Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15335 cluster # 15335       Sequences # 21       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15335#0 length = 1766 sequences # 20  
consensus_15335#1 length = 332 sequences # 1  

consensusID : consensus_15335#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 20
consensus length = 1766
fasta sequence
                              [GCAAAAGATTTAAACCTTTTTCCTTTACGAAAGACGCATACGCACGCGCACCGCTATGTACATGCACCACGCGTTAATACCCACGTATTCAGAGAGACGGAAACCAACGGCAAATACTTGGTCTCACTAGAATTTAACTTACCTAATTGTTTGATTGAAATTAATGTACTCTTGAATGGATAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCATCTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC-GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG-TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA-GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG-CCGAGCTCCACGATGACGTC-GGGCC-GCACCTCCTCGATCAGCTCCGCGAACACCGC-GCCGGTCGAGCCCCACCC-GCGCGGCCTCGCCGCAG-CCGGGTGCAGC-AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTC-GTACGGGCTCTCCCCGTCG-AACAGCTTGTCG-AGGAGCGTCC-GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC-GTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG-GTGCGCGGCGCGCGGCCGTA-T-GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACCTATATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAGATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTAGTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATACTATTAGATATAAACTATACTAGTAAAAA]

[+] EMBL CB654120             [GCAAAAGATTTAAACCTTTTTCCTTTACGAAAGACGCATACGCACGCGCACCGCTATGTACATGCACCACGCGTTAATACCCACGTATTCAGAGAGACGGAAACCAACGGCAAATACTTGGTCTCACTAGAATTTAACTTACCTAATTGTTTGATTGAAATTAATGTACTCTTGAATGGATAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCATCTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAAAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL AU222982             [                                                                                                                                                                          ttttttTGGATAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCATCTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AK072714             [                                                                                                                                                                                                                                                       CCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG CCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCGAACACCGC GCCGGTCGAGCCCCACCC GCGCGGCCTCGCCGCAG CCGGGTGCAGC AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTC GTACGGGCTCTCCCCGTCG AACAGCTTGTCG AGGAGCGTCC GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTC                                                                                                                                                                                                                                            ]
[-] EMBL AU182397             [                                                                                                                                                                                                                                                      tttttttTACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU181911             [                                                                                                                                                                                                                                                         ttttTACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAANAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGNGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL AU223116             [                                                                                                                                                                                                                                                             ttttTTTTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGNGGTCGTTNGGCGGCGGTGAAGTAGTCGTGNCCGAACATGACNCCCCCGGGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL AU108456             [                                                                                                                                                                                                                                                             ttttTTTTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTC CCGAGTGCGTGGCCCCGCCGGCGA   CGAGCTTTTCGCCGGCGAGGAGTCACCGGCCAGTCGCGGCGGA CGGCGGCTTCGGGGANAGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB645774             [                                                                                                                                                                                                                                                                                      GTGTATGAATTTGGT CCCTTTAACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CF325906             [                                                                                                                                                                                                                                                                                                   GTATAAATTCCCAGTCCAAAGTAGAAGACCCAAATTCTTGAATTGATTCTTGTGTAAGAATGAAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCCCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGAAGTCACCGCCC GTCCCGGCGAACCGCCGGTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK111425             [                                                                                                                                                                                                                                                                                                                                                                 GAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG CCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCGAACACCGC GCCGGTCGAGCCCCACCC GCGCGGCCTCGCCGCAG CCGGGTGCAGC AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTC GTACGGGCTCTCCCCGTCG AACAGCTTGTCG AGGAGCGTCC GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGAGCGCGGGCAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACCTATATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAGATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTAGTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATAC                            ]
[+] EMBL OSS14437A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               nctacGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAG GGTCGCGGAACG CGNCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGNCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG NCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCGAACACCGC GTCGGTCGAGCCCCACCC GCGCGGNCTCG CGAAGCCCGGGTGCAAC AGCGCGGCGGTGTGCGGCGNCGTGAAGt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL OSS15125A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                natgaCAGCACGCNCATCGCCGTGGCGCGGC GCGGGACGTCGCGGCGGAAG GGTCGCGGAACG CGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCAAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG CCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCNAACACCGC GCCGGTCGAGCCCCACCC GCGCGGCCTCGCCG AG CCGGGTGCAGC AGCGCGGCGGTNTNCGGCGGCGGGAAGCTCTC GTACGGGCTCTTCCCGTCG AACAGCTTTTNG AGGAGCGTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL AU222975             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             CAGCGCNGACGCGCCCAGGAAGGCGCCCGAGCTCCACGATGACGTCAGGGCCTGCACCTCCTCGATCAGCTCCGCGAACACCGCTGCCGGTCGAGCCCCACCCTGCGCGGCCTCGCCGCAG CCGGGTGCAGC AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTCAGTACGGGCTCTCCCCGTCG AACAGCTTGTCG AGGAGCGTCCAGCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATCAGTGCGGCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL OSS13164A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CGATCA CTNC CGAACA CNC GCCGGTC AACCCCACCC NC CGGCCTCGCCGAAN CC GGTTCAACAACCCCGGCGTTGT CGGCGCCGGNAAGCTCTC GTAC GGCTCTCCNCGTCG AACAGCTTGTCG AGGAACGTCC GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGNCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAGNGTGC CGGCGCGCGGCCGTANT GNAC NCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGAT                                                                                                                                                                                                                                                                ]
[-] EMBL OSS13765A            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        nGGCCTCGCCG AA CC GGTTCAAC AACCCGGC GTTTTCGGCNGCGGGAAACTCTC NTACGGGCTCTCCCCGTCGAAANATCTTGTCGAAGGATCGTCC GCACGACGGCGTCGCTGGTTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGACCGCGGGTAGTTCGCCNTCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGCCGGTGCCGGAGAG GTNC CGCCGCGCGGCCGTA TGGACC TCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTT                                                                                                                                                                                                                                                           ]
[-] EMBL OSS3979A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  C GTACGGNTTCTCCCCGTCG AACAGCTTGTCG AGGANCGTCC GCACGACGCCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCNCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTNC CGGCGCGCGGCCGTA TNGNAC  CTGCGACGGCTTGCTNGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAANACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTT                                                                                                                                                                                                                                                           ]
[-] EMBL AU222981             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ACTCCTCCCTGAACCGGAACAGATC GTNCGNCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGG                                                                                                                                                                                                                                                                               ]
[-] EMBL CB645773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCGCGGGTAGTTAGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTACGGGATCA                                                                                                                                                                                                                                                              ]
[+] EMBL AU174075             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACC  TATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAGATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTAGTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATACTATTAGATATAAACTATACTAGTAAAAA]
[-] EMBL OSS3840A             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        tatggancCTGCGACGNCTTGCTCGCAGGCGGNCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAANACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGNCGGAGCCTCGCCGGAACGCCGNCGGAAGNCGCCGNCGCCGGAGACGGACNCGNCTTCATGATCACTT                                                                                                                                                                                                                                                           ]


>consensus_15335#0 GCAAAAGATTTAAACCTTTTTCCTTTACGAAAGACGCATACGCACGCGCACCGCTATGTA CATGCACCACGCGTTAATACCCACGTATTCAGAGAGACGGAAACCAACGGCAAATACTTG GTCTCACTAGAATTTAACTTACCTAATTGTTTGATTGAAATTAATGTACTCTTGAATGGA TAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCAT CTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATT CACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTT GAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACG TCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGC CGTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGG TGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCGTCGGCGG CGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGT TGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGT AGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCA CCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCC AGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGG CCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCGCCGAGCTCCACGATGACGTCGGGCC GCACCTCCTCGATCAGCTCCGCGAACACCGCGCCGGTCGAGCCCCACCCGCGCGGCCTCG CCGCAGCCGGGTGCAGCAGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTCGTACGGGCTCT CCCCGTCGAACAGCTTGTCGAGGAGCGTCCGCACGACGGCGTCGCTGGGTATCGCCTCGC CACACTCCTCCCTGAACCGGAACAGATCGTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCG CCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAGGTGCG CGGCGCGCGGCCGTATGACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACG ACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGA GGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCG GCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACC TATATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAG ATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTA GTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATACTA TTAGATATAAACTATACTAGTAAAAA



consensusID : consensus_15335#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 332
fasta sequence
                              [CCGGCGCTGTCGGCGGCGGAACTCTCGTACGGCTCTCCACGTCGAACAACTTGTCGAGGACGTCGCACACGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATCGTTCGACGTCGAGCGCGGGTAGTTCGCCGNCGACGCAGCGCTGNCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGNCGGAGAGGTCCGGCGCGCGGGCGTATTGNACCTGCGTCGNCTTGCTCGCAGTCGATCGGATGGNCGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGTAGG]

[-] EMBL OSS12040A            [CCGGCGCTGTCGGCGGCGGAACTCTCGTACGGCTCTCCACGTCGAACAACTTGTCