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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1178 fasta sequence
[CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCAGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGATTTTAGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGCAAG-CCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAGAA]
[+] EMBL CF333667 [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCAGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGA ]
[+] EMBL CF334833 [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCAGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGG ]
[+] EMBL CA753974 [ gaCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGATTTTAGGCGAAGGCGGAGACGGT ]
[-] EMBL CB674712 [ ATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGATTTTAGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGCAAG CCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAGA ]
[-] EMBL CF291323 [ GGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGCAAGCCCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGGAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAAAA]
[+] EMBL BE230691 [ GAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAATGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGTAAG CCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCT ]
[-] EMBL CF309409 [ CGCCGACCTCATAGACAAGCTAGTCGCCGGCGGCGGCGGCAAG CCCCCTGCCGCCGCATGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTATGAAACCATCGCCATTTCTGTTTGATGAAGAACACACGTCAGTCTAGCTAGCTGGAGTAGCACATTTGTCATCAGACAGAAGTTGATTCTTTGCGCTTCTAGTGATCGATCGGTG GCATTTGCGTGTAATTTCGAACAATTTTGT ]
consensusID : consensus_15234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 858 fasta sequence
[CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG-TG-GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG-CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC-AAG--CCCCCCGCCGCCGCCTGA-ATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT-AGC-TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAGTAATGTCTGCCTGGCCAAATTATAATTTGGTTATTGTCT]
[+] EMBL CF334613 [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAAGAGTTCGGGATCACCGTGGAGGAAGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA ]
[+] EMBL CF298797 [ ATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA ]
[+] EMBL AK120212 [ TCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC AAG CCCCCCGCCGCCGCCTGA ATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT AGC TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAGTAATGTCTGCCTGGCCAAATTATAATTTGGTTATTGTCT]
[+] EMBL CF291322 [ AGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG GGNGNGAAGGTGATGCANATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCG ]
[+] EMBL CB647076 [ TTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTC ]
[-] EMBL CB647077 [ CCTCCTCCTCCTCTTCTTCCTTGT GTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTTTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC AAG CCCCCCGCCGCCGCCTGA ATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT AGC TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGAGGGTTTTTTGTTCGGTACAATTTT ]
[+] EMBL CB679333 [ CCTCCTTCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTC ]
[+] EMBL OSC111811 [ CTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGG GGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGGTTG GGGAAGGTGATGCAGATAGTNAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAG TGGCCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACATGGTGGAGATCGTTATGGCGCTTGAGGAGGAGTTCGGGATCACCGTTGAGGAGG ]
[+] EMBL OSS12593A [ GAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAA NTGGNCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTNATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCNGC GNGGCGGCAAAG CCCCCCGCCGCTGCCTGATNTCTAATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTNATGAAGAAGAGACGTCA TTTAGCTAAGCTTCGAG ]
[-] EMBL CF333666 [ GTGATGCAGATAGTGAACCACCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCA GACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC AAGCCCCCCCCGCCGCCGCCTGA ATACGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT AGC TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTGATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAaaaaa ]
consensusID : consensus_15234#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence
[TTTTTTAAAAGATGGTTTACCACTCTTACAATTCTTAGCACACTGTTGCACTACTCTTTGAAGGTTTCCTTGTGCTCTTTCCAGTGTATGACCAAAATTAAAAACCGGGAATTTCAATCCCTTCTTTAATAACATGTCCCATATGTGACCTATGGCGCCATGCATGTCCTACAGGTTTATCTTGTGCAATCTAGTTTCTATTGCCAAACTGCCAATGTCATCTTTACATAAGAATTATTCCAGAAGTGGGCTCATGTAGATGTAATTAACTCCAGCTCTGGTTAATCTGTCAGTGCAAACCTCTTTGTGACGTGCACCACTCTATCTGAAAACTTGCAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGGGGGGGGAAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA]
[+] EMBL CF309408 [TTTTTTAAAAGATGGTTTACCACTCTTACAATTCTTAGCACACTGTTGCACTACTCTTTGAAGGTTTCCTTGTGCTCTTTCCAGTGTATGACCAAAATTAAAAACCGGGAATTTCAATCCCTTCTTTAATAACATGTCCCATATGTGACCTATGGCGCCATGCATGTCCTACAGGTTTATCTTGTGCAATCTAGTTTCTATTGCCAAACTGCCAATGTCATCTTTACATAAGAATTATTCCAGAAGTGGGCTCATGTAGATGTAATTAACTCCAGCTCTGGTTAATCTGTCAGTGCAAACCTCTTTGTGACGTGCACCACTCTATCTGAAAACTTGCAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGGGGGGGGAAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA]
consensusID : consensus_15234#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence
[GGTGGGTAAGTAATCCAGTATAGTGAAGCCATCAGCCTGGCCGCTGGGTGGAGAGAGGCCGAANCTGGCGCCTCTGAGTTCGCCAGTTCACCGGAGACTGGGACCGGACCTCGCTGGACCACCGGTGGAGATTCGTGATTGGCAGCTAGGAAGGATGGAGTTTCCGGGATCACCGTGGAAGNGAAGGACAACGCCCATGAGCTATGCACCTACCATGCCTAGGACGCCCGCTCGACCTGCATGCGGACAATGCTGCGTGCGCCGGCGGCAGAGCGCGCAAGCCCCCCGCCGCCGCCTGAATGCTGATTCTTCTTGCTTGCTGTCTTGCTTGCTGTGGCTCTGGAAACCATGCGCCACTGTGCTGGTGTTGGATGGAAGAAGAGACGTGCAGTGCTAAGTCTAGCTCGAGTAGCACATTTGGTGCATGCAGAGAGAANTTTGATTCTGTTGCGCTTCTAGTGATCGATCGGTGTGTATTTGCGTGTAATTTCGAACATTTTGTCACTTACGTTGCTCGATTGATTGCTACTACTAAA]
[+] EMBL BQ907948 [GGTGGGTAAGTAATCCAGTATAGTGAAGCCATCAGCCTGGCCGCTGGGTGGAGAGAGGCCGAANCTGGCGCCTCTGAGTTCGCCAGTTCACCGGAGACTGGGACCGGACCTCGCTGGACCACCGGTGGAGATTCGTGATTGGCAGCTAGGAAGGATGGAGTTTCCGGGATCACCGTGGAAGNGAAGGACAACGCCCATGAGCTATGCACCTACCATGCCTAGGACGCCCGCTCGACCTGCATGCGGACAATGCTGCGTGCGCCGGCGGCAGAGCGCGCAAGCCCCCCGCCGCCGCCTGAATGCTGATTCTTCTTGCTTGCTGTCTTGCTTGCTGTGGCTCTGGAAACCATGCGCCACTGTGCTGGTGTTGGATGGAAGAAGAGACGTGCAGTGCTAAGTCTAGCTCGAGTAGCACATTTGGTGCATGCAGAGAGAANTTTGATTCTGTTGCGCTTCTAGTGATCGATCGGTGTGTATTTGCGTGTAATTTCGAACATTTTGTCACTTACGTTGCTCGATTGATTGCTACTACTAAA]
consensusID : consensus_15234#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence
[CGAGCTCGTSCAATTCGWGCASAGGTGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGMGGGGCGGCAAGCCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGAYCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTGAGGKTYGCTCGATTGATTGCTAAAAAAAA]
[+] EMBL BE229404 [CGAGCTCGTSCAATTCGWGCASAGGTGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGMGGGGCGGCAAGCCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGAYCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTGAGGKTYGCTCGATTGATTGCTAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15234#0 CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTT 60
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 ------------------------------------------------------------
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 CCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCG 120
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 ------------------------------------------------------------
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 CCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCC 180
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 ------------------------------------------------------------
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 ATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTC 240
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 ------------------------------------------------------------
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 AGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATT 300
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 ------------------------------------------------------------
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 CTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAAT 360
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 --------------------------------------------------------CATT 4
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 GTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGC 420
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 TCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGC 64
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 AATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTT 480
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 CTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGG 124
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 TGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACT 540
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 CGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGA 184
consensus_15234#2 ------------------------------------TTTTTTAAAAGATGGTTTACCACT 24
consensus_15234#0 ATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGA 600
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 AGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTC- 243
consensus_15234#2 CTTACAATTCTTAGCACACTGTTGCACTACTCTTTGAAGGTTTCCTTGTGCTCTTTCCAG 84
consensus_15234#0 TTTTAGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCG 660
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 --------GGTGGGTAAGTAATCCAGTATAGTGAAGCCATCAGCCTGGCCGCTGGGTGGA 52
consensus_15234#1 TGCGCGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCG 303
consensus_15234#2 TGTATGACCAAAATTAA--AAACCGGGAATTTCAATCCCTTCTTTAATAACATGTCCCAT 142
consensus_15234#0 CTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGAC-TC 719
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 GAGAGGCCGAANCTGGCGCCTCTGAGTTCGCCAGTTCACCGGAGACTGGGACCGGACCTC 112
consensus_15234#1 CTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGAC-TC 362
consensus_15234#2 ATGTGACCTATGGCGCCATGCATGTCCTACAGGTTTATCTTG----TGCAATCTAGTTTC 198
consensus_15234#0 GCTGGACA--CGGTGGAGAT-CGTGAT----GGCGCTGGAGGAG-GAGTT--CGGGATCA 769
consensus_15234#4 --------------CGAGCT-CGTSCA----ATTCGWGCASAGGTGAGTT--CGGGATCA 39
consensus_15234#3 GCTGGACCACCGGTGGAGATTCGTGATTGGCAGCTAGGAAGGATGGAGTTTCCGGGATCA 172
consensus_15234#1 GCTGGACA--CGGTGGAGAT-CGTGAT----GGCGCTGGAGGAG-GAGTT--CGGGATCA 412
consensus_15234#2 TATTGCCAAACTGCCAATGT-CATCTTT---ACATAAGAATTATTCCAGAAGTGGGCTCA 254
* * * * * * *** ***
consensus_15234#0 CCGTGGAGGAG---GACAACGCCCA-GAGC-AT-CACC-ACCAT--CCAGGACGCCG--C 818
consensus_15234#4 CCGTGGAGGAG---GACAACGCCCA-GAGC-AT-CACC-ACCAT--CCAGGACGCCG--C 88
consensus_15234#3 CCGTGGAAGNGAAGGACAACGCCCATGAGCTATGCACCTACCATGCCTAGGACGCCCGCT 232
consensus_15234#1 CCGTGGAGGAG---GACAACGCCCA-GAGC-AT-CACC-ACCAT--CCAGGACGCCG--C 461
consensus_15234#2 T-GTAGATGTAATTAACTCCAGCTCTGGTTAATCTGTCAGTGCAAACCTCTTTGTGACGT 313
** ** * ** * * * ** * * *
consensus_15234#0 CGACCT---CATCGACAA-GCT-CGT-CGCCGGCGGCGGCG---GCAAGCCCCCCGCCGC 869
consensus_15234#4 CGACCT---CATCGACAA-GCT-CGT-CGCCGGMGG-GGCG---GCAAGCCCCCCGCCGC 138
consensus_15234#3 CGACCTGCATGCGGACAATGCTGCGTGCGCCGGCGGCAGAGCGCGCAAGCCCCCCGCCGC 292
consensus_15234#1 CGACCT---CATCGACAA-GCT-CGT-CGCCGGCGGCGGCG---GCAAGCCCCCCGCCGC 512
consensus_15234#2 GCACCACTCTATCTGAAA-ACT-TGCAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTC 371
*** ** ** * * * * *** ** * * *
consensus_15234#0 CGCCTGAAT-CTGAT-CTTCTT-CTTCTTCTTCTTCTTGCTCTG-------AAACCAT-C 918
consensus_15234#4 CGCCTGAAT-CTGAT-CTTCTT-CTTCTTCTTCTTCTTGCTCTG-------AAACCAT-C 187
consensus_15234#3 CGCCTGAATGCTGATTCTTCTTGCTTGCTGTCTTGCTTGCTGTGGCTCTGGAAACCATGC 352
consensus_15234#1 CGCCTGAAT-CTGAT-CTTCTT-CTTCTTCTTCTTCTTGCTCTG-------AAACCAT-C 561
consensus_15234#2 CATGAAGACGATGAC--AGCGAGGAGAGGCCTCGTCTCCCTCAG--------ATCCCCTC 421
* * *** * ** ** * * ** *
consensus_15234#0 GCCACTTC------TGTTTGATG-AAGAAGAGACGT-CAGT-CTAG-----CTAGCTCGA 964
consensus_15234#4 GCCACTTC------TGTTTGATG-AAGAAGAGACGT-CAGT-CTAG-----CTAGCTCGA 233
consensus_15234#3 GCCACTGTG-CTGGTGTTGGATGGAAGAAGAGACGTGCAGTGCTAAGT---CTAGCTCGA 408
consensus_15234#1 GCCACTTC------TGTTTGATG-AAGAAGAGACGT-CAGT-CTAG-----CTAGCTCGA 607
consensus_15234#2 GCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGGGGGGGGAAAGGTGATGCAGATAGT 481
** * ** * * * * ****** * * ** * *
consensus_15234#0 GTAGCA-CATTTGTCAT---CAGAGAGAAGTT-GATT--CT-TTGCGCTTCTAGTCATCG 1016
consensus_15234#4 GTAGCA-CATTTGTCAT---CAGAGAGAAGTT-GATT--CT-TTGCGCTTCTAGTCATCG 285
consensus_15234#3 GTAGCA-CATTTGGTGCATGCAGAGAGAANTTTGATT--CTGTTGCGCTTCTAGTGATCG 465
consensus_15234#1 GTAGCA-CATTTGTCAT---CAGAGAGAAGTT-GATT--CT-TTGCGCTTCTAGTCATCG 659
consensus_15234#2 GAAGCAGCAGCTGGCGC-TGGGGGAGGAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGG 540
* **** ** ** * ** * * ** * * * * *
consensus_15234#0 ATC--GGTGTGTATTTGCGTGTAATTTCGAACAATTT--TGTCACTTA---GGTTGCTCG 1069
consensus_15234#4 AYC--GGTGTGTATTTGCGTGTAATTTCGAACAATTT--TGTCACTTGAG-GKTYGCTCG 340
consensus_15234#3 ATC--GGTGTGTATTTGCGTGTAATTTCGAACA-TTT--TGTCACTTA---CGTTGCTCG 517
consensus_15234#1 ATC--GGTGTGTATTTGCGTGTAATTTCGAACAATTT--TGTCACTTA---GGTTGCTCG 712
consensus_15234#2 AGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCG 600
* * ** * * * * ** * * * * * * ** * ** * ***
consensus_15234#0 ATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGT 1129
consensus_15234#4 ATTGATTGCTAAAAAAAA------------------------------------------ 358
consensus_15234#3 ATTGATTGCTACTACTAAA----------------------------------------- 536
consensus_15234#1 ATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGT 772
consensus_15234#2 G--GATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA 658
*** *
consensus_15234#0 TCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAGAA----------- 1178
consensus_15234#4 ------------------------------------------------------------
consensus_15234#3 ------------------------------------------------------------
consensus_15234#1 TCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAGTAATGTCTGCCTG 832
consensus_15234#2 ------------------------------------------------------------
consensus_15234#0 --------------------------
consensus_15234#4 --------------------------
consensus_15234#3 --------------------------
consensus_15234#1 GCCAAATTATAATTTGGTTATTGTCT 858
consensus_15234#2 --------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||