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Oryza sativa
cluster # 15316 cluster # 15316       Sequences # 21       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15316#0 length = 1006 sequences # 14  
consensus_15316#1 length = 491 sequences # 2  
consensus_15316#2 length = 389 sequences # 1  
consensus_15316#3 length = 247 sequences # 4  

consensusID : consensus_15316#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 1006
fasta sequence
                              [CCAATTCCAAAAGCGAAAGCAGAAGCCAACCATTATAACCACCCAAAATCGAATCCCCCAACCAAAAAAGAAGCAACAAGAAGAAGAAGAGAGGAGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCCTCCTGCTCGTCATCATGCTCGTCGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCGA-CGACG-AGAAGTGCGCCGCGTGCGGCC-TGCCCAGCCCCTGCGGCACGACGTGCACGTACGCCAGCCCGCCGCCGCCCGACGTGCTGCCGACTCCGGTCTACTACCCGCCGCCGCCGCCCGTCTACTACCCCCCGCCGTCCCCGCCGCCGGTGGCCTACCCTCCGCCGACCACGCCGTCGACCAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACGCCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTACCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC-TTTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATC-CATATATATGTCTAATCAAATTTCAATTAAAAATGG]

[+] EMBL AK103326             [CCAATTCCAAAAGCGAAAGCAGAAGCCAACCATTATAACCACCCAAAATCGAATCCCCCAACCAAAAAAGAAGCAACAAGAAGAAGAAGAGAGGAGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCCTCCTGCTCGTCATCATGCTCGTCGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCGA CGACG AGAAGTGCGCCGCGTGCGGCC TGCCCAGCCCCTGCGGCACGACGTGCACGTACGCCAGCCCGCCGCCGCCCGACGTGCTGCCGACTCCGGTCTACTACCCGCCGCCGCCGCCCGTCTACTACCCCCCGCCGTCCCCGCCGCCGGTGGCCTACCCTCCGCCGACCACGCCGTCGACCAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACGCCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTACCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC  TTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATC CATATATATGTCTAATCAAATTTCAATTACATGTGG]
[+] EMBL AU068698             [                                                                                     GAAGAGAGGAGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCTTCCTGCTCGTCATCATGCTCGTNGCCGCCACGGNCGCCGCCGCCGACGTCGTCGTCCGCAA GGATG NAAAGTGCGCCGCGTGCGGCCTTGCCCAGCCCCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU068691             [                                                                                     GAAGAGAGGAGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGACTCCTGCTCGTCATCATGCTCGTNGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGNNAGNGANG  NAAGTGCGCNGCGTGCGGAC TGCCCAGCCCCTGCGGCACGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL CB681889             [                                                                                           AGGACAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCCTCCTGCTCGTCATCATGCTCGTCGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCGA CGACG AGAAGTGCGCCGCGTGCGGCC TGCCCAGCCCCTGCGGCACGACGTGCACGTACGCCAGCCCGCCGCCGCCCGACGTGCTGCCGACTCCGGTCTACTACCCGCCGCCGCCGCCCGTCTACTACCCCCCGCCGTCCCCGCCGCCGGTGGCCTACCCTCCGCCGACCACGCCGTCGACCAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACGCCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTACCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC TTTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTC                                                                                                                            ]
[+] EMBL OSS2989A             [                                                                                                AAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCNTCCTGCTCGTNATCATGCTCGTCGCCGCCACGGNCGCCG CGCCGACGTCGTCGTCCGnaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU198190             [                                                                                                  AGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCCTCCTGCTCGTCATCATGCTCGTCGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCGA CGACG AGAAGTGCGCCGCGTGCGGCC TGCCCAGCCCCTGCGGCACGACGTGCACGTACGCCAGCCCGCCGCCGCCCGACGTGCTGCCGACTCCGGTCTACTACCCGCCGCCGCCGCCCGTCTACTACCCCCCGCCGTCCCCGCCGCCGGTGGCCTACCCTCCGCCGACCACGCCGTCGACCAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CA755191             [                                                                                                               ACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCCTCCTGCTCGTCATCATGCTCGTCGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCGA CGACG AGAAGTGCGCCGCGTGCGGCC TGCCCAGCCCCTGCGGCACGACGTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU161813             [                                                                                                                 ACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCNTCCTGCTCGTNATCATGCTCGTNGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCNA GNNNGNAG AGTNCGCCGCGTGC GCC TGCCCAGCCCCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CB681890             [                                                                                                                                                                                                                                                                           GCCGCCGCCGCCGACGTCGTCGTCCGCGA CGACG AGAAGTGCGCCGCGTGCGGCC TGCCCAGCCCCTGCGGCACGACGTGCACGTACGCCAGCCCGCCGCCGCCCGACGTGCTGCCGACTCCGGTCTACTACCCGCCGCCGCCGCCCGTCTACTACCCCCCGCCGTCCCCGCCGCCGGTGGCCTACCCTCCGCCGACCACGCCGTCGACCAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACGCCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTACCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC TTTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATCGCATATATATGTCTAATCAA                 ]
[+] EMBL AU101371             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GCGGAGGTTACAACCCGACGCCGAGCTACAACCCGACGCCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTACCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTCTTTTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGAaaaaaa                                                       ]
[+] EMBL AU198191             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 GCTACAACCCGACGCCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTACCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCCCGGCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC TTTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTT                                                                                            ]
[+] EMBL AU095979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TACCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC TTTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAaaaaaa                                                         ]
[+] EMBL AU223020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         cCGGTGGTGCTCNCGNCGGCGGCGGTGGCCGGAGCCTTGGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC TTTTTTTTTTCGTTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATC CATATATATGTCTAATCAAATTTCAATTAAAAA   ]
[+] EMBL BM421248             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CATGTTCACGTTGTTGTTGTCGTCATCATCGTCGTCGGCAAATTAATTGTTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATC CATATATATGTCTAATCAAATTTCAATTAAAAA   ]


>consensus_15316#0 CCAATTCCAAAAGCGAAAGCAGAAGCCAACCATTATAACCACCCAAAATCGAATCCCCCA ACCAAAAAAGAAGCAACAAGAAGAAGAAGAGAGGAGAAAGTGAGAGTGCACACACACTAT AGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGA GCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCCTCCTG CTCGTCATCATGCTCGTCGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCGACGAC GAGAAGTGCGCCGCGTGCGGCCTGCCCAGCCCCTGCGGCACGACGTGCACGTACGCCAGC CCGCCGCCGCCCGACGTGCTGCCGACTCCGGTCTACTACCCGCCGCCGCCGCCCGTCTAC TACCCCCCGCCGTCCCCGCCGCCGGTGGCCTACCCTCCGCCGACCACGCCGTCGACCAAC TGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACG CCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTACCTC ACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGCGGGC GGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTTGGCC TTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTATGTG TTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTCTTTTTTTTTTCGTTTT TACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTGTTCT TGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTC TGTAATAATCCATATATATGTCTAATCAAATTTCAATTAAAAATGG



consensusID : consensus_15316#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 491
fasta sequence
                              [CAATGCGCACAGTCNCATACCCATCNACATGCCAGCACAGGGGTGACAGCATNTTTACCCCACACGCAAGGGATCCCCCAGGCTTTCNCAGGCNCCAACGCAGGCAGGCAGGGCAGGCACNCCAGCGTCTAGTGGCAGCACGCAGGTGGTGCATCTCGCAGGCAGGCAGGCAGGTGCGCCAGGACCCATTGGCCATTGTGATCTGGCAGACGTATGGTAATTAATTACANCGGCAGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTCATTTTTTTTTTCGTTTTTACAGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCNAAATTAATTGTTCATTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATCCATATATATGTCTAATCAAATTTCAATTAAAAAAAAAA]

