These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1532 fasta sequence [AGTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC-TGCGGCGTCGAGGCCGCC-TAC-ATCGTCC-TCTA-CCTCGTCTACGCGCC-GCGCCG-CGCCA--GGC-TCCGCA-CCCTC-GCC-TTC-TTCCT-CCTCC-TCGA--CGTC-GCC-GCC-TTC-GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT-CCGACTCCATGT-CCCCGATTTCCG-CCGCCG-CCGCCGCCACGCAGAGGGTGATCGAGCT-CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA-TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC-CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT-CGATGACGGACAGAATTTAG-CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG-TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAAAAAAAAAAAAAGAAAAAAAAAAAAAGGAA] [+] EMBL AK070510 [AGTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGTCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATCTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATT ] [+] EMBL AK106127 [ GTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATCTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGAT ] [+] EMBL CB645462 [ AACCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGG ] [+] EMBL AU063762 [ GCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCC ] [+] EMBL OSS12378A [ GCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGGCTTCGGC TGCGGCGTC ] [+] EMBL CB657176 [ TCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACT ] [+] EMBL BQ164722 [ TAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA AGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC CCC G C TTC GCCCTCATCGTCGTCA CACCCTCTACCTCGTCCCC AG CCCACCAG ] [+] EMBL CB667487 [ AGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTG ] [+] EMBL CB667446 [ AGCTCCCTTCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGT ] [+] EMBL AU076107 [ GGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGCTTGCGGCGTCGAAGCCGCCTTACAATCGTCCTTCTACCCTCGTCTACGCGCCGGCGCCGNGGCCAAGGGCTTCCGCANCCTTCGGCCTTTCTTTCCTCCCTCCTTCGAANGGTCGGCCGGCCTTTCGGCCCTncaa ] [+] EMBL AU094691 [ GGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCT ] [-] EMBL CB667488 [ CGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATTTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAGTGGAAGATTGTGACAGGTATTATTAGTAAAAAAAAAAAAAGA ] [-] EMBL CB667447 [ GGGGCTCTACTTTTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATTTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGGGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATT TTCGTAAAAAACAAAAggt ] [+] EMBL AU096188 [ ACGT CCGNCTCCATGT CCCCGATTTCCGCCCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGNACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGCTCGAACGCGTCGCCGCCGCCGCCGCCNCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTANGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAGTTAAAAA ] [+] EMBL AU082669 [ CGTCCCGACTCCATGTCCCCCGATNTCCGCCCTCCGCCCGCCGCCACGCAGAGGTTGATCGAGCTCCCCCGCC GCACGCACGCCTTCACCATCCTNTCC TGAGCCCCTCCCCGANTCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGAC GCGTCGCCGCCGCCGCCGCCCCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAG ATTTAGCCAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTA A AAAAAAAAAAAAAAAANAAAA ] [-] EMBL CB657177 [ ATTTCCG CTGCCG CCGCCGCCACGCAGAGGGTGATGGAGTT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCGGTGAGCCCCATCCCGA TCCTCGGGGTGCACAAGGTGGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGGGTTGCCCCCCCCGCCGCCGCCGACAAGGAGGTGTTGCAGAACAAGCCGGAGGTGATGGAGATCCCCGCCCCCGTGTGACGACGACTGATTTTGAGGAGGACAGATTTTCGTTATTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGACCTTTAATTAGTTGGTTAATTATTGGATTCCAATG GGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAAATAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGTTGGTTGGTGTAATAAGAAAAAGGCGATTTACTAGTAGTTTACTAGTTAGTACGCATGCAGGTGGGTGGGCTTTACTTACCGTGTGGCAATTTCATTTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGCCAGGTATTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAA] [+] EMBL AU076108 [ TGCTGCAGAACAANCCGGAGGTGATCGAGATCACCGCCNCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGNCCGGATCCGATGACGGACAGAATTTAG CAGTGTGGATTACTNCCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAGTTAAAAAAAAA ] [+] EMBL C99575 [ ttgGGATTACAATGNTGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAGTTAAAAAAAAA ] consensusID : consensus_15265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 552 fasta sequence [TCCGTGACCCCATCCCCGATCCTCGGCGTGCACAAGGTCGAGGTGTGCCCCGAGCAGCGCCGACGGCGTCCCCCCCCCCCCCGACAAGGAGCTGCTCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTT-AATTAGTTGGTTAA-TTATTGGATTACAAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC-TTA-CTTAAATTAATTATCTT-GTTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGA-TTGTGACAGGTATTATTAGTA---AAAAAAAAAA] [+] EMBL BI800838 [TCCGTGACCCCATCCCCGATCCTCGGCGTGCACAAGGTCGAGGTGTGCCCCGAGCAGCGCCGACGGCGTCCCCCCCCCCCCCGACAAGGAGCTGCTCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTT AATTAGTTGGTTAA TTATTGGATTACAAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC TTA CTTAAATTAATTATCTT GTTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGA TTGTGACAGGTATTATTAGTA AAAAAAA ] [+] EMBL BI798706 [ gggctTGCTCAGAACAAGCCGGAGGTGATCGAGATCACCGCC CCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGAT GCCGGATCGATGACGGACAGAATTTA CAGTGTGGATTACTACCGAACTTTAAATTATTTGGTTAATTTATTGGATTAC AATGTGGTAAGAGTGTGTCATTA CAGCTAGTTAACTTTACCTTAAATTAATTATCTTGGTTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGACTTGTGACAGGTATTATTAGTAGTTAAAAAAAAAA] consensusID : consensus_15265#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence [CGAACTTTAATTAGTTGGTTAATTATTGGATTACAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAACTAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGGTTCGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCACATGGAAGATTNCCCNCCACGGTATTA] [+] EMBL BI806113 [CGAACTTTAATTAGTTGGTTAATTATTGGATTACAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAACTAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGGTTCGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCACATGGAAGATTNCCCNCCACGGTATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15265#0 AGTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGA 60 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 AGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGA 120 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 TTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTT 180 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCT 240 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGG 300 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGC 360 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGCTGCGGCGTCGA 420 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GGCCGCCTACATCGTCCTCTACCTCGTCTACGCGCCGCGCCGCGCCAGGCTCCGCACCCT 480 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CGCCTTCTTCCTCCTCCTCGACGTCGCCGCCTTCGCCCTCATCGTCGTCACCACCCTCTA 540 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCAT 600 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGA 660 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTA 720 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAG 780 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCC 840 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 GACGACGTCCGACTCCATGTCCCCGATTTCCGCCGCCGCCGCCGCCACGCAGAGGGTGAT 900 consensus_15265#1 ------------------------------------------------------------ consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CGAGCTCCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGATCCT 960 consensus_15265#1 -------------------------------------TCCGTGACCCCATCCCCGATCCT 23 consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGCCGACGGCGTCGCCGCCGC 1020 consensus_15265#1 CGGCGTGCACAAGGTCGAGGTG-TGCCC--CGAGCAG--CGCCGACGGCGTCCCCCCCCC 78 consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGC 1080 consensus_15265#1 CCC------CGACAAGGAGCTGCT-CAGAACAAGCCGGAGGTGATCGAGATCACCGCCGC 131 consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 CGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACG 1140 consensus_15265#1 CGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACG 191 consensus_15265#2 ------------------------------------------------------------ consensus_15265#0 ACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTTAAT 1200 consensus_15265#1 ACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTTAAT 251 consensus_15265#2 -------------------------------------------------CGAACTTTAAT 11 *********** consensus_15265#0 TAGTTGGTTAATTATTGGATTACAA-TGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC 1259 consensus_15265#1 TAGTTGGTTAATTATTGGATTACAAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC 311 consensus_15265#2 TAGTTGGTTAATTATTGGATTACAA-TGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC 70 ************************* ********************************** consensus_15265#0 TTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGA 1319 consensus_15265#1 TTACTTAAATTAATTATCTTGTTCAGTCAGTCA------------GTCAGTCAGCTTTGA 359 consensus_15265#2 TTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGA 130 ********************************* *************** consensus_15265#0 GTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAA-TAAGAAAAAGGCGAT 1378 consensus_15265#1 GTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAA-TAAGAAAAAGGCGAT 418 consensus_15265#2 GTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAACTAAGAAAAAGGCGAT 190 ******************************************** *************** consensus_15265#0 CTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTG--TT 1436 consensus_15265#1 CTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTG--TT 476 consensus_15265#2 CTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGGTTC 250 ******************************************************** * consensus_15265#0 GCAATCTCATCTCTTTGTACTTACAACTCAGAAATCA-ATGGAAGATTGTGACAGGTATT 1495 consensus_15265#1 GCAATCTCATCTCTTTGTACTTACAACTCAGAAATCA-ATGGAAGATTGTGACAGGTATT 535 consensus_15265#2 GCAATCTCATCTCTTTGTACTTACAACTCAGAAATCACATGGAAGATTNCCCNCCACGGT 310 ************************************* ********** * consensus_15265#0 ATTAGTAAAAAAAAAAAAAGAAAAAAAAAAAAAGGAA 1532 consensus_15265#1 ATTAGTAAAAAAAAAAA-------------------- 552 consensus_15265#2 ATTA--------------------------------- 314 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||