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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15304#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1207 fasta sequence
[GTAGAAAAAGAAAATACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGA-TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGGGCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT]
[+] EMBL CF339250 [GTAGAAAAAGAAAATACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGA ]
[+] EMBL CF338252 [ ACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGATTAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGNCC ]
[+] EMBL AK067858 [ CGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACAT ]
[+] EMBL AK060030 [ AGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCACCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGAT ]
[+] EMBL AK106030 [ AGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGTTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGGGCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT]
[+] EMBL AK061467 [ AGAAGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGTTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGGGCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT]
[+] EMBL CB618715 [ AGCGCAAGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAG ]
[+] EMBL OSS2384A [ AGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTNATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGC ]
[+] EMBL OSS3369A [ AGGAGGA TAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGNCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGNCCGGNTCCTTCCTCCTCGACCTCAAGACCCACTNCAAGGATGTGCGCTTNCAATTCATGAACTCCGNGCTGCTGCTCGACCGNCGCGTCAG CTCACCTACACGGACTCCACCACCCTCTCCCCGGGNCC ]
[+] EMBL AU083429 [ GCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAGGCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAG CTCACCTACACG ]
[+] EMBL AU173124 [ CACGGCCGCCGCCACCCTCGCCTTCACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGCGGGCCCTCCCTCGAGGGCCTCATCCTCACCCTCGAGAAGCCCGGCTCCTTCCTCCTCGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCTCGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCC ]
[-] EMBL CB618716 [ CAGCCTCACNTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAAGCTGCCCGCCCGCACCGCCCTTGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAGCCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATA ]
[+] EMBL AU173125 [ AGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAATGCCTTTGGTGGCGAGAATTCGAGCATTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTTGTAAAACGTTGAATTAGCTTGCCAaaaa ]
consensusID : consensus_15304#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 863 fasta sequence
[CGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT-CTGT-CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNAAAAAANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNAANNNNNAAAAANANNNNNNNNNNGGGGGGGGGGGGGGGGGGAAAAAANNNAANNAAAGGGGGAAAATTAANNGGCCGGAAGGGGGGGGGNNNNAAAAAAAAGGGGGGGAGAGGGAAAAAAGGGGGGANAAAAAAAAAAAAANNNAAAAGAAAAGAGAAANNNANNNGAAGAGGGGGAGAAAAAAAAAGAGGGGGGCGGGGGGGGGNNNNGAAAAAAAGGGGGGAAANNGAGAGGGGAAAAGGGGCCCCCCCNAGNNNNGGNANNAAAAAGCGCGGGGGGGGTGCGGGGACC]
[+] EMBL CA756827 [CGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNAAAAAANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNANNNNNNNNAANNNNNAAAAANANNNNNNNNNNGGGGGGGGGGGGGGGGGGAAAAAANNNAANNAAAGGGGGAAAATTAANNGGCCGGAAGGGGGGGGGNNNNAAAAAAAAGGGGGGGAGAGGGAAAAAAGGGGGGANAAAAAAAAAAAAANNNAAAAGAAAAGAGAAANNNANNNGAAGAGGGGGAGAAAAAAAAAGAGGGGGGCGGGGGGGGGNNNNGAAAAAAAGGGGGGAAANNGAGAGGGGAAAAGGGGCCCCCCCNAGNNNNGGNANNAAAAAGCGCGGGGGGGGTGCGGGGACC]