[+] EMBL BI806106             [CAATGCGCACAGTCNCATACCCATCNACATGCCAGCACAGGGGTGACAGCATNTTTACCCCACACGCAAGGGATCCCCCAGGCTTTCNCAGGCNCCAACGCAGGCAGGCAGGGCAGGCACNCCAGCGTCTAGTGGCAGCACGCAGGTGGTGCATCTCGCAGGCAGGCAGGCAGGTGCGCCAGGACCCATTGGCCATTGTGATCTGGCAGACGTATGGTAATTAATTACANCGGCAGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTCATTTTTTTTTTCGTTTTTACAGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCNAAATTAATTGTTCATTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATCCATATATATGTCTAATCAAATTTCAATTAAAAAAAAAA]
[+] EMBL BM418724             [                                                                                                                                                                                                           ccGCGGACGCGTGG   GTAATTACA CGGC GTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTC TTTTTTTTTTCGTTTTTAC GGTTCATGTTCACGTTGTTGTTGTCGTCATCATCGTCGTCGGC AAATTAATTGTTC TTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATCCATATATATGTCTAATCAAATTTCAATTAAAAAAAAAA]


>consensus_15316#1 CAATGCGCACAGTCNCATACCCATCNACATGCCAGCACAGGGGTGACAGCATNTTTACCC CACACGCAAGGGATCCCCCAGGCTTTCNCAGGCNCCAACGCAGGCAGGCAGGGCAGGCAC NCCAGCGTCTAGTGGCAGCACGCAGGTGGTGCATCTCGCAGGCAGGCAGGCAGGTGCGCC AGGACCCATTGGCCATTGTGATCTGGCAGACGTATGGTAATTAATTACANCGGCAGTTTT TAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAAT CTCATTTTTTTTTTCGTTTTTACAGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGT CGTCGGCNAAATTAATTGTTCATTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGA TAGGAAAGATGTACATCAGACTCTGTAATAATCCATATATATGTCTAATCAAATTTCAAT TAAAAAAAAAA



consensusID : consensus_15316#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 389
fasta sequence
                              [AGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCNTCCTGCTCGTCGACCAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACGCCCGGTACAACCCGACGCCGTCGGGGTTGGTTCACGCCGCCGAACATTGCCNCCTACCTCACGNCGCCGGGGACGTCTTACCCGAAGGACCCCGCTTTCCGGCCCAACGCGGCGGCGGGCGCGCCNGTTCGTGGCGGGCGGTTGTGTTTTGCGGCGGCGGCGTTTGCCGA]

[+] EMBL C99479               [AGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCNTCCTGCTCGTCGACCAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACGCCCGGTACAACCCGACGCCGTCGGGGTTGGTTCACGCCGCCGAACATTGCCNCCTACCTCACGNCGCCGGGGACGTCTTACCCGAAGGACCCCGCTTTCCGGCCCAACGCGGCGGCGGGCGCGCCNGTTCGTGGCGGGCGGTTGTGTTTTGCGGCGGCGGCGTTTGCCGA]


>consensus_15316#2 AGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGA GCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGT GGCTACAGCTGCCGTGCAGCNTCCTGCTCGTCGACCAACTGCCCGCCGCCGCCGTACGGA GGCGGAGGCTACAACCCGACGCCGAGCTACAACCCGACGCCCGGTACAACCCGACGCCGT CGGGGTTGGTTCACGCCGCCGAACATTGCCNCCTACCTCACGNCGCCGGGGACGTCTTAC CCGAAGGACCCCGCTTTCCGGCCCAACGCGGCGGCGGGCGCGCCNGTTCGTGGCGGGCGG TTGTGTTTTGCGGCGGCGGCGTTTGCCGA



consensusID : consensus_15316#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 247
fasta sequence
                              [CCGCCCACGCGTCCGAAGANGAAGAAGAGAGGAGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGNTACAGCTGCCGTGCAGCTTCCTGCTCGTCATCATGCTCGTNGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGNNAGNGATGTAAGTGC]

[+] EMBL OSS11810A            [CCGCCCACGCGTCCGAAGANGAAGAAGAGAGGAGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGNTACAGCTGCCGTGCAGCTTCCTGCTCGTCATCATGCTCGTNGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGNNAGNGATGTAAGTGC]
[+] EMBL OSS10691A            [                      AGAAGAGAGGAGAAAGTNAGANTCCACACACACTATAGCATAGCACNACTCTTTTCTTCTNTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTNCCATCGATCTCTCGGCCATNGCACGGTGGCTACAGCTGCCGTGCAGNNTCCTGCTCGTCATCATCCTCGTNGnngtn                                             ]
[+] EMBL D43549               [                                AGAAAGTGAGAGTGCACACACACTATAGCATAGCACTACTC   TCTTNNNNAGGAGAGAGCACACAGTTCCAAGAAAAGCGCTGAGCTTCTTCCATCGATCTCTCGGCCATGGCAC                                                                                                  ]
[+] EMBL AU070632             [                                                   ACACTATAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGCTTCTTCCATCGATC                                                                                                                 ]


>consensus_15316#3 CCGCCCACGCGTCCGAAGANGAAGAAGAGAGGAGAAAGTGAGAGTGCACACACACTATAG CATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTGAGC TTCTTCCATCGATCTCTCGGCCATGGCACGGTGGNTACAGCTGCCGTGCAGCTTCCTGCT CGTCATCATGCTCGTNGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGNNAGNGATG TAAGTGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      CCAATTCCAAAAGCGAAAGCAGAAGCCAACCATTATAACCACCCAAAATCGAATCCCCCA 60
consensus_15316#1      ----------------------------------------------------------CA 2
                                                                                   

consensus_15316#2      ----------------------------------AGAAAG-TGAGAGTGCACACACACTA 25
consensus_15316#3      --CCGCCCACGCGTCCGAAGANGAAGAAGAGAGGAGAAAG-TGAGAGTGCACACACACTA 57
consensus_15316#0      ACCAAAAAAGAAGCAACAAGAAGAAGAAGAGAGGAGAAAG-TGAGAGTGCACACACACTA 119
consensus_15316#1      ATGCGCACAGTCNCATACCCATCNACATGCCAGCACAGGGGTGACAGCATNTTTACCCCA 62
                                                         * *  * *** **       ** * *

consensus_15316#2      TAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTG 85
consensus_15316#3      TAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTG 117
consensus_15316#0      TAGCATAGCACTACTCTCTTCTTCTTTAGGAGAGAGCACACAGTTCCAAGAAAAGCTCTG 179
consensus_15316#1      CACGCAAGGGATCCCCCAGGCTTTCNCAGGCNCCAACGCAGGCAGGCAGGGCAGGCACN- 121
                        *    **   * * *    ***    ***    * * **      ** *  * ** *  

consensus_15316#2      AGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCNTCCT 145
consensus_15316#3      AGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGNTACAGCTGCCGTGCAGCTTCCT 177
consensus_15316#0      AGCTTCTTCCATCGATCTCTCGGCCATGGCACGGTGGCTACAGCTGCCGTGCAGCCTCCT 239
consensus_15316#1      -CCAGCGTCTAGTGGCAGCACG--CAGG---TGGTGCATCTCGCAGGCAGGCAGGCAGGT 175
                         *  * ** *  *    * **  ** *    ****  *   ** * *  ****     *

consensus_15316#2      GCTCGTCGACCAACTGCCCGCCGCCGCCGT-ACGGAGGCGGAGGCTACAACCCG--ACGC 202
consensus_15316#3      GCTCGTCATCATGCTCGTNGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCG--NNAG 235
consensus_15316#0      GCTCGTCATCATGCTCGTCGCCGCCACGGCCGCCGCCGCCGACGTCGTCGTCCGCGACGA 299
consensus_15316#1      GCGCCAGGACCCATTGGCCATTGTGATC-TGGCAGACGT-ATGGTAATTAATTACANCGG 233
                       ** *     *    *       *         * *  *     *                

