cluster # 15282

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15282 cluster # 15282 Sequences # 21 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15282#0 length = 1465 sequences # 19

consensus_15282#1 length = 497 sequences # 1
consensus_15282#2 length = 271 sequences # 1

consensusID : consensus_15282#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 1465
fasta sequence

                              [CCGCCCCCTGATCCGCGA-GCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGCATGCTC-TTCCACGACTGC-TTTGTCGAGGGTTGTGATGCTTCGATCCTCCTGGACCCGACGCCGTTCAACCCGACGCCAGAGAAGC-TGAGCGCGCCGAACAACCCGTCCATGC-GGGGCTTCGACCTCATCGACGCGATCAAGCACGCCGTGGAGGCGGCGTGCCCGGGCGTCGTCTCGTGCGCCGACATCATCGCCTTCGCGGCGCGCGACGCCACCTACTTCCTCAGCGGCGGGAAGGTCTACTTCGACATGCCGTCGGGCCGCCGCGACGGGACCTTCTCCAACGACTCCGGCCCGATCGACTTCCTCCCGCCGCCGACGTCCAACCTCAGCGACCTCGTCTCCAGCTTCGCCGTCAAGGGCCTCTCCGTGGAGGACATGGTGGTGCTCTCGGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCCCCGACCGCCTCAACGCCTCCGTCTTCTCCGACATCGACGGCGGCTTCGCCTGGTTCCTCAGGTCGCAGTGCCCGCTCGACGCGACGCCCGGCGGCAACGATCCCACGGTGATGCTGGACTTCGTGACGCCCAACACGCTGGACAACCAGTACTAC-AAGAACGTGCTCGACCACAAGGTGCTC-TT-CACC-TCTGACGCGGC-GCTCCTGACGTCGCCGGAGACGGCGAAGATGGTGGTGGACAACGCCGTCATCCCC--GGGTGGTGGGAGGACAGGTTCAAGGCGGCCAT-GGTGAAGTTGGCGAGCATCCA-GGTGAAGACCGGGTACCA-GGGGCAGAT-CAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCT-GGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTATATATTGATGTTTATAAGAAATTTGAAAAAA]

[+] EMBL OSS2372A             [CCGCCCACGCGTCCGCGA GCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK120411             [      CCTGATCATCGA GCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGCATGCTC TTCCACGACTGC TTTGTCGAGGGTTGTGATGCTTCGATCCTCCTGGACCCGACGCCGTTCAACCCGACGCCAGAGAAGC TGAGCGCGCCGAACAACCCGTCCATGC GGGGCTTCGACCTCATCGACGCGATCAAGCACGCCGTGGAGGCGGCGTGCCCGGGCGTCGTCTCGTGCGCCGACATCATCGCCTTCGCGGCGCGCGACGCCACCTACTTCCTCAGCGGCGGGAAGGTCTACTTCGACATGCCGTCGGGCCGCCGCGACGGGACCTTCTCCAACGACTCCGGCCCGATCGACTTCCTCCCGCCGCCGACGTCCAACCTCAGCGACCTCGTCTCCAGCTTCGCCGTCAAGGGCCTCTCCGTGGAGGACATGGTGGTGCTCTCGGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCCCCGACCGCCTCAACGCCTCCGTCTTCTCCGACATCGACGGCGGCTTCGCCTGGTTCCTCAGGTCGCAGTGCCCGCTCGACGCGACGCCCGGCGGCAACGATCCCACGGTGATGCTGGACTTCGTGACGCCCAACACGCTGGACAACCAGTACTAC AAGAACGTGCTCGACCACAAGGTGCTC TT CACC TCTGACGCGGC GCTCCTGACGTCGCCGGAGACGGCGAAGATGGTGGTGGACAACGCCGTCATCCCC  GGGTGGTGGGAGGACAGGTTCAAGGCGGCCAT GGTGAAGTTGGCGAGCATCCA GGTGAAGACCGGGTACCA GGGGCAGAT CAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCT GGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTA                                                        ]
[+] EMBL AK099751             [      CCTGATCATCGA GCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGCATGCTC TTCCACGACTGC TTTGTCGAGGGTTGTGATGCTTCGATCCTCCTGGACCCGACGCCGTTCAACCCGACGCCAGAGAAGC TGAGCGCGCCGAACAACCCGTCCATGC GGGGCTTCGACCTCATCGACGCGATCAAGCACGCCGTGGAGGCGGCGTGCCCGGGCGTCGTCTCGTGCGCCGACATCATCGCCTTCGCGGCGCGCGACGCCACCTACTTCCTCAGCGGCGGGAAGGTCTACTTCGACATGCCGTCGGGCCGCCGCGACGGGACCTTCTCCAACGACTCCGGCCCGATCGACTTCCTCCCGCCGCCGACGTCCAACCTCAGCGACCTCGTCTCCAGCTTCGCCGTCAAGGGCCTCTCCGTGGAGGACATGGTGGTGCTCTCGGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCCCCGACCGCCTCAACGCCTCCGTCTTCTCCGACATCGACGGCGGCTTCGCCTGGTTCCTCAGGTCGCAGTGCCCGCTCGACGCGACGCCCGGCGGCAACGATCCCACGGTGATGCTGGACTTCGTGACGCCCAACACGCTGGACAACCAGTACTAC AAGAACGTGCTCGACCACAAGGTGCTC TT CACC TCTGACGCGGC GCTCCTGACGTCGCCGGAGACGGCGAAGATGGTGGTGGACAACGCCGTCATCCCC  GGGTGGTGGGAGGACAGGTTCAAGGCGGCCAT GGTGAAGTTGGCGAGCATCCA GGTGAAGACCGGGTACCA GGGGCAGAT CAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCT GGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTA                                                        ]
[+] EMBL OSR16061A            [            CCGCGA GCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGTCAGAACCCCGGCAATNGCGCCGCCGTCATNCGNATGNTN TTACACGACTGC TTTGTNGAGGGTTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU032308             [           ntncCGATGCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCNAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCNCCCAGGCCGAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU065457             [                         CTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACNCCGGCAATGGCGCCG CGTCATCCGCATGCTC TTCCACGACTGCTTTTGTCGANGGTTGTGATGCTTCGATCCTCCTGGACCCGANGGCGTTCAAn                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL AU065429             [                         CTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGTTTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGCATGCTCTTTCCACGACTGC TTTGTCGAGGGTTGTGATGCTTCGATCCTCCTGGANCCGACGGCGTTNAACCCGACGGCAGAGAAGCTTAAGCGNGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSR14201A            [                         CTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCANGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGNATGCTC TTCCACGACTGT TTTGTCGAGGGTTGTGATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CA754869             [                            TCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGCATGCTC TTCCACGACTGC TTTGTCGAGGGTTGTGATGCTTCGATCCTCCTGGACCCGACGCCGTTCAACCCGACGCCCGAGAAGC TGAGCGCGCCGAACAACCCGTCCATGC GGGGCTTCGACCTCATCGACGCGATCAAGCACGCCGTGGAGGCGGCGTGCCCGGGCGTCGTCTCGTGCGCCGACNTCATCGCCTTCGCGGCGCGCGACGCCCCCTACTTCCTCAGCGGCGGGAAGGTCTACTTCGACATGCCGTCGGGCCGCCGCGACGGGGACTTCTCC ACGACTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CA754816             [                            TCTCTTCCTGTTATTAGCTATAGCAGCTTAATTAGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAGCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL OSS11107A            [                                                                                                                        GCCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCGTGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGCATGGTC TTCCACGACTGC TTTGTCGAGGGTTGTGATGCTTCGATCCTCCTGGACCCGACGGCGTTCAACCCGACGGCAGAGAAGC TGAGCGCGCCGAACAACCCGTCCATGCGGGGGCTTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB656627             [                                                                                                                                                                                                                           GCGTACTACCGCGACAAGTGCCCCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCAATGGCGCCGCCGTCATCCGCATGCTC TTCCACGACTGC TTTGTCGAGGGTTGTGATGCTTCGATCCTCCTGGACCCGACGCCGTTCAACCCGACGCCAGAGAAGC TGAGCGCGCCGAACAACCCGTCCATGC GGGGCTTCGACCTCATCGACGCGATCAAGCACGCCGTGGAGGCGGCGTGCCCGGGCGTCGTCTCGTGCGCCGACATCATCGCCTTCGCGGCGCGCGACGCCACCTACTTCCTCAGCGGCGGGAAGGTCTACTTCGACATGCCGTCGGGCCGCCGCGACGGGACCTTCTCCAACGACTCCGGCCCGATCGACTTCCTCCCGCCGCCGACGTCCAACCTCAGCGACCTCGTCTCCAGCTTCGCCGTCAAGGGCCTCTCCGTGGAGGACATGGTGGTGCTCTCGGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCCCCGACCGCCTCAACGCCTCCGTCTTCTCCGACATCGACGGCGGCTTCGCCTGGTTCCTCAGGTCGCAGTGCCCGCTCGACGCGACGCCCGGCGGCAACGATCCCACGGTGATGCTGGACTTCGTGACGCCCAACACGCTGGACAACCAGTACTAC AAGAACGTGCTCGACCACAAGGTGCTC TT CACC TCTGACGCGGC GCTCCTGACGTCGCCGGAGACGGCGAAGATGGTGGTGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CB656628             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TCTCCGTGGAGGACATGGTGGTGCTCTCGGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCCCCGACCGCCTCAACGCCTCCGTCTTCTCCGACATCGACGGCGGCTTCGCCTGGTTCCTCAGGTCGCAGTGCCCGCTCGACGCGACGCCCGGCGGCAACGATCCCACGGTGATGCTGGACTTCGTGACGCCCAACACGCTGGACAACCAGTACTAC AAGAACGTGCTCGACCACAAGGTGCTC TT CACC TCTGACGCGGC GCTCCTGACGTCGCCGGAGACGGCGAAGATGGTGGTGGACAACGCCGTCATCCCC  GGGTGGTGGGAGGACAGGTTCAAGGCGGCCAT GGTGAAGTTGGCGAGCATCCA GGTGAAGATCGGGTACCA GGGGCAGAT CAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCT GGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTATATATTGATGTTTAT                ]
[+] EMBL AU032309             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CTGGACAACCAGTACTACAAAGAACNTGCTCGACCACAAGGTGCTCNTTCCACCTTCTGACGCGGCTGCTCCTGACNTCGCCGGAGACGGCGAAGATGNTGGTGGACAACGCCGTCATCCCCCGGGGTGGTGGGAGGACAGGTTCAAGGCGGCCATNGGTGAAGTTGGCGAGCATCCAGGGTGAAGACCGGGTACCAGGGGGCAGAT CAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCTGGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAAAAA                                         ]
[+] EMBL AU184741             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTCATCCCC  GGGTGGTGGGAGGACAGGTTCAAGGCGGCCAT GGTGAAGTTGGCGAGCATCCA GGTGAAGACCGGGTACCA GGGGCAGAT CAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCT GGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAaaa                                      ]
[+] EMBL AU184800             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGTGGGAGGACAGGTTCAAGGCGGCCAT GGTGAAGTTGGCGAGCATCCA GGTGAAGACCGGGTACCA GGGGCAGAT CAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCT GGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTATATATTGATGTTAAAAA              ]
[+] EMBL C20486               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGCCGGCCAT GGTGAAGTTGGCGAGCATCCA GTTGAAGACCGGGTACCA GGGGCAGAT CAGGAAGAACTGCAGGGTCATCAACTACTGATTAANCTACAAGTTTAGCTGCGTNATTCAATTACCT GGTNAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAANCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCANATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGNATAATTGTAAGTTAAGTTTTTTGCAACAAaa                                       ]
[+] EMBL AU031744             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    AGTTGNCGAGCATCCA GGTGAAGNCCGGGTACCA GGGGCAGATCCAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCT GGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTATATATTGATGTTTATCTGAAATTTGAAAAAA]
[+] EMBL AU032399             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             TTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTATATATTGATGTTAAAAA              ]




>consensus_15282#0
CCGCCCCCTGATCCGCGAGCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATT
AGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAG
CCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCG
TGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCC
CCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCA
ATGGCGCCGCCGTCATCCGCATGCTCTTCCACGACTGCTTTGTCGAGGGTTGTGATGCTT
CGATCCTCCTGGACCCGACGCCGTTCAACCCGACGCCAGAGAAGCTGAGCGCGCCGAACA
ACCCGTCCATGCGGGGCTTCGACCTCATCGACGCGATCAAGCACGCCGTGGAGGCGGCGT
GCCCGGGCGTCGTCTCGTGCGCCGACATCATCGCCTTCGCGGCGCGCGACGCCACCTACT
TCCTCAGCGGCGGGAAGGTCTACTTCGACATGCCGTCGGGCCGCCGCGACGGGACCTTCT
CCAACGACTCCGGCCCGATCGACTTCCTCCCGCCGCCGACGTCCAACCTCAGCGACCTCG
TCTCCAGCTTCGCCGTCAAGGGCCTCTCCGTGGAGGACATGGTGGTGCTCTCGGGCGCCC
ACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCCCCGACCGCCTCAACGCCTCCGTCT
TCTCCGACATCGACGGCGGCTTCGCCTGGTTCCTCAGGTCGCAGTGCCCGCTCGACGCGA
CGCCCGGCGGCAACGATCCCACGGTGATGCTGGACTTCGTGACGCCCAACACGCTGGACA
ACCAGTACTACAAGAACGTGCTCGACCACAAGGTGCTCTTCACCTCTGACGCGGCGCTCC
TGACGTCGCCGGAGACGGCGAAGATGGTGGTGGACAACGCCGTCATCCCCGGGTGGTGGG
AGGACAGGTTCAAGGCGGCCATGGTGAAGTTGGCGAGCATCCAGGTGAAGACCGGGTACC
AGGGGCAGATCAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTTAGCT
GCGTGATTCAATTACCTGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATA
GTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATG
TGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTT
GTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGG
TCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTATATATT
GATGTTTATAAGAAATTTGAAAAAA

consensusID : consensus_15282#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 497
fasta sequence

                              [GACGGCGAAGATGGTGGTGGACAAACCCGTTCATCCCCGGGGTGGTGGGAGGACAGGTTCAAGGCGCCCATGGTGAAAGTNGGCGAGCATTCCAGGTGAAGACCGGGTACCAGGGGCAGATCAGGAAGAACTGCAGGTTCATCAANTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCTGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGNGCCCGCTATATGNCNGATGTTTATNTAAGGGCCATAAAAA]

[+] EMBL C20508               [GACGGCGAAGATGGTGGTGGACAAACCCGTTCATCCCCGGGGTGGTGGGAGGACAGGTTCAAGGCGCCCATGGTGAAAGTNGGCGAGCATTCCAGGTGAAGACCGGGTACCAGGGGCAGATCAGGAAGAACTGCAGGTTCATCAANTACTGATTAATCTACAAGTTTAGCTGCGTGATTCAATTACCTGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGNGCCCGCTATATGNCNGATGTTTATNTAAGGGCCATAAAAA]




>consensus_15282#1
GACGGCGAAGATGGTGGTGGACAAACCCGTTCATCCCCGGGGTGGTGGGAGGACAGGTTC
AAGGCGCCCATGGTGAAAGTNGGCGAGCATTCCAGGTGAAGACCGGGTACCAGGGGCAGA
TCAGGAAGAACTGCAGGTTCATCAANTACTGATTAATCTACAAGTTTAGCTGCGTGATTC
AATTACCTGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTTGATAGTTTCACAC
CCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTGGATGTGACTTTTG
CTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTCATTTGTGAACCCC
AAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAATAAGGTCATATGTA
CTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGNGCCCGCTATATGNCNGATGTTTA
TNTAAGGGCCATAAAAA

consensusID : consensus_15282#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence

                              [ACGGTTTGANAGTTTCANACCCNCCTTGANCAANNCGNAANCGTACNTGTTGATGATGTTATNATTGGATGTGNCTTTTGCTTCACATTTATGNTCCCCCNCTTTTGTTACCATTCCTTAANTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGNCCTAATTGTGTAATAAGGNNATATGTACTTGGNANAANTGTNAGTTAAGTTTTTTGCAANAAGTNNNNNCTATAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C20527               [ACGGTTTGANAGTTTCANACCCNCCTTGANCAANNCGNAANCGTACNTGTTGATGATGTTATNATTGGATGTGNCTTTTGCTTCACATTTATGNTCCCCCNCTTTTGTTACCATTCCTTAANTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGNCCTAATTGTGTAATAAGGNNATATGTACTTGGNANAANTGTNAGTTAAGTTTTTTGCAANAAGTNNNNNCTATAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_15282#2
ACGGTTTGANAGTTTCANACCCNCCTTGANCAANNCGNAANCGTACNTGTTGATGATGTT
ATNATTGGATGTGNCTTTTGCTTCACATTTATGNTCCCCCNCTTTTGTTACCATTCCTTA
ANTCCTCATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGNCCTAATT
GTGTAATAAGGNNATATGTACTTGGNANAANTGTNAGTTAAGTTTTTTGCAANAAGTNNN
NNCTATAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15282#0      CCGCCCCCTGATCCGCGAGCACTTCTCTCTCTTCCTGTTATTAGCTATAGCAGCTTAATT 60
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      AGCTTAAGCACAAAAGGTACAGTAAGCCTAAGCTAGCTACACACTAAGCAAGCTTATTAG 120
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      CCATGGCTTCATCACCAAGTCTGCCATTGGTGACGTGTGCCCTGCTGCTGCTGCTGGCCG 180
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      TGGCATGCCAGGCTCACCCTTACTGGCCACTGGAGTTGGCGTACTACCGCGACAAGTGCC 240
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      CCCAGGCCGAGGCCGTCGTCAAGGCCGTCGTCGGGGAGGCCGTCCGCCAGAACCCCGGCA 300
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      ATGGCGCCGCCGTCATCCGCATGCTCTTCCACGACTGCTTTGTCGAGGGTTGTGATGCTT 360
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      CGATCCTCCTGGACCCGACGCCGTTCAACCCGACGCCAGAGAAGCTGAGCGCGCCGAACA 420
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      ACCCGTCCATGCGGGGCTTCGACCTCATCGACGCGATCAAGCACGCCGTGGAGGCGGCGT 480
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      GCCCGGGCGTCGTCTCGTGCGCCGACATCATCGCCTTCGCGGCGCGCGACGCCACCTACT 540
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      TCCTCAGCGGCGGGAAGGTCTACTTCGACATGCCGTCGGGCCGCCGCGACGGGACCTTCT 600
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      CCAACGACTCCGGCCCGATCGACTTCCTCCCGCCGCCGACGTCCAACCTCAGCGACCTCG 660
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      TCTCCAGCTTCGCCGTCAAGGGCCTCTCCGTGGAGGACATGGTGGTGCTCTCGGGCGCCC 720
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      ACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCCCCGACCGCCTCAACGCCTCCGTCT 780
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      TCTCCGACATCGACGGCGGCTTCGCCTGGTTCCTCAGGTCGCAGTGCCCGCTCGACGCGA 840
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      CGCCCGGCGGCAACGATCCCACGGTGATGCTGGACTTCGTGACGCCCAACACGCTGGACA 900
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      ACCAGTACTACAAGAACGTGCTCGACCACAAGGTGCTCTTCACCTCTGACGCGGCGCTCC 960
consensus_15282#1      ------------------------------------------------------------
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      TGACGTCGCCGGAGACGGCGAAGATGGTGGTGGACAACGCCGT-CATCCCCGGG-TGGTG 1018
consensus_15282#1      -------------GACGGCGAAGATGGTGGTGGACAAACCCGTTCATCCCCGGGGTGGTG 47
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      GGAGGACAGGTTCAAGGCGGCCATGGTGAA-GTTGGCGAGCAT-CCAGGTGAAGACCGGG 1076
consensus_15282#1      GGAGGACAGGTTCAAGGCGCCCATGGTGAAAGTNGGCGAGCATTCCAGGTGAAGACCGGG 107
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      TACCAGGGGCAGATCAGGAAGAACTGCAGGGTCATCAACTACTGATTAATCTACAAGTTT 1136
consensus_15282#1      TACCAGGGGCAGATCAGGAAGAACTGCAGGTTCATCAANTACTGATTAATCTACAAGTTT 167
consensus_15282#2      ------------------------------------------------------------
                                                                                   

