These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1466 fasta sequence [TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGNCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTTCTTCGCCGGAGAAGCCCGT-CACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGTCGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTGCGCGTGATTAATTAATTAATTAACTGATGTCAATTACTAATCAAATTAGACAAAACTGGATGCTGCAATCTGCAAAGAAAATTACTACTCTCTCGCTGAGCAATTTGTGTTCGAAGATTATTAGTATTTGCTATGAAATTCTTGCGTTCTATACAGGATTGTAATTTCTATAAAATTTCCAGGAATTCACTAATTAGTTTAAGTGACATCTAATATGTGGATGTCTATATGTGGCGGCGCTTTTTATTTGCATATGTTCATGAGCCTAATGGCCC] [-] EMBL AU184171 [TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGA ] [-] EMBL AU184431 [TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTNCACCTTCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCT ] [-] EMBL OSR05021A [ GCATTTGAAGCCTCTTGCAGCAACAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGA ] [-] EMBL OSR00751A [ GCATTTGAAGCCTCTTGCAGCAACAATGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGANAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGA ] [+] EMBL CB648693 [ ATGACCAATGCATCACATTTATCTTATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCATCATCCCC ] [-] EMBL AU101621 [ tttttTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGNCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTTCTTCGCCGGAGAAGCCCGT CACCACCCAC ] [+] EMBL AK109884 [ ACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGA ATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGCCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGC TCCTCGCCGGAGAAG CCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGTCGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTGCGCGTGATTAATTAATTAATTAACTGATGTCAATTACTAATCAAATTAGACAAAACTGGATGCTGCAATCTGCAAAGAAAATTACTACTCTCTCGCTGAGCAATTTGTGTTCGAAGATTATTAGTATTTGCTATGAAATTCTTGCGTTCTATACAGGATTGTAATTTCTATAAAATTTCCAGGAATTCACTAATTAGTTTAAGTGACATCTAATATGTGGATGTCTATATGTGGCGGCGCTTTTTATTTGCATATGTTCATGAGCCTAATGGCCC] consensusID : consensus_15263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1259 fasta sequence [TTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGTCGAACACCACCACGTGCTTCCCGATCCCCGNGGCACAGAACACGCTGCGCGGGGACGGCTTGTCG-CCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC-AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT-AGACGGTGGCGCCGACGGACGCCATGGTG-ACGCCGACGCGCGGCGGCGGCACG-T-C-CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC-GGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAGAACTTGCCTTTCTCCACCAATCTGGCCAGAGGCCAAGTGATATACAA] [-] EMBL AU184587 [TTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTT ] [-] EMBL AU095429 [ TTTTTNACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGTCGAACACCACCACGTGCTTCCCGATCCCCGNGGCACAGAACACGCTGCGCGGGGACGGCTTGTCGCCCGNCGCCGCCGTCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCANTGCACGTTGTTCAGCTCCTCGCCGGAGAA CCGTACA ] [-] EMBL AK072805 [ TGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTGGTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGCCTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGCCGAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTTGTCG CCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG T CGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAGAACTTGCCTTTCTCCACCAATCTGGCCAGAGGCCAAGTGATATACAA] [-] EMBL CA766941 [ AATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCG ] [-] EMBL CB648665 [ GGACGGCTTGTCG CCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTCGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCACACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGTCGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGTGGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG T CGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTGTGCAGCC ] [-] EMBL OSR05841A [ GGCTTGTCG CCGCCGCCGCCGCCNCCGGTGGTNTCGACCGTGGACCANGCGCCCGTGCCCGGGTNGTAGCAGTGCACGTCGTCCAGCTCCTCGCCGGAGAAGCCGTACACCACCCANACCTTCCCGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCAGCGCCTCCCACCGCCCGGCG ] [-] EMBL OSR3054A [ CATCTGTTGGTCGCCGTGTCAAACNAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCNACGGACGCCATGGTGAACACCNACNCGCGGCGGCGGCACGTT C NCGGAGNCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GNTACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTG ] [-] EMBL OSR27901A [ ATCTGTTGGTCGCCGTGTCAAACGAGTAGAGCTCGTTC AGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ANGCCGACGCGCGGCGGCGGCACG T C CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACCGGGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCNCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGG ] [-] EMBL OSS2858A [ AGAGCTCGTTCAAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGT AGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG TCC CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAG ] [-] EMBL OSS2857A [ TTCAAGCTCCTTGTGCTCCTGGTCGCGACCGCCGAACATGTAAGACGGTGGCGCCGACGGACGCCATGGTG ACGCCGACGCGCGGCGGCGGCACG T C CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGTTGTCCACC GGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGCAGCCTGAG ] [-] EMBL OSR22961A [ ACG T C CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTNGAANGCGTACATGGCGTTGTCCACC GGCANGCGCGGCGTGAACTCGCCGCCGAAAGCGTACGCCGTGCCGCCGACGAGGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGC ] [-] EMBL OSR14652A [ CGTCCAGCGCCGACCAGCACTGCNACTTGAGGTNGAANGCGTACATGGCGTTGTCCACCNGGNACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCNCCGACGAGGGTGATAGNGTGGGAGCNTCTTGCTCCCGGCCCATCTCCCNTCTGCTCTAGCTTCACCCAGGTGCCAGCAGCCATTGGCATGAACAGATTGGAGCTCTGCTTCCTCTGC ] consensusID : consensus_15263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence [TTTTTTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAAAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAAAAGTAAATGTCGCCAAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCTTGTCTCGTCCTCTGGCCACCTAGAGCCACAAAAGCAGGATGCCCAGCACTCCAGGCAGACGTGTCAATGTGACAGACGGCGACACCGCTGTTGATCTTCCCCT] [+] EMBL CA759886 [TTTTTTTTTTTTTGACCAATGCATCACATTTATTTCATCAGCTACACAACACAGGATAACATGATACCAACACCAACATCAAACACAGTGACAAACCACACAACTACCCAACGCTCAAAAGGGAAGCACGCGGACACCTGCATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGTGAAAAAGTAAATGTCGCCAAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAGCCCTCGCCGGCCGTCCACCTCCCCCTTGTCTCGTCCTCTGGCCACCTAGAGCCACAAAAGCAGGATGCCCAGCACTCCAGGCAGACGTGTCAATGTGACAGACGGCGACACCGCTGTTGATCTTCCCCT] consensusID : consensus_15263#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 129 fasta sequence [TGGTTTTTCTCTGTGTTTGATGTTGGTGTTGGTATCATGTTNTCCTGTGTTGTGTAGCTGATGAAATAAATGTGATGCATTGGTCATTGGTGCTTNAANATAAAATNAATGGAGNANAAAAAANAANAN] [+] EMBL AU097214 [TGGTTTTTCTCTGTGTTTGATGTTGGTGTTGGTATCATGTTNTCCTGTGTTGTGTAGCTGATGAAATAAATGTGATGCATTGGTCATTGGTGCTTNAANATAAAATNAATGGAGNANAAAAAANAANAN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15263#0 TTTTTTTTTGTTTGGAAAACAGGCATTTGAAGCCTCTTGCAGCACCAATGACCAATGCAT 60 consensus_15263#1 ----------------------------------------TTTTTTTTTGACCAATGCAT 20 consensus_15263#2 ------------------------------------TTTTTTTTTTTTTGACCAATGCAT 24 consensus_15263#3 -----------------------------------TGGTTTTTCTCTGTGTTTGATGT-T 24 ** *** * consensus_15263#0 CACATTTATTTCATCAGCTACACAACACAGGATAAC--ATGATACCAACACCA-ACATCA 117 consensus_15263#1 CACATTTATTTCATCAGCTACACAACACAGGATAAC--ATGATACCAACACCA-ACATCA 77 consensus_15263#2 CACATTTATTTCATCAGCTACACAACACAGGATAAC--ATGATACCAACACCA-ACATCA 81 consensus_15263#3 GGTGTTGGTATCAT--GTTNTCCTGTGTTGTGTAGCTGATGAAATAAATGTGATGCATTG 82 ** * **** * * * * ** * **** * ** * *** consensus_15263#0 AACAC-AGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTG 176 consensus_15263#1 AACAC-AGTGACAAACCACACAACTACCCAACGCTCAGAAGGGAAGCACGCGGACACCTG 136 consensus_15263#2 AACAC-AGTGACAAACCACACAACTACCCAACGCTCAAAAGGGAAGCACGCGGACACCTG 140 consensus_15263#3 GTCATTGGTGCTTNAANATAAAATNAATGGAGNANAAAAAANAANAN------------- 129 ** *** * * * ** * * * ** * consensus_15263#0 CATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGT 236 consensus_15263#1 CATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGT 196 consensus_15263#2 CATGACGGAGGTCGACAAGGTCGCTCGCCGGTTCAGGAATTATTAAGCCAGCGGCGGAGT 200 consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAG 296 consensus_15263#1 GAAGAAGTAGATGTCGCCGAGGCGATCGTTCGTCGGCGAGTTGCCGCCGTACACCAGCAG 256 consensus_15263#2 GAAAAAGTAAATGTCGCCAAGGCGATCGTTCGTTGGCGAGTTGCCGCCGTACACCAGCAG 260 consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 CCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTG 356 consensus_15263#1 CCCTCGCCGGCCGTCCACCTCCCCCGCCGAGAACGCGCACCATCCCCTCGGCCCCGGGTG 316 consensus_15263#2 CCCTCGCCGGCCGTCCACCTCCCCCT---------TGTCTCGTCCTCTGGCCACCTAGAG 311 consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGC 416 consensus_15263#1 GTGCTCGCCCGCGTCGTCCAGCCTCGCCCACGCGCCCGTCTCCGTGTCCAGCGCGAACGC 376 consensus_15263#2 CCACAAAAGCAGGATGCCCAGCACTCCAGGCAGACGTGTCAATGTGACAGACGGCGACAC 371 consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 CTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGNC 476 consensus_15263#1 CTCGGCGGAGAATTTGCCGGCGCCGAGGTGCCCCAGGTCGCTCGGGTCCACCTCGCCGTC 436 consensus_15263#2 CGCTGTTGATCTTCCCCT------------------------------------------ 389 consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GAACACCACCACGTGCTTCCCGATCCCCGCGGCACAGAACACGCTGCGCGGGGACGGCTT 536 consensus_15263#1 GAACACCACCACGTGCTTCCCGATCCCCGNGGCACAGAACACGCTGCGCGGGGACGGCTT 496 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTC 596 consensus_15263#1 GTCGCCGCCGCCGCCGCCGCCGGTGGTCTCGACCGTGGACCACGCGCCCGTGCCCGGGTC 556 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GTAGCAGTGCACGTCGTCCAGCTTCTTCGCCGGAGAAGCCCGTCACCACCCACACCTTCC 656 consensus_15263#1 GTAGCAGTGCACGTCGTCCAGCT-CCTCGCCGGAGAAGCCGTACACCACCCACACCTTCC 615 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 CGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCA 716 consensus_15263#1 CGCCGGCGACGGCCAGCCCGGGGCCTCCCCGCGGCTTGCACGCCTCGCCCGGCGACGGCA 675 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGT 776 consensus_15263#1 GCGCCTCCCACCGCCCGGCGGCGACGTCGTAGGCCCACAGGTCGTTGAGGCGGCCGGCGT 735 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 CGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGT 836 consensus_15263#1 CGCCGCACCCGCCGAACACGTACACCTTCCCGCCCCCCGCGGCGTCGGCCACCATGGAGT 795 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGG 896 consensus_15263#1 GGTAGCTCCGGTGCGGCGGGCCGTCGCCGGCGCCGGAGGACAGCAGCGTCCATCTGTTGG 855 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 TCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGA 956 consensus_15263#1 TCGCCGTGTCAAACGAGTAGAGCTCGTTCAGCTCCTTGTGCTCCTGGTCGCGACCGCCGA 915 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 ACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGT 1016 consensus_15263#1 ACATGTAGACGGTGGCGCCGACGGACGCCATGGTGACGCCGACGCGCGGCGGCGGCACGT 975 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 CGCCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGT 1076 consensus_15263#1 C-CCGGAGGCGTCCAGCGCCGACCAGCACTGCGACTTGAGGTCGAAGGCGTACATGGCGT 1034 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 TGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAACGCGTACGCCGTGCCGCCGACGA 1136 consensus_15263#1 TGTCCACCGGCACGCGCGGCGTGAACTCGCCGCCGAANGCGTACGCCGTGCCGCCGACGA 1094 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTGCGCGT 1196 consensus_15263#1 GGGTGATGGCGTGGGAGCTTCTTGCTCCCGGCCCATCTCCCTTCTGCTCTAGCTTCACCC 1154 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 GATTAATTAATTAATTAACTGATGTCAATTACTAATCAAATTAGACAAAACTGGATGCTG 1256 consensus_15263#1 AGGTG------CCAGCAGCCATTGGCA-----TGAACAGATTGGAGCTCTGCTTCCTCTG 1203 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 CAATCTGCAAAGAAAATTACTACTCTCTCGCTGAGCAATTTGTGTTCGAAGATTATTAGT 1316 consensus_15263#1 CAGCCTG----AGAACTTGCCTTTCTCC-----ACCAATCTG-GCCAGAGGCCAAGTGAT 1253 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 ATTTGCTATGAAATTCTTGCGTTCTATACAGGATTGTAATTTCTATAAAATTTCCAGGAA 1376 consensus_15263#1 ATACAA------------------------------------------------------ 1259 consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 TTCACTAATTAGTTTAAGTGACATCTAATATGTGGATGTCTATATGTGGCGGCGCTTTTT 1436 consensus_15263#1 ------------------------------------------------------------ consensus_15263#2 ------------------------------------------------------------ consensus_15263#3 ------------------------------------------------------------ consensus_15263#0 ATTTGCATATGTTCATGAGCCTAATGGCCC 1466 consensus_15263#1 ------------------------------ consensus_15263#2 ------------------------------ consensus_15263#3 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||