835             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCTGGTTGAAGAGAAGAAGAGTGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA998429             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTGAAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL D43344               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACTGCGAAGACTTGAGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACCACCTCCGGTTGAAGAGAAGAAGAGGGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CAAGGATNA CGATGCTAAAGTNAAGAGGGCTT TTCAANCACTCCTTNCCTACATTNGCAATGTAGCTAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BQ909162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACCTGTCAGGCCAGCCACAAA GCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA  AAGGATGA CGATGCTAAAGTGAAGAGGGCTTGTTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGTCCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCA CGAGATGGAAGGAT CTTGGAAAGAATTTCCCAATATATTTCTTCC ACGATTCA AGCAATA AAACATAAATACCCACAAAA                               ]
[+] EMBL AU166410             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AAAGGCCGAGCGCATGAGGGATTGCTTAAGAAATCTTAAGCA GCAGAA CAAGGATGA CGATGCTAAAGTGAAGAGGGCTT TTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGACCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATCGGTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAAaaa                                                                                                                                                        ]
[+] EMBL BM420544             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GATTGCTTAAGAAATCTTAACCACCCAGAACCAAGGATGACCGATGCTAAAGTGAAGAGGGCTT TTCAAACACTCCTTACCTACACTTGCAATGTAGCTAAAAATCCTGACGAGGAGAAATTCAGGAAGATCAGACTGTCCAACGCTACATTT CAGGAGAGGGTT GCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACACCTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCNCCAGATTGCA CGAGATGGAAGGAT CTTGGAAAGAATTTCCCAATATATTTCTTCCAACGATTAA AGC ATA AAACATAAATACCCAAAAA                                ]
[+] EMBL BQ906118             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             AATTCAGGAAGATCAGACTGTCCAACGCTACATTTCCAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCAC AACGCACAGAAATATTGATATTGAGCGAAaaaa                                                                                                                                                       ]
[+] EMBL OSR00291A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGGAAGATCAGACTGACCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTT                                                                                                                                                    ]
[+] EMBL AU097616             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGAAGATCAGACTGACCAACGCTACATTT CAGGAGAGGGTTGGCAATCTGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACA CTGCTGGAGCCGAGCTGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTaaaaaaa                                                                                                                                   ]
[-] EMBL CB965332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AATCCTTTCTTTGGAGTCCTTTAAATC GTATAGAATTTCCATGTACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCACCGAGATGGAAGGATNCTTGGAAAGAATTTCCCAATATATTTCTTCCAACGATTAATAGCAATACAAACATAAATACCCACATGAACTTTAAGCTTTTTCCTAATTTTTCTGCAAC]




>consensus_15233#0
TCTCGTCTCCTCGTCTTCTCGCCGCCGCCGCGAGCGGAATCCCCCTCTCTCCGTCTAAAC
CTCGCCGCCGCGGCGAAGAAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGG
GGCTGTCGCTGCGGTGCGGCGACTGCGGCGTGCTGCTGCGGACGTGGAGGAGGCGCAGGC
GCACGCCGAGGCCACCAACCACGCCAACTTCTCCGAGTCCACCGAGGCCGTCCTCAACCT
CGTNTGCGCCGCCTGCGGAAAGCCCTGCCGNTCCCAGACCGAGGTGGACCTGCACACCAA
GCGCACGGGCCACACGGAGTTCACTGACAAGACCATGGAGGCGGCCAAGCCAATTGATCT
CGAGGCGGCGCCGCCGAAGCCGGCCGGCGAGGCCATGGATGTCGATGCCTCGGCAAGCGC
CGAGCCACAAGAGATGGTGGCGCCGGAGGTTAACAAGGAGATGCTGGCGGACCTCGAGGC
GATGGGGTTCACGACGGCGCGTGCCACTAGGGCACTTCATTTTTCTGGTAATAGCACTAT
TGAAGGTGCCATTAACTGGCTTTCCGAGCACCAAGAAGATCCAGATATTGACGAACCGCT
TCTGGTACCGGCTAATACAATAACTGAGGCTAATAAACCCTCTTTGTCTCCTGAGGAAAT
GAAGATTAAAGCTCAGGAATTAAGGGAACGTGCTCGTAAAAAGAAAGAAGAAGAAGAGAG
AAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTGAAGC
CAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTGAGAA
AGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGGCTGA
AAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCGCACC
ACCTCCGGTTGAAGAGAAGAAGAGGGCATTACCTGTCAGGCCAGCCACAAAGGCCGAGCG
CATGAGGGATTGCTTAAGAAATCTTAAGCAGCAGAACAAGGATGACGATGCTAAAGTGAA
GAGGGCTTTTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACGAGGA
GAAATTCAGGAAGATCAGACTGACCAACGCTACATTTCAGGAGAGGGTTGGCAATCTGCA
TGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGTTCTT
GTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACACTGCTGGAGCCGAGCTGAA
TTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATCGTATAGAATTTCCATGTACA
CTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATATTGA
GCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCACGAGATGGAAGGATCT
TGGAAAGAATTTCCCAATATATTTCTTCCAACGATTAAAGCAATAAAACATAAATACCCA
CAAAAAAAAGAAGCTTTTTCCTAATTTTTCTGCAAC

consensusID : consensus_15233#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence

                              [GAAGGATCTTGGAAAGAATTNCCCAATATATTTCTNCCAACGATTAAANCAATAAAACATAAATCCCCACATGAACTTTAAGCTTTTTCCTAATTTTTCTGCAACTTAGTTTGACAGGACTCGAGTCAGCTTCGTGCATGAACAGTTCCATCGTATNCAATTTTCAAGCTGATTGTANCCTAGCTACTGTTGGGTCCTGATGCTGCTTGGGCATGCTCCAGTAGAGGGAGTCAGTAGGGGGATTACAGGGTACTAGTTAAAAATGAGTATGTCTACCAATCTCCATGTCTTCGAATTATGTCCATATATTTCCAAATCTGTTGCATATTTCCAAAAAAAAAAAAAA]

[+] EMBL AU029692             [GAAGGATCTTGGAAAGAATTNCCCAATATATTTCTNCCAACGATTAAANCAATAAAACATAAATCCCCACATGAACTTTAAGCTTTTTCCTAATTTTTCTGCAACTTAGTTTGACAGGACTCGAGTCAGCTTCGTGCATGAACAGTTCCATCGTATNCAATTTTCAAGCTGATTGTANCCTAGCTACTGTTGGGTCCTGATGCTGCTTGGGCATGCTCCAGTAGAGGGAGTCAGTAGGGGGATTACAGGGTACTAGTTAAAAATGAGTATGTCTACCAATCTCCATGTCTTCGAATTATGTCCATATATTTCCAAATCTGTTGCATATTTCCAAAAAAAAAAAAAA]




>consensus_15233#1
GAAGGATCTTGGAAAGAATTNCCCAATATATTTCTNCCAACGATTAAANCAATAAAACAT
AAATCCCCACATGAACTTTAAGCTTTTTCCTAATTTTTCTGCAACTTAGTTTGACAGGAC
TCGAGTCAGCTTCGTGCATGAACAGTTCCATCGTATNCAATTTTCAAGCTGATTGTANCC
TAGCTACTGTTGGGTCCTGATGCTGCTTGGGCATGCTCCAGTAGAGGGAGTCAGTAGGGG
GATTACAGGGTACTAGTTAAAAATGAGTATGTCTACCAATCTCCATGTCTTCGAATTATG
TCCATATATTTCCAAATCTGTTGCATATTTCCAAAAAAAAAAAAAA

consensusID : consensus_15233#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 225
fasta sequence

                              [TCGCCGCCGCCGGAGCGGAATCCCCCTCTCTCCGTCTAAACCTCGCCGCCGAGGGAAGAAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGGGGCTGTCGCTGCGGTGCGGCGACTGCGGGCGTGCTGCTGCGGAGGTGGAGGAGGCGCAGGCGCACGCGAGGNCACCAACCACGGCACTTNTTCGAGTCCACGAGGTGGACTTCACACCAAGCGAC]

[+] EMBL OSS1629A             [TCGCCGCCGCCGGAGCGGAATCCCCCTCTCTCCGTCTAAACCTCGCCGCCGAGGGAAGAAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGGGGCTGTCGCTGCGGTGCGGCGACTGCGGGCGTGCTGCTGCGGAGGTGGAGGAGGCGCAGGCGCACGCGAGGNCACCAACCACGGCACTTNTTCGAGTCCACGAGGTGGACTTCACACCAAGCGAC]




>consensus_15233#2
TCGCCGCCGCCGGAGCGGAATCCCCCTCTCTCCGTCTAAACCTCGCCGCCGAGGGAAGAA
AAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGGGGCTGTCGCTGCGGTGCGGC
GACTGCGGGCGTGCTGCTGCGGAGGTGGAGGAGGCGCAGGCGCACGCGAGGNCACCAACC
ACGGCACTTNTTCGAGTCCACGAGGTGGACTTCACACCAAGCGAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15233#0      TCTCGTCTCCTCGTCTTCTCGCCGCCGCCGCGAGCGGAATCCCCCTCTCTCCGTCTAAAC 60
consensus_15233#2      ------------------TCGCCGCCGCCG-GAGCGGAATCCCCCTCTCTCCGTCTAAAC 41
consensus_15233#1      ---------------------GAAGGATCTTGGAAAGAATTNCCCAATATATTTCTN--- 36
                                                   *  *    ****  ***  * *   ***    

consensus_15233#0      CTCGCCGCCGCGGCGAAGAAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGG 120
consensus_15233#2      CTCGCCGCCGAGG-GAAGAAAAGCACCTCCCTCTTCGCCGCCGCCCGCCGGCAATGGCGG 100
consensus_15233#1      CCAACGATTAAANCAATAAAACATAAATCCCCACATGAACTTTAAGCTTTTTCCTAATTT 96
                       *   *          *  ***   *  ****     *                 *     

consensus_15233#0      GGCTGTCGCTGCGGTGCGGC--GACTGCGG-CGTGCTGCTGCGGACGTGGAGGAGGCGCA 177
consensus_15233#2      GGCTGTCGCTGCGGTGCGGC--GACTGCGGGCGTGCTGCTGCGGAGGTGGAGGAGGCGCA 158
consensus_15233#1      TTCTGCAACT-TAGTTTGACAGGACTCGAGTCAGCTTCGTGCATGAACAGTTCCATCGTA 155
                         ***   **   **  * *  ****   * *    *  ***       *      ** *

consensus_15233#0      GGCGCACGCCGAGGCCACCA-ACCACGCCAACTTCTCCGAGTCCACCGAGGCCGTCCTCA 236
consensus_15233#2      GGCGCACGC-GAGGNCACCA-ACCACGGCA-CTTNTTCGAGTCCAC-GAGGTGGACTTCA 214
consensus_15233#1      TNCAATTTTCAAGCTGATTGTANCCTAGCTACTGTTGGGTCCTGATGCTGCTTGGGCATG 215
                         *        **   *    * *    *  **  *  *     *    *   *      

consensus_15233#0      ACCTCGTNTGCGCCGCCTGCGGAAAGCCCTGCCGNTCCCAGACCGAGGTGGACCTGCACA 296
consensus_15233#2      CACCAAGCGAC------------------------------------------------- 225
consensus_15233#1      CTCCAGTAGAGGGAGTCAGTAGGGGGATTACAGGGTACTAGTTAAAAATGAGTATGTCTA 275
                         *                                                         

consensus_15233#0      CCAAGCGCACGGGCCACACGGAGTTCACTGACAAGACCATGGAGGCGGCCAAGCCAATTG 356
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      CCAATCTCCATGTCTTCGAATTATGTCCATATATTTCCAAATCTGTTGCATATTTCCAAA 335
                                                                                   

consensus_15233#0      ATCTCGAGGCGGCGCCGCCGAAGCCGGCCGGCGAGGCCATGGATGTCGATGCCTCGGCAA 416
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      AAAAAAAAAAA------------------------------------------------- 346
                                                                                   

consensus_15233#0      GCGCCGAGCCACAAGAGATGGTGGCGCCGGAGGTTAACAAGGAGATGCTGGCGGACCTCG 476
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      AGGCGATGGGGTTCACGACGGCGCGTGCCACTAGGGCACTTCATTTTTCTGGTAATAGCA 536
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      CTATTGAAGGTGCCATTAACTGGCTTTCCGAGCACCAAGAAGATCCAGATATTGACGAAC 596
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      CGCTTCTGGTACCGGCTAATACAATAACTGAGGCTAATAAACCCTCTTTGTCTCCTGAGG 656
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      AAATGAAGATTAAAGCTCAGGAATTAAGGGAACGTGCTCGTAAAAAGAAAGAAGAAGAAG 716
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      AGAGAAGGATGGAAAGAGAAAGGGAGAAGGAAAGGATTCGGATCGGTAAAGAGCTTCTTG 776
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      AAGCCAAAAGAATTGAGGAGGATAATGAAAGGAAACGCATGATAGAACTGCGAAGACTTG 836
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      AGAAAGAAGAGGAGAAAAGAGCTAGAGAAAAAATCCGTCAGAAACTGGAAGAGGACAAGG 896
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      CTGAAAGGAGAAGGAAACTTGGATTGCCCCCGGAAGATCCAGCTGCTCCTAAACCAAGCG 956
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      CACCACCTCCGGTTGAAGAGAAGAAGAGGGCATTACCTGTCAGGCCAGCCACAAAGGCCG 1016
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      AGCGCATGAGGGATTGCTTAAGAAATCTTAAGCAGCAGAACAAGGATGACGATGCTAAAG 1076
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      TGAAGAGGGCTTTTCAAACACTCCTTACCTACATTGGCAATGTAGCTAAAAATCCTGACG 1136
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      AGGAGAAATTCAGGAAGATCAGACTGACCAACGCTACATTTCAGGAGAGGGTTGGCAATC 1196
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      TGCATGGAGGCATAGAGTTTCTCCAGCTCTGTGGATTTGAGAAACTTGAAGGCAACGAGT 1256
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      TCTTGTTCTTGGCAAGGGACAAGGTTGACAAGGCCGTCCTGAACACTGCTGGAGCCGAGC 1316
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      TGAATTCTGCTATCACTAATCCTTTCTTTGGAGTCCTTTAAATCGTATAGAATTTCCATG 1376
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      TACACTTGAACCTCTCTGTTTCACCTTTGCTTGAAGCACAAATGCACAGAAATATTGATA 1436
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      TTGAGCGAATGATCTTTCACTGCGCTCACTTCTGGTCGCCAGATTGCACGAGATGGAAGG 1496
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      ATCTTGGAAAGAATTTCCCAATATATTTCTTCCAACGATTAAAGCAATAAAACATAAATA 1556
consensus_15233#2      ------------------------------------------------------------
consensus_15233#1      ------------------------------------------------------------
                                                                                   

consensus_15233#0      CCCACAAAAAAAAGAAGCTTTTTCCTAATTTTTCTGCAAC 1596
consensus_15233#2      ----------------------------------------
consensus_15233#1      ----------------------------------------