consensus_15282#0      AGCTGCGTGATTCAATTACCTGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTT 1196
consensus_15282#1      AGCTGCGTGATTCAATTACCTGGTGAAGTACGTGCTCAACGATGACGACGTACACGGTTT 227
consensus_15282#2      -----------------------------------------------------ACGGTTT 7
                                                                            *******

consensus_15282#0      GATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTG 1256
consensus_15282#1      GATAGTTTCACACCCTCCTTGATCAAGTCGCAAGCGTACGTGTTGATGATGTTATGATTG 287
consensus_15282#2      GANAGTTTCANACCCNCCTTGANCAANNCGNAANCGTACNTGTTGATGATGTTATNATTG 67
                       ** ******* **** ****** ***  ** ** ***** *************** ****

consensus_15282#0      GATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTC 1316
consensus_15282#1      GATGTGACTTTTGCTTCACATTTATGTTCTCCCTCTTTTGTTACCATTCCTTAATTCCTC 347
consensus_15282#2      GATGTGNCTTTTGCTTCACATTTATGNTCCCCCNCTTTTGTTACCATTCCTTAANTCCTC 127
                       ****** ******************* ** *** ******************** *****

consensus_15282#0      ATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAAT 1376
consensus_15282#1      ATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGACCTAATTGTGTAAT 407
consensus_15282#2      ATTTGTGAACCCCAAGGTTTACATGCTATGGATTTCTTTGTTTTGNCCTAATTGTGTAAT 187
                       ********************************************* **************

consensus_15282#0      AAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGTGCCCGCTATA 1436
consensus_15282#1      AAGGTCATATGTACTTGGAATAATTGTAAGTTAAGTTTTTTGCAACAAGNGCCCGCTATA 467
consensus_15282#2      AAGGNNATATGTACTTGGNANAANTGTNAGTTAAGTTTTTTGCAANAAGTNNNNNCTATA 247
                       ****  ************ * ** *** ***************** ***      *****

consensus_15282#0      TAT-TGATGTTTATAAGAAATTTGAAAAAA 1465
consensus_15282#1      TGNCNGATGTTTATNTAAGGGCCATAAAAA 497
consensus_15282#2      AAAAAAA-----AAAAAAAAAAAAAAAAA- 271
                             *     *    *       ****