[-] EMBL CF328202 [ GTTTCAAGGAGGGGATGCCATCAAGGCCACTTACCAAGCTTCCACCAAGTTCTTGGCCCTGGATTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT TTGACCAAAGCAAAGCGCCAAAGTTAATAGCGGAGAGCACGTGGAATTACGAGATTTGATTGCTTTTTTTAGGAGGCAGGCAATTCCTGTTTAAGAAGCACCCTTGTCAAACTGGTTGTCTTGTACTTGGGAACTATTCTTTTTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGTTACGGCATTGACAATGAACCCCGATTATTTTTTACTATATTTTTTAAGGCACATGATATGATTGACCAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU183233 [ AGGAGGGGATGCCATCAAGGCCACCTACCAAGCCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAANAAGCACCCNTGTCANACTGGTTGTCTTGNACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAANACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGANCAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU083430 [ CCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCAAGGTCGCAGCGTCATTTGAT CTGT CTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAA ]
[+] EMBL AU097138 [ CGCAGCGTCATTTGATCCTGTCCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACAAA ]
[-] EMBL D42509 [ GAATTACGAGATCTGATTG CNCNNCTAGGA GCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTCGTACTTGGG ACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATA ]
consensusID : consensus_15304#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 828 fasta sequence
[ATTGTATGTGTTAGCTCATGCATCAACAACCCTTAATGATATGGATGGGTTTTGGGCCGGCTTAAGAGTCAGCCTTCATGACATGCCTTAACTGATACTGGTACAGAAGGGTGCTGACTTTATTCTAACTTATCTAAAGAAGACTATCTTCCTATATCTCAGTCTCACACAGAGAGACCATGATATGTGCCACAATGCAATATCGTAATTCTGTGACCATATTGTGCTATTGATGGCAAAGAACAAATATTTGGCTAGTTATATTGATTTGTTGCCTGCTTGTTTGAGTTCATTTAACAAAGAATGTCAATAGTACTTTTTGTTCAAAAAGGTACCCATGCAACCCTGCTTAAATCCGCAACAAGGCACTGGTGTGCTGTCTGACTAGCTCCTTCCGAACATTGAAAGCAACTTGCTATGCTATTTTCACTATAGATGTTTGTAGAGGTACTCTTATAGCTACCGACCATGTTTTTCATCTTGACCATGTTATGCTTCTCTCTTCAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACGTATATTCTCTAATGCACATGATATGATTGACCAAAAAAAAAGA]
[-] EMBL CB635563 [ATTGTATGTGTTAGCTCATGCATCAACAACCCTTAATGATATGGATGGGTTTTGGGCCGGCTTAAGAGTCAGCCTTCATGACATGCCTTAACTGATACTGGTACAGAAGGGTGCTGACTTTATTCTAACTTATCTAAAGAAGACTATCTTCCTATATCTCAGTCTCACACAGAGAGACCATGATATGTGCCACAATGCAATATCGTAATTCTGTGACCATATTGTGCTATTGATGGCAAAGAACAAATATTTGGCTAGTTATATTGATTTGTTGCCTGCTTGTTTGAGTTCATTTAACAAAGAATGTCAATAGTACTTTTTGTTCAAAAAGGTACCCATGCAACCCTGCTTAAATCCGCAACAAGGCACTGGTGTGCTGTCTGACTAGCTCCTTCCGAACATTGAAAGCAACTTGCTATGCTATTTTCACTATAGATGTTTGTAGAGGTACTCTTATAGCTACCGACCATGTTTTTCATCTTGACCATGTTATGCTTCTCTCTTCAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGCTTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACGTATATTCTCTAATGCACATGATATGATTGACCAAAAAAAAAGA]
consensusID : consensus_15304#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 509 fasta sequence
[TCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAACCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCTAGGTCCCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACCAGATCTGATTGCCTCTTCTACGAGGCAGGCAACTCCTGCTTAATAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACTCCTGCAACCC]
[+] EMBL CB678809 [TCCTACGCGCACGGCCAAGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGCCGTCACCCGCAAGTTTCAAGGAGGGGATGCCATCAAGGCCACCTACCAAACCTCCACCAAGCTCCTCGCCCTCGACTGGACCAGGGACTCCAAGATCGGTGCCTCCTTCTAGGTCCCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAGCGGAGAGCACGTGGAATTACCAGATCTGATTGCCTCTTCTACGAGGCAGGCAACTCCTGCTTAATAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGCAACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTCATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACTATATTCTCTAATGCACATGATATGATTGAACTCCTGCAACCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15304#0 GTAGAAAAAGAAAATACGAGGACGACGGCGGCGGCGACGATTCCAACGAGAGGAGAAGCG 60
