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Oryza sativa
cluster # 15323 cluster # 15323       Sequences # 21       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15323#0 length = 980 sequences # 13  
consensus_15323#1 length = 485 sequences # 7  
consensus_15323#2 length = 299 sequences # 1  

consensusID : consensus_15323#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 980
fasta sequence
                              [TCACTCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCG-CACCANAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGGGGCGCGTCGTGGCGCGCACCGGGTGCGGCGGCGGCGGC-GGAC-TGGTGC-GGTGCGAGACCGG-GAACGCGCCGCCGGCGACGGTGGTGCAGCTGGTGGTGCACTCGCCGGAGGGGGCACAAGACCTGGCCGCGTACAGCGTGAGCTTGGTGGATGGGTTCAACGTCCCGGCGGTGGTGAGCCCGCAGGCCATCGCCGGCGGCGGGCAGTGCCCGGCGCTGGGGTGCGCGGCCGACCTGAACGCCGGGTGCCCGCGGTCGCAGCGCGTCGTCGGCGCCGGCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTA--GGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGACGTATTTTGTTTTTTATGTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CB647086             [TCACTCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCGCCACCA AGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGGGGCGCGTCGTGGCGCGCACCGGGTGCGGCGGCGGCGGC GGAC TGGTGC GGTGCGAGACCGG GAACGCGCCGCCGGCGACGGTGGTGCAGCTGGTGGTGCACTCGCCGGAGGGGGCACAAGACCTGGCCGCGTACAGCGTGAGCTTGGTGGATGGGTTCAACGTCCCGGCGGTGGTGAGCCCGCAGGCCATCGCCGGCGGCGGGCAGTGCCCGGCGCTGGGGTGCGCGGCCGACCTGAACGCCGGGTGCCCGCGGTCGCAGCGCGTCGTCGGCGCCGGCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTC                                                                                                                                                                                                                                                                      ]
[+] EMBL CB649509             [    TCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCGCCACCA AGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGGGGCGCGTCGTGGCGCGCACCGGGTGCGGCGGCGGCGGC GGAC TGGTGC GGTGCGAGACCGG GAACGCGCCGCCGGCGACGGTGGTGCAGCTGGTGGTGCACTCGCCGGAGGGGGCACAAGACCTGGCCGCGTACAGCGTGAGCTTGGTGGATGGGTTCAACGTCCCGGCGGTGGTGAGCCCGCAGGCCATCGCCGGCGGCGGGCAGTGCCCGGCGCTGGGGTGCGCGGCCGACCTGAACGCCGGGTGCCCGCGGTCGCAGCGCGTCGTCGGCGCCGGCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACATCGAGCCCGTGCCGCATCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGAGTGTGACGTCCTCGTCGTGCACACGTGGCGCGT                                                                                                                                                                                                                     ]
[+] EMBL OSC100161            [    TCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGNCGGCGGCGACGTCGNTGGCCGCCG CACCA AGCTGACGNTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGNCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGNGCGGCTCGACGNCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGNGGCGCGTTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL OSC111831            [    TCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTTGTCGCCGTCGTGGCGGNGGCGGCGACGTCGGTGGCCGCCG CACCANAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSC2405A             [    TCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTNGTCGCCGTCGTGGCGGNGGCGGCGACGTCGGTGGCCGCCGCCACCANAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTNTGGGTGGGGCGCGTCGTGGCGCGCACCGGGTGCGGNGGCGGCTAT GTAC TAGTTN GGTGCTAGAa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL AU069330             [     CCCTTGAAAAGCTAGACNCACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCG CACCAAAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAANACCGGCTTCCCTTCCATCTCCGGCAACANCGTGCGGNTCGACGGCGGCGGGNGCGGGCTCGTTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU068060             [     CCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCG CACCANAGCTGACGNTCCACAACCTNTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGCTCGTGTCGTACGANTTCCCGGCGAGCTTCTGGGCGTGGCGCGTTGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU067873             [        TTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTNGTCGCCGTCGTGGCGGNGGCGGCGACGTCGGTGGCCGCCGCCACCANAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGNTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGGCGGCGNGCGCGGGCTCGTNTCGTACGANTTCCCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL AU068063             [        TTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTCGTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCG CACCANAGCTGACGCTCCACAACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATCTCCGGCAACACCGCGCGGCTCGACGNCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGNGGCGCGTCGTGGCGCGGACCGGGTGGGGCGGCGNCGTCGGGACTTNGTGCGGGTGCGAGACCGGNGAACGCGTCGC  GCGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB647087             [                                                                                                                                                                                                                     GCGCGGGCTCGTGTCGTACGACTTCCCGGCGAGCTTCTGGGCGGGGCGCGTCGTGGCGCGCACCGGGTGCGGCGGCGGCGGC GGAC TGGTGC GGTGCGAGACCGG GAACGCGCCGCCGGCGACGGTGGTGCAGCTGGTGGTGCACTCGCCGGAGGGGGCACAAGACCTGGCCGCGTACAGCGTGAGCTTGGTGGATGGGTTCAACGTCCCGGCGGTGGTGAGCCCGCAGGCCATCGCCGGCGGCGGGCAGTGCCCGGCGCTGGGGTGCGCGGCCGACCTGAACGCCGGGTGCCCGCGGTCGCAGCGCGTCGTCGGCGCCGGCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTTTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTA  GGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGACGTATTTTGTTTTTTATGTAAGAAAAAA                          ]
