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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15324#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 687 fasta sequence
[TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTT-GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC-AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG]
[+] EMBL CB681494 [TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGACCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAAACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG]
[+] EMBL CB680893 [ AAGTGGCAGTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATG ]
[-] EMBL CB681493 [ TGGCAGTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGAAAGGGCTGC ]
[-] EMBL AK067196 [ GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCT ]
[-] EMBL CB682830 [ GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTA ]
[-] EMBL CB680892 [ GTCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGCAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCAGGGGCCCGC ]
[-] EMBL CF326374 [ TCTTACACGATCTGATCATTACTT GCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTT ]
[-] EMBL CA753065 [ caTACTTGGCCACAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGACCGCATGTGATTGTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAATACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTG ]
[+] EMBL CD645586 [ ATGATACATAAGTTTTGCTCCAT AAAAAAGGACCGATTAGAACGCATGTGACTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACC AAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACA ]
[-] EMBL BE229391 [ TGCCCCATAAAAAAAGGACCGATTAGAACGCATMTGATTTTCACGAGGAAAACCACTTGATTCGTWTGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATARTGGACCDAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCMTGATCTGGTCGGAGATGAGACGATGACCCSC GCGGCGGCC GSCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGAAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGC CGGCCGCGGCGGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCAAGCGCACGCAGCGTCGCC GGAGCTCCCACCTTGTCTCGCGCCCGCTGCTC ]
consensusID : consensus_15324#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence
[TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGA-CCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTANTAGNAAANANANATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCGCTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANATCTCTTTGGCCATTCNGGGGGGCAATN]
[-] EMBL CA753989 [TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGA CCAAAAACACCATAAGAAATTAAAGAGAACGGA ]
[-] EMBL AA754596 [ ACTTGATTNGTATGTACAGAAANACGGTGGAAACCCNTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATATTGGACCCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTANTAGNAAANANANATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCGCTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGCGTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANATCTCTTTGGCCATTCNGGGGGGCAATN]
consensusID : consensus_15324#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 514 fasta sequence
[CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC-GCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCCCAAGTTCCC]
[-] EMBL BI306468 [CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTG ]
[-] EMBL BI305957 [ AAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTGGCCGCGGCCCCAAG ]
[-] EMBL BI305597 [ AAGTGGCAGTCTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGTG ]
[-] EMBL CB965524 [ CTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCCGGCGT GCCGCGGCCCAGTATTCCC]
[-] EMBL BU673719 [ CTTACACGATCTGATCATTACTTGCCCCAAACTCAAGGCTAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATTGTTAAAGGACCGATTAGTACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACC TGTCCGCCTTGCCGCCGCCGTCCGCCGCGGCGCCGCCCCGCCGTTGC ]
[-] EMBL BI305435 [ CCAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAGTGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCAATCAGCCAGCTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGACGATGACCCGCCGGCGCGGCGGAGGCCCATCGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCGCCGCCGTCCGCCGC GCGCCGCCCCGCCGTTGCCGCC ]
consensusID : consensus_15324#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 475 fasta sequence
[TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCCCAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCTTGTAGATGACCCGGCAAACAAGCATCATCAGTGCATGGATANTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCATCAGCCAGNTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGANGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATNGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCGCCTTGCCGCCGCTCGTGCNGAATCNTGCN]
[-] EMBL BE228969 [TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCCCAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGCTCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTCGTATGTACAGAAAAACGGTGGAAACCCTTGTAGATGACCCGGCAAACAAGCATCATCAGTGCATGGATANTGGACCAAAAACACCATAAGAAATTAAAGAGAACGGAGCAAGCGAGCATCAGCCAGNTAGTACTAGTACATATATATTGTACAGCCGTGATCTGGTCGGAGATGAGANGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCGGAGGCCCATNGATCGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCGCCTTGCCGCCGCTCGTGCNGAATCNTGCN]
consensusID : consensus_15324#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 389 fasta sequence
[CAGCTAGTAGTAGTAGATATATATTGTAGAGCWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGCGCGGAGGCKCATNGATCGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCCGCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCGGCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGTCGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAGCTCG]
[-] EMBL BE229555 [CAGCTAGTAGTAGTAGATATATATTGTAGAGCWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGCGCGGAGGCKCATNGATCGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCCGCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCGGCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGTCGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAGCTCG]
consensusID : consensus_15324#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 240 fasta sequence
[CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATGCTGGGTGCAGGAGATGAGACGATGGACCCAGCCAGGCGCGGCGGAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTGCCGCGGCCCAAGCTTATTCCCTGTTGA]
[-] EMBL CB965898 [CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATGCTGGGTGCAGGAGATGAGACGATGGACCCAGCCAGGCGCGGCGGAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCGCCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTGCCGCGGCCCAAGCTTATTCCCTGTTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15324#2 --------------CAAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCC 46
consensus_15324#3 ---TTTTTTTTACCCAAAATTAAAAGTGGCAGTCTTACACGATNTGATCATTACTTGCCC 57
consensus_15324#1 --------TTTTTTTTTTTTTTTTTTTGGCAGTCTTACACGATCTGATCATTACTTGCCC 52
consensus_15324#5 ------------------------------------------------------------
consensus_15324#0 TCTTTTTAGGTTTTTTAAATTAAAAGTGGCAGTCTTACACGATCTGATCATTACTTGCCC 60
consensus_15324#4 ------------------------------------------------------------
consensus_15324#2 CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 106
consensus_15324#3 CAAANTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 117
consensus_15324#1 CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 112
consensus_15324#5 ------------------------------------------------------------
consensus_15324#0 CAAACTCAAGGCAAAAGTTTACAAGGTAGTAGTACATGATTGATGATACATAAGTTTTGC 120
consensus_15324#4 ------------------------------------------------------------
consensus_15324#2 TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 166
consensus_15324#3 TCCATAAAAAAAGGACNGATTAGNACGCATGTGATTTTCANGAGGAAAACCACTTGATTC 177
consensus_15324#1 TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 172
consensus_15324#5 ------------------------------------------------------------
consensus_15324#0 TCCATAAAAAAAGGACCGATTAGAACGCATGTGATTTTCACGAGGAAAACCACTTGATTC 180
consensus_15324#4 ------------------------------------------------------------
consensus_15324#2 GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 226
consensus_15324#3 GTATGTACAGAAAAACGGTGGAAACCCTTGTAGA-TGACCCGGCAAACAAGCATCATCAG 236
consensus_15324#1 GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 232
consensus_15324#5 ------------------------------------------------------------
consensus_15324#0 GTATGTACAGAAAAACGGTGGAAACCCCTGTAGACTGACCCGGCAAACAAGCATCATCAG 240
consensus_15324#4 ------------------------------------------------------------
consensus_15324#2 TGCATGGATACTGGACCAAAAACACCATAAGCCATAGGCAAAAACACCATAAGAAATTAA 286
consensus_15324#3 TGCATGGATANTGGACCAAAAACACCATAAG----------------------AAATTAA 274
consensus_15324#1 TGCATGGATACTGGACCAAAAACACCATAAG----------------------AAATTAA 270
consensus_15324#5 ------------------------------------------------------------
consensus_15324#0 TGCATGGATACTGGACCAAAAACACCATAAG----------------------AAATTAA 278
consensus_15324#4 ------------------------------------------------------------
consensus_15324#2 AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTACTAGTACAT-ATATATTGTACAG 344
consensus_15324#3 AGAGAACGGAGCAAGC-GAGCA-TCAGCCAGNTAGTACTAGTACAT-ATATATTGTACAG 331
consensus_15324#1 AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTANTAGNAAAN-ANANATTGTACAG 328
consensus_15324#5 CAAATGCAAGCCAAGCTGAGTGACTGAGTACATGATGATGATTGGTGACATGCCGTGATG 60
consensus_15324#0 AGAGAACGGAGCAAGC-GAGCAATCAGCCAGCTAGTACTAGTACAT-ATATATTGTACAG 336
consensus_15324#4 ----------------------------CAGCTAGTAGTAGTAGAT-ATATATTGTAGAG 31
* * * * * * ** *
consensus_15324#2 C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCG--------------CGGCG 388
consensus_15324#3 C-CGTGATCTGGTCGGAGATGAGA-NGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 389
consensus_15324#1 C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 386
consensus_15324#5 C-TGGGT----GCAGGAGATGAGA-CGATGGAC--CCAGCCA---------GGCGCGGCG 103
consensus_15324#0 C-CGTGATCTGGTCGGAGATGAGA-CGATGACCCGCCGGCGGCGGCCGGCCGGCGCGGCG 394
consensus_15324#4 CWCGTGATTTGGTCGGAGATGAGATCGATGATCTCGCGGCGGCGGCCGGCTGGC---GCG 88
* * * * ********** **** * * ** ***
consensus_15324#2 GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 445
consensus_15324#3 GAGGCCCATN--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGNATCACCTTGTCCG 446
consensus_15324#1 GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACNTTGTCCG 443
consensus_15324#5 GAGGCCCATGCAGATGCGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 163
consensus_15324#0 GAGGCCCATC--GAT-CGATCACTTGGGCCCCCAAAGCAGCAGGTGCATCACCTTGTCCG 451
consensus_15324#4 GAGGCKCATN--GAT-CGATCACTTGGGGCGSCAAAGCAGAAGGTGTATCAACDTTGTCC 145
***** *** *** ************ * ******** ***** **** * *
consensus_15324#2 CCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 501
consensus_15324#3 CCTTGCCGCCGCT-CGTGCNGAATCNTGCN------------------------------ 475
consensus_15324#1 CTTTGCCGCCGCNGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 499
consensus_15324#5 CCTTGCCACCACCGTCCACCGCGCACCGCCCCGCCGTTGCCGCCGGCGTG-----CCGCG 218
consensus_15324#0 CCTTGCCGCCGCCGTCCGCCGCGCGCCGCCCCGCCGTTGCCGCCGGCGTGG----CCGCG 507
consensus_15324#4 GCTTGTCGCCGCCGTGCGCCGCGCGCCGCCCCGCCGTTGCCGCCGCCGTGGCCGGCCGCG 205
*** * ** * * * **
consensus_15324#2 GCCCCAAGTTCCC----------------------------------------------- 514
consensus_15324#3 ------------------------------------------------------------
consensus_15324#1 GCCGCGGCCGCGCGGGGNACCCGCAGTTGNTGGCCGGCGTCGCGCGCCAGCGCACGCAGC 559
consensus_15324#5 GCCCAAGCTTATTCCCTGTTGA-------------------------------------- 240
consensus_15324#0 GCCGCGGCCGCGCGGGGTACCCGCAGCTGCTGGCCGGCGTCGCGCGCCAGCGCACGCAGC 567
consensus_15324#4 GCCGCGCGGGGTACCCCGCAGCTGCTGGGCCGGCGTGCGCGCGCACAGKGCACGCAGCGT 265
consensus_15324#2 ------------------------------------------------------------
consensus_15324#3 ------------------------------------------------------------
consensus_15324#1 GTCGCCGGGAGTTCCCACGTGTTCTCGCGCCNGCTGNTCATGGCGAATCAACCACCGANA 619
consensus_15324#5 ------------------------------------------------------------
consensus_15324#0 GTCGCCGGGAGCTCCCACCTGCTCTCGCGCCCGCTGCTCATGGCGAATCAACCACCGCTT 627
consensus_15324#4 CGCCGGGAGCTCCCACCTGTTCTCGCGCCCGCTGCTCATGGCGAATCAACCACNGCTTTC 325
consensus_15324#2 ------------------------------------------------------------
consensus_15324#3 ------------------------------------------------------------
consensus_15324#1 TCTCTTTGGCCATTCNGGGGGGCAATN--------------------------------- 646
consensus_15324#5 ------------------------------------------------------------
consensus_15324#0 TCTCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTCATCCTCACCTCGTGCCG 687
consensus_15324#4 TCCTTGGCCCTTCTTGCTATGCTATCTAGCTCGTGCTGCTTCTCTGCCGAATTGGACGAG 385
consensus_15324#2 ----
consensus_15324#3 ----
consensus_15324#1 ----
consensus_15324#5 ----
consensus_15324#0 ----
consensus_15324#4 CTCG 389
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||