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 CAAGGAGGATAGGCGGCGGCGGCGACTGGGCGAAAGTGATCAGAGCTCGCGAGGATGAAG 120
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 GCGACGGTGAAGGGCAGGTACGAGGGCGACAAGGCCACGGCCGCCGCCACCCTCGCCTTC 180
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 ACCCCCTCCGCCGCCGACCTCCGCTTCAAGGCCTCCGCCACCGATGCCGCCTTCGCCCGC 240
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 ---------------------------------ATTGTATGTGTTAGCTCATGCATCAAC 27
consensus_15304#0 GGGCCCTCCCTCGAGGGCCTCATCCTCACCC--TCGAGAAGCCCGGCTCCTT--CCTCCT 296
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 AACCCTTAATGATATGGATGGGTTTTGGGCCGGCTTAAGAGTCAGCCTTCATGACATGCC 87
consensus_15304#0 CGACCTCAAGCCCCACTCCAAGGATGTGCGCTTCCAATTCATGAACTCCGCGCTGCTGCT 356
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 TTAACTGATACTGGTACAGAAGGGTGCTGACTTTATTCTAACTTATCTAAAGAAGACTAT 147
consensus_15304#0 CGACCGCCGCGTCAGCCTCACCTACACGCACTCCACCACCCTCTCCCCGGGCCCCGCCAA 416
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 CTTCCTATATCTCAGTCTCACACAGAGAGACCATGATATGTGCCACAATGCAATATCGTA 207
consensus_15304#0 GCTGCCCGCCCGCACCGCCCTCGACGGCTCCCTCACCTTCGATCCGGCCAACAAGCTCAG 476
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 ATTCTGTGACCATATTGTGCTATTGATGGCAAAGAACAAATATTTGGCTAGTTATATTGA 267
consensus_15304#0 CCTCTCCCACACGCTCGGCTCCTCCGGATGCCGCGTCAAGTACTCCTACGCGCACGGCCA 536
consensus_15304#3 -------------------------------------------TCCTACGCGCACGGCCA 17
consensus_15304#1 ------------------------------------------------------------
consensus_15304#2 TTTGTT------GCCTGCTTGTTTGAGTTCATTTAACAAAGAATGTCAATAGTACTTTTT 321
consensus_15304#0 AGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGC 596
consensus_15304#3 AGACCGCCTCACCACCATCGAGCCCTGCTTCGACACCGCTAACAACGCCTGGGACTTCGC 77
consensus_15304#1 ------------------------------------CGCTAACAACGCCTGGGACTTCGC 24
consensus_15304#2 GTTCAAAAAGGTACCCATGCAACCCTGCTTAAAT-CCGC-AACAAGGCACTGGTGTGCTG 379
*** ***** ** ** * *
consensus_15304#0 CGTCACCCGCAAGTTTCAAGGAGGGGATGCCAT---CAAGGCCACCTAC----CAAGCCT 649
consensus_15304#3 CGTCACCCGCAAGTTTCAAGGAGGGGATGCCAT---CAAGGCCACCTAC----CAAACCT 130
consensus_15304#1 CGTCACCCGCAAGTTTCAAGGAGGGGATGCCAT---CAAGGCCACCTAC----CAAGCCT 77
consensus_15304#2 TCTGACTAGCTCCTTCCGAACATTGAAAGCAACTTGCTATGCTATTTTCACTATAGATGT 439
* ** ** ** * * * * * ** * * * ** * * * * *
consensus_15304#0 CCACCAAGCTCCTC-----GCCCTCGACTGGACCAGGGACT----CCAAGATCGGTGCCT 700
consensus_15304#3 CCACCAAGCTCCTC-----GCCCTCGACTGGACCAGGGACT----CCAAGATCGGTGCCT 181
consensus_15304#1 CCACCAAGCTCCTC-----GCCCTCGACTGGACCAGGGACT----CCAAGATCGGTGCCT 128
consensus_15304#2 TTGTAGAGGTACTCTTATAGCTACCGACCATGTTTTTCATCTTGACCATGTTATGCTTCT 499
** * *** ** **** * *** * * * **
consensus_15304#0 CCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 760
consensus_15304#3 CCTTCTAGGTCCCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 241
consensus_15304#1 CCTTCAAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 188
consensus_15304#2 CTCTTCAGGTCGCAGCGTCATTTGATCTGTCTGACCAAAGCAAAGCGCCAAAGCTAATAG 559
* * ***** ************************************************
consensus_15304#0 CGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGC 820
consensus_15304#3 CGGAGAGCACGTGGAATTACCAGATCTGATTGCCTCTTCTACGAGGCAGGCAACTCCTGC 301
consensus_15304#1 CGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGC 248
consensus_15304#2 CGGAGAGCACGTGGAATTACGAGATCTGATTGCCTCTTCTAGGAGGCAGGCAACTCCTGC 619
******************** ******************** ******************
consensus_15304#0 TTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 880
consensus_15304#3 TTAATAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 361
consensus_15304#1 TTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 308
consensus_15304#2 TTAAGAAGCACCCTTGTCATACTGGTTGTCTTGTACTTGGGAACTATTCTTTCTGGGTGC 679
**** *******************************************************
consensus_15304#0 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 940
consensus_15304#3 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 421
consensus_15304#1 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 368
consensus_15304#2 AACAATTTCAATACCTACTGCCCTTTGTTCATTTTTGGCTGCCCTATGATTGGAGTTGTC 739
************************************************************
consensus_15304#0 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTAC-TATATTCTCTAATG 999
consensus_15304#3 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTAC-TATATTCTCTAATG 480
consensus_15304#1 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTAC-TATATTCTCTAATG 427
consensus_15304#2 ATGGCGATGCTACGGCATTGACAATGAACACCGATTATCTTTTACGTATATTCTCTAATG 799
********************************************* **************
consensus_15304#0 CACATGATATGATTGAACAAAA------------TGCCTTTGGTGGCGAGAATTCGAGCA 1047
consensus_15304#3 CACATGATATGATTGAACTCC-------------TGCAACCC------------------ 509
consensus_15304#1 CACATGATATGATTGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 487
consensus_15304#2 CACATGATATGATTGACCAAAAAAAAAGA------------------------------- 828
**************** *
consensus_15304#0 TTGGTGTTTGCTCCTTGTTCAGATATACGGTTGATGTTCTTTCCTTCCTTCTGGGAGCTT 1107
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 AAAAAAAAAAAAAAAAAAAAAAAAANNNAAAAAANNNNNNNNNNNNANNNNNNNNNNNNN 547
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 GTAAAACGTTGAATTAGCTTGCCACATTTTTGTTACATTTGTTTGGACAAGACAAGGTGG 1167
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 NNNNNNNNNNNNNNNANNNNNNNNAANNNNNAAAAANANNNNNNNNNNGGGGGGGGGGGG 607
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 GCAGAAGGCAAAAGAAGGAAGAAGCTAAAGAGTGGTTGTT-------------------- 1207
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 GGGGGGAAAAAANNNAANNAAAGGGGGAAAATTAANNGGCCGGAAGGGGGGGGGNNNNAA 667
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 ------------------------------------------------------------
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 AAAAAAGGGGGGGAGAGGGAAAAAAGGGGGGANAAAAAAAAAAAAANNNAAAAGAAAAGA 727
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 ------------------------------------------------------------
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 GAAANNNANNNGAAGAGGGGGAGAAAAAAAAAGAGGGGGGCGGGGGGGGGNNNNGAAAAA 787
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 ------------------------------------------------------------
consensus_15304#3 ------------------------------------------------------------
consensus_15304#1 AAGGGGGGAAANNGAGAGGGGAAAAGGGGCCCCCCCNAGNNNNGGNANNAAAAAGCGCGG 847
consensus_15304#2 ------------------------------------------------------------
consensus_15304#0 ----------------
consensus_15304#3 ----------------
consensus_15304#1 GGGGGGTGCGGGGACC 863
consensus_15304#2 ----------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||