consensus_15316#2      CGAGCTACAACCCGACGCCCGGTACAACC-CGACGCCGTCGGGGTTGGTTCACGCCGCCG 261
consensus_15316#3      NGATGTAAGTGC------------------------------------------------ 247
consensus_15316#0      CGAGAAGTGCGCCG-CGTGCGGCCTGCCC-AGCCCCTGCGGCACGACGTGCACGTACGCC 357
consensus_15316#1      CAGTTTTTAATTCCCTTTATTATGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTA 293
                                                                                   

consensus_15316#2      AACATTGCCNCCTACCTCACGNCGCCGGGGACGTCTTACCCGAAGGACCCCGCTTTCCGG 321
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      AGCCCGCCGCCGCCCGACGTGCTGCCGACTCCGGTCTACTACCCGCCGCCGCCGCCCGTC 417
consensus_15316#1      AG-ATAATCTCATTTTTTTTTTCGTTTTTACAGGTTCATGTTCACGTTGTTGTTGTTGTC 352
                                                                                   

consensus_15316#2      CCCAACG-CGGCGGCGGGCGCGCCNGTTCGTGGCGGGCGGTTGTGTTTTGCGGCGGCGGC 380
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      TACTACC-CCCCGCCGTCCCCGCCGCCGGTGGCCTACCCTCCGCCGACCACGCCGTCGAC 476
consensus_15316#1      GTCATCGTCGTCGGCNAAATTAATTGTTCATTGTCA--TGTAATGTTTGTTGATCGATCC 410
                                                                                   

consensus_15316#2      -GTTTGCCGA-------------------------------------------------- 389
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      CAACTGCCCGCCGCCGCCGTACGGAGGCGGAGGCTACAACCCGACGCCGAGCTACAACCC 536
consensus_15316#1      CTTTTGGTGATAGGAAAGATGTACATCAGACTCTGTAATAATCCATATATATGTCTAATC 470
                                                                                   

consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      GACGCCCGGCTACAACCCGACGCCGTCGGGGTGGTTCACGCCGCCGAACATGCCGTCCTA 596
consensus_15316#1      AAATTTCAATTAAAAAAAAAA--------------------------------------- 491
                                                                                   

consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      CCTCACGCCGCCGGGGACGCTCTACCCGCAGGACCCCGGCTTCCGGCCCAACGCGGCGGC 656
consensus_15316#1      ------------------------------------------------------------
                                                                                   

consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      GGGCGGCGCCGCGTCGTGGCGCGCGGTGGTGCTCGCGGCGGCGGCGGTGGCCGGAGCCTT 716
consensus_15316#1      ------------------------------------------------------------
                                                                                   

consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      GGCCTTGTGATCGGCGACGTATGGTAATTAATTACACGGCGTTTTTAATTCCCTTTATTA 776
consensus_15316#1      ------------------------------------------------------------
                                                                                   

consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      TGTGTTCATAATAAGATTAGAGGAGATATATTCCGGTAAGATAATCTCTTTTTTTTTTCG 836
consensus_15316#1      ------------------------------------------------------------
                                                                                   

consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      TTTTTACGGTTCATGTTCACGTTGTTGTTGTTGTCGTCATCGTCGTCGGCAAATTAATTG 896
consensus_15316#1      ------------------------------------------------------------
                                                                                   

consensus_15316#2      ------------------------------------------------------------
consensus_15316#3      ------------------------------------------------------------
consensus_15316#0      TTCTTGTCATGTAATGTTTGTTGATCGATCCCTTTTGGTGATAGGAAAGATGTACATCAG 956
consensus_15316#1      ------------------------------------------------------------
                                                                                   

consensus_15316#2      --------------------------------------------------
consensus_15316#3      --------------------------------------------------
consensus_15316#0      ACTCTGTAATAATCCATATATATGTCTAATCAAATTTCAATTAAAAATGG 1006
consensus_15316#1      --------------------------------------------------
                                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)