[+] EMBL CF313834             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   AGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTAGGGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCT                                                          ]
[-] EMBL CF313835             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTA  GGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGACGTATTTTGTTTTTTATGTAAGAAAAAAA                         ]
[+] EMBL CF329533             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         GTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGACGTATTTTGTTTTTTATGTAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15323#0 TCACTCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTC GTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCGCACCANAGCTGACGCTCCAC AACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATC TCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCG GCGAGCTTCTGGGCGGGGCGCGTCGTGGCGCGCACCGGGTGCGGCGGCGGCGGCGGACTG GTGCGGTGCGAGACCGGGAACGCGCCGCCGGCGACGGTGGTGCAGCTGGTGGTGCACTCG CCGGAGGGGGCACAAGACCTGGCCGCGTACAGCGTGAGCTTGGTGGATGGGTTCAACGTC CCGGCGGTGGTGAGCCCGCAGGCCATCGCCGGCGGCGGGCAGTGCCCGGCGCTGGGGTGC GCGGCCGACCTGAACGCCGGGTGCCCGCGGTCGCAGCGCGTCGTCGGCGCCGGCGGCGCC GTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACG ACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTC GTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTC GCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGC CACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTAGGGGGGAATAATAATGACAGTGCGT ATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTAT TAGTGTTGTACGTGTACAATCTACGACGTATTTTGTTTTTTATGTAAGAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15323#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 485
fasta sequence
                              [GCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTANAAGTGGGTAGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGAC-GTATTTTGTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTATTGCCA---AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU166416             [GCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTANAAGTGGGTAGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGAC GTATTTTGTTTTTTATGTAAGAAAAAAAAATGCTTTGAaaaaaa                                                 ]
[+] EMBL AU181328             [             GGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTANCTGTGTGTAGAAGTGGGTAGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGACGGTATTTTGTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTA     A   AAAAAAAA                            ]
[+] EMBL AU181321             [                       GGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTANCTGTGTGTAAAAGTGGGTAGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGAC GTATTTTGTTTTTTATGTAA NAAAAAAAATGCTTTGATGTGTTTTTATTGCCA   AAAAAAAAAAAAAAA                     ]
[+] EMBL AU181271             [                                 ACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTANAAGTGGGTAGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGAC GTATTTTGTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTATTGCCA   AAAAAAAAAA                          ]
[+] EMBL AU181165             [                                          AGGCGCGGTGCCCGCTGACGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTAGGGGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGAC GTATTTTGTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTATTGCCA   AAAAAAAA                            ]
[+] EMBL CF315591             [                                                                                                                                                                                                                                                                                             GGGGAATAATAATGACAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGAC GTATTTTGTTTTTTATGT                                                                           ]
[+] EMBL AU093695             [                                                                                                                                                                                                                                                                                                                                                                   CACAGTCTGGTATTAGTGTTGTACGTGTACAATCTACGAC GTATTTTGTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTATTGCCACGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15323#1 GCGGCGCCGTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGA CGAGGACGACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGC TCAAGGTCGTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCA CCGTCGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCT GCGTGCGCCACGTGTACGGACTAGCTGTGTGTANAAGTGGGTAGGGGGGAATAATAATGA CAGTGCGTATACACGTATGTGTACACCGTATGTCGACTGTACGCGTACGGACGGGCACAG TCTGGTATTAGTGTTGTACGTGTACAATCTACGACGTATTTTGTTTTTTATGTAAGAAAA AAAAATGCTTTGATGTGTTTTTATTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAA



consensusID : consensus_15323#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence
                              [AGNTCATCCGCCCCGTTGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCCACGTGTNCGGACTAGCTGTGTGTAAAAGTGGGTAGGGGGGAATAATAATGACCAGTGNGGTATACACCGTATGTGTACNCCCGTATTGTCGACTGTACGCGTACGGGCCGGGCACAAGTCTGGTATTAGTGTTTGTACGTGTCCAATCTACCGACGTATTTTGTTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTAAAAAAAAAAAAAA]

[+] EMBL AU173117             [AGNTCATCCGCCCCGTTGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGCCCACGTGTNCGGACTAGCTGTGTGTAAAAGTGGGTAGGGGGGAATAATAATGACCAGTGNGGTATACACCGTATGTGTACNCCCGTATTGTCGACTGTACGCGTACGGGCCGGGCACAAGTCTGGTATTAGTGTTTGTACGTGTCCAATCTACCGACGTATTTTGTTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTAAAAAAAAAAAAAA]


>consensus_15323#2 AGNTCATCCGCCCCGTTGTCGCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACAC GTGGCGCGTCCTGCGTGCGCCCACGTGTNCGGACTAGCTGTGTGTAAAAGTGGGTAGGGG GGAATAATAATGACCAGTGNGGTATACACCGTATGTGTACNCCCGTATTGTCGACTGTAC GCGTACGGGCCGGGCACAAGTCTGGTATTAGTGTTTGTACGTGTCCAATCTACCGACGTA TTTTGTTTTTTTATGTAAGAAAAAAAAATGCTTTGATGTGTTTTTAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      TCACTCCCTTGAAAAGCTAGACACACACACATGGCCAAGCAGCTCGCCCTCGTTCTCCTC 60
                                                                                   

consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      GTCGCCGTCGTGGCGGCGGCGGCGACGTCGGTGGCCGCCGCACCANAGCTGACGCTCCAC 120
                                                                                   

consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      AACCTGTGCCCGTACCCGGTGTGGCCGCTGGTGACGCCCAACACCGGCTTCCCTTCCATC 180
                                                                                   

consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      TCCGGCAACACCGCGCGGCTCGACGGCGGCGGGCGCGGGCTCGTGTCGTACGACTTCCCG 240
                                                                                   

consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      GCGAGCTTCTGGGCGGGGCGCGTCGTGGCGCGCACCGGGTGCGGCGGCGGCGGCGGACTG 300
                                                                                   

consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      GTGCGGTGCGAGACCGGGAACGCGCCGCCGGCGACGGTGGTGCAGCTGGTGGTGCACTCG 360
                                                                                   

consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      CCGGAGGGGGCACAAGACCTGGCCGCGTACAGCGTGAGCTTGGTGGATGGGTTCAACGTC 420
                                                                                   

consensus_15323#1      ------------------------------------------------------------
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      CCGGCGGTGGTGAGCCCGCAGGCCATCGCCGGCGGCGGGCAGTGCCCGGCGCTGGGGTGC 480
                                                                                   

consensus_15323#1      ----------------------------------------------------GCGGCGCC 8
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      GCGGCCGACCTGAACGCCGGGTGCCCGCGGTCGCAGCGCGTCGTCGGCGCCGGCGGCGCC 540
                                                                                   

consensus_15323#1      GTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACG 68
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      GTCGTGGCGTGCCGGGGCACGGCGGACTACTTCAAGGCGCGGTGCCCGCTGACGAGGACG 600
                                                                                   

consensus_15323#1      ACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTC 128
consensus_15323#2      ------------------------------------------------------------
consensus_15323#0      ACGGGGAGCGACGTCGAGCCCGTGCCGCAGCACTGCCTCGCCCCCGGCGAGCTCAAGGTC 660
                                                                                   

consensus_15323#1      GTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTC 188
consensus_15323#2      ----------------------------------------AGNTCATCCGCCCCGTTGTC 20
consensus_15323#0      GTCTTCTGCCAGCCGTCCATGGTCGCCGCCGCCGTGCCGGAGCTCATCCGCACCGTCGTC 720
                                                               ** ******** **** ***

consensus_15323#1      GCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGC 248
consensus_15323#2      GCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGC 80
consensus_15323#0      GCCAACATCTAGCTGTGTGTGAGGTCCTCGTCGTGCACACGTGGCGCGTCCTGCGTGCGC 780
                       ************************************************************

consensus_15323#1      C-ACGTGTACGGACTAGCTGTGTGTANAAGTGGGTAGGGGGGAATAATAATGAC-AGTGC 306
consensus_15323#2      CCACGTGTNCGGACTAGCTGTGTGTAAAAGTGGGTAGGGGGGAATAATAATGACCAGTGN 140
consensus_15323#0      C-ACGTGTACGGACTAGCTGTGTGTAGAAGTGGGTAGGGGGGAATAATAATGAC-AGTGC 838
                       * ****** ***************** *************************** **** 

consensus_15323#1      G-TATACAC-GTATGTGTACACC-GTAT-GTCGACTGTACGCGTACGGAC-GGGCACA-G 360
consensus_15323#2      GGTATACACCGTATGTGTACNCCCGTATTGTCGACTGTACGCGTACGGGCCGGGCACAAG 200
consensus_15323#0      G-TATACAC-GTATGTGTACACC-GTAT-GTCGACTGTACGCGTACGGAC-GGGCACA-G 892
                       * ******* ********** ** **** ******************* * ******* *

consensus_15323#1      TCTGGTATTAGTGTT-GTACGTGTACAATCTAC-GACGTATTTTGTTTTTT-ATGTAAGA 417
consensus_15323#2      TCTGGTATTAGTGTTTGTACGTGTCCAATCTACCGACGTATTTTGTTTTTTTATGTAAGA 260
consensus_15323#0      TCTGGTATTAGTGTT-GTACGTGTACAATCTAC-GACGTATTTTGTTTTTT-ATGTAAGA 949
                       *************** ******** ******** ***************** ********

consensus_15323#1      AAAAAAAATGCTTTGATGTGTTTTTATTGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 477
consensus_15323#2      AAAAAAAATGCTTTGATGTGTTTTTA-----AAAAAAAAAAAAA---------------- 299
consensus_15323#0      AAAAAAAAAAAAAAAAAA-------------AAAAAAAAAAAAA---------------- 980
                       ********       *               *************                

consensus_15323#1      AAAAAAAA 485
consensus_15323#2      --------
consensus_15323#0      --------
                               




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)