These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15273#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1015 fasta sequence [GCACGCACCCGAGCCCCACTGCAATCCCACCTCCCCAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT-AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG-TTCTGCGTCTCCTCCTTCGTGGTCAGC-TTCTACGTGCCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCAGAGGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATATACCTTTTCAGCTCTGTTTCGAAGAAAAA] [+] EMBL AK071702 [GCACGCACCCGAGCCCCACTGCAATCCCACCTCCCCAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG TTCTGCGTCTCCTCCTTCGTGGTCAGC TTCTACGTGCCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCAGAGGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTC ] [+] EMBL AK068329 [ GCACCCGAGCCCCACTGCAATCCCACCTCCCCAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG TTCTGCGTCTCCTCCTTCGTGGTCAGC TTCTACGTGCCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCAGAGGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATATACC ] [+] EMBL AK104322 [ CACCCGAGCCCCACTGCAATCCCACCTCCCCAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG TTCTGCGTCTCCTCCTTCGTGGTCAGC TTCTACGTGCCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCAGAGGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTT ] [+] EMBL AU088638 [ ACTGCAATCCCACCTCCCCAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTG CGACGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACNGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCAGGTng ] [+] EMBL OSR10192B [ TGCAATCCCACCTCCCCAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCNGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGNCGTCACNCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCC ] [+] EMBL OSR10471A [ TGCAATCCCACCTCCCCAACTCCGNCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGACGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGTCACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGn ] [+] EMBL CB645764 [ AATCC CCTTAAAAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACAATCGAGATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG TTCTGCGTCTCCTCCTTCGTGGTCAGC TTCTACGTGCCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCAGAGGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATC ] [+] EMBL AU088585 [ CCCACCTCCCCAACTCCGCCGCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCG CACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG TTC ] [+] EMBL AA751968 [ CCCCAACTCCNCCGCACGCA CCCCGCNCCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGANGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCCGTTGTTCAACTACATCCAGGGGAAGAACNCNTTCNACGAGACGATCGANATGACGGCGCCGGTGCTGACGCANGTGGCGCCGAACGACGGGCCG TTCTGCGTCTCCTCCTTCGTGGTCAGC TTCTACGTGCCGGCGAA AAACAGCCGGA CCGCCGCCGGCGGAAGGGCTGCACGTNCAAAAGTGGGCCGGGGGCAAGTAC CCGCTGTGCGCCGCTTCNGGGGnt ] [+] EMBL CB683793 [ GCACGCATCCCCGCACCCGCCACCATGGCTCGCCGGAGCGGCCT AATGCTCCCACTCCTCGCCGCCGCCGCTGTCACCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGAGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCAGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG TTCTGCGTCTCCTCCTTCGTGGTCAGC TTCTACCTGCCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCAGAGGTGGGCCGGGGCCAAGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAAGTGGGCCGCCGCCGTGTC ] [+] EMBL AA752938 [ cgtgCCGGCCA CATGGCTCGCCGGAGCGGCCTNAATGCTACTACTCCTCGCCGCCGCCGCTGTCGCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTGGACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCCCCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCCGTTGTTCAACTACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCNNCGGTGCTGACGCAGGTGGCGCCGAGCGACGGGCCG TTCTGCGTCTCCTCCTTCGTGGTCAGC TTCTACGTGCCGGCGAANAACCAGCCGGACCTGCCGCCGGCGGAGGGGCTGCACGTGCANAAGTGGGCCGGGGCCAGGTACNCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGANCA GCCGCGCTGCTCGACGCCANCCTG ] [+] EMBL AU088586 [ CGGGCCGTTTTTGCGTCTCCTCCTTCGTGGTCAGCTTTTTACGTGCCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGAAGGGGCTGCACGTGCAAAGGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCNCTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACANCAATAAAAGTTCTGTTTAGTCAACTATTTNAAaaaa ] [+] EMBL AU184090 [ CCGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATATACCTTTTCAGCTCTGTTTCGAAGAAAAA] [+] EMBL AU184094 [ CGCCGTGTCCGACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATATACCTTTTCAGCTCTGTTTCGAAGAAAAA] [+] EMBL BE228264 [ caggattcCGCACT AGCTCGCCGTTCGAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGC ] consensusID : consensus_15273#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 647 fasta sequence [TCGTGGTCAGCTTCTACTGCCGGCGAANAACCAGCCGGATCCGCCGCCGGCGGAAGGGGCTGCACTTCAGAGGTGGGCCGGGGCCAGGTACGCCGCTGTTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGANCAGGNCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCNACGTCGTCGTACACGGTGGCCCAGTACAACTCGCCGTTCGAGTTCAGCGGTCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU029648 [TCGTGGTCAGCTTCTACTGCCGGCGAANAACCAGCCGGATCCGCCGCCGGCGGAAGGGGCTGCACTTCAGAGGTGGGCCGGGGCCAGGTACGCCGCTGTTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGANCAGGNCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCNACGTCGTCGTACACGGTGGCCCAGTACAACTCGCCGTTCGAGTTCAGCGGTCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGACATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATAAAAAAAAAAAAAA ] [+] EMBL AF522018 [ CCAAATCTTCAAATGTTCACCGGAGTAGTAGACTCGATCACGCAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAA ] [+] EMBL CF297928 [ ATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAATNTTTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI796240 [ AAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCATGATTTAACGGGGAACATCAATATATATACCTTTTCAGCTCAAAAAAAAAAA ] consensusID : consensus_15273#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [GCGGATATCAGCGAATGTGTTTANTNTCCNGGGGAANAACGCGTACAACGAGACGATCGANATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGANCGACGGGCCGTTCTGCGTCTCCTCCTTCGTGGTCAGCTTCTACGTGCCGGCGAANAACAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCANANGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGANCANGCCGCGCTGCTCGACGCCAGCCTGCAGGGGANCANGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCNACGTCCTCNTACACGGTGGCGCANTACAACTCNCCNTTCGANTTCANCGGCAGGGTCNACNAAATATGGATGCTCTTCCACNCNAAAGATGCATCCNACATGTTACGCNATTAACGCGCGGCAATTCCCAATCTTCNAATGTTCNCCGGANTNATANACTCCATCGCNCANCTTGTGTTATCTTCNANCTC] [+] EMBL AA751914 [GCGGATATCAGCGAATGTGTTTANTNTCCNGGGGAANAACGCGTACAACGAGACGATCGANATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGANCGACGGGCCGTTCTGCGTCTCCTCCTTCGTGGTCAGCTTCTACGTGCCGGCGAANAACAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCANANGTGGGCCGGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGANCANGCCGCGCTGCTCGACGCCAGCCTGCAGGGGANCANGTGGGCCGCCGCCGTGTCCGACGGGCGCAGGGCCGACCCNACGTCCTCNTACACGGTGGCGCANTACAACTCNCCNTTCGANTTCANCGGCAGGGTCNACNAAATATGGATGCTCTTCCACNCNAAAGATGCATCCNACATGTTACGCNATTAACGCGCGGCAATTCCCAATCTTCNAATGTTCNCCGGANTNATANACTCCATCGCNCANCTTGTGTTATCTTCNANCTC] consensusID : consensus_15273#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 222 fasta sequence [TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF316920 [TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAAGCCCTAAACTGCTCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAGTTGTGACTCGTGCGTATCGAGATTAACAACAATAAAAGTTCTGTTTAGTCAACTATTTTAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15273#1 ------------------------------------------------------------ consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 GCACGCACCCGAGCCCCACTGCAATCCCACCTCCCCAACTCCGCCGCACGCATCCCCGCA 60 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 ------------------------------------------------------------ consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 CCCGCCACCATGGCTCGCCGGAGCGGCCTAATGCTACTACTCCTCGCCGCCGCCGCTGTC 120 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 ------------------------------------------------------------ consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 GCCTCCGCGGCCGTGCCGCCGTCGTGCGAGCGCATCGAGTGCCCGTCGTACGAGGTGGTG 180 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 ------------------------------------------------------------ consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 GACAGCGCCAACGGGTTCGAGATCCGGCGGTACAGCGACGCCATGTGGGCTTCCACCGCC 240 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 ------------------------------------------------------------ consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 CCCATCGAGGACATCTCCTTCGTCGCCGCCACCCGCACCGGCTTCCTCCAGTTGTTCAAC 300 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 ------------------------------------------------------------ consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 TACATCCAGGGGAAGAACGCGTACAACGAGACGATCGAGATGACGGCGCCGGTGCTGACG 360 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 ----------------------------------------TCGTGGTCAGCTTCTACTGC 20 consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 CAGGTGGCGCCGAGCGACGGGCCGTTCTGCGTCTCCTCCTTCGTGGTCAGCTTCTACGTG 420 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 CGGCGAANAACCAGCCGGATCCGCCGCCGGCGGAAGGGGCTGCACTTCAGAGGTGGGCCG 80 consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 CCGGCGAAGAACCAGCCGGACCCGCCGCCGGCGGAGGGGCTGCACGTGCAGAGGTGGGCC 480 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 GGGCCAGGTACGCCGCTGTTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGC 140 consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 GGGGCCAGGTACGCCGCTGTGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGC 540 consensus_15273#2 ------------------------------------------------------------ consensus_15273#1 GANCAGGNCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCC 200 consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 GAGCAGGCCGCGCTGCTCGACGCCAGCCTGCAGGGGACCAGGTGGGCCGCCGCCGTGTCC 600 consensus_15273#2 --------------------GCGGATATCAGCGAATGTGTTTANTNTCCNGGGGAANAAC 40 consensus_15273#1 GACGGGCGCAGGGCCGACCNACGTCGTCGTACACGGTGGCCCAGTACAACTCGCCGTTCG 260 consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 GACGGGCGCAGGGCCGACCCGACGTCGTCGTACACGGTGGCGCAGTACAACTCGCCGTTC 660 consensus_15273#2 GCGTACAACGAGACGATCGANATGACGGCGCCGGTGCTGACGCAGGTGGCGCCGANCGAC 100 consensus_15273#1 AGTTCAGCGGTCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGAC 320 consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 GAGTTCAGCGGCAGGGTCAACGAGATATGGATGCTCTTCGACGCGAAGGATGCATCCGAC 720 consensus_15273#2 GGGCCGTTCTGCGTCTCCTCCTTCGTGGTCAGCTTCTACGTGCCGGCGAANAACAGCCGG 160 consensus_15273#1 ATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGAC 380 consensus_15273#3 ------------------------------------------------------------ consensus_15273#0 ATGTAACGCGATGAGCGCGCGGCAATTCCAAATCTTCAAATGTTCACCGGAGTAGTAGAC 780 consensus_15273#2 ACCCGCCGCCGGCGGAGGGGCTGCACGTGCANANGTGGGCCGGGGCCAGGTACGCCGCTG 220 consensus_15273#1 TCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAA 440 consensus_15273#3 ----TCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAA 56 consensus_15273#0 TCGATCGCACAGCTAGTGTAATCTTCAAGCTCCTGGTCGGAAGAATAATGGCATCTTAAA 840 consensus_15273#2 TGCGCCGCTTCGGCGGCTTCGTGGCCGACTCCGACGTCGGCGANCANGCCGCGCTGCTCG 280 *** * * * * * * * ***** ** consensus_15273#1 GCCCTAAACTGC------TCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAG 494 consensus_15273#3 GCCCTAAACTGC------TCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAG 110 consensus_15273#0 GCCCTAAACTGC------TCGAGTGAACTGTTTTTTTGCACTGTAAAGTATGTAGTTGAG 894 consensus_15273#2 ACGCCAGCCTGCAGGGGANCANGTGGGCCGCCGCCGTGT-CCGACGGGCGCAGGGCCGAC 339 * * * **** * *** * * ** * * * * ** consensus_15273#1 TTGTGACTCGTGCGTATCGAGATTAACAACAA-TAAAAGTTCTGTTTAGTCAACTATTTT 553 consensus_15273#3 TTGTGACTCGTGCGTATCGAGATTAACAACAA-TAAAAGTTCTGTTTAGTCAACTATTTT 169 consensus_15273#0 TTGTGACTCGTGCGTATCGAGATTAACAACAA-TAAAAGTTCTGTTTAGTCAACTATTTT 953 consensus_15273#2 CCNACGTCCTCNTACACGGTGGCGCANTACAACTCNCCNTTCGANTTCANCGGCAGGGTC 399 * * * * * **** * *** ** * * * consensus_15273#1 AACGCATGATTTAACGGGGAACATCAATATATAAAAAAAAAAAAAAAAAAAAAAAAAAAA 613 consensus_15273#3 AACGCA--------------------------AAAAAAAAAAAAAAAAAAAAAAAAAAAA 203 consensus_15273#0 AACGCATGATTTAAC-----------------GGGGAACATCAATATATATACCTTTTCA 996 consensus_15273#2 NACNAAATATGGATGCTC----------TTCCACNCNAAAGATGCATCCNACATGTTACG 449 ** * * * * consensus_15273#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA-------------------------- 647 consensus_15273#3 AAAAAAAAAAAAAAAAAAA----------------------------------------- 222 consensus_15273#0 GCTCTGTTTCGAAGAAAAA----------------------------------------- 1015 consensus_15273#2 CNATTAACGCGCGGCAATTCCCAATCTTCNAATGTTCNCCGGANTNATANACTCCATCGC 509 ** consensus_15273#1 ------------------------ consensus_15273#3 ------------------------ consensus_15273#0 ------------------------ consensus_15273#2 NCANCTTGTGTTATCTTCNANCTC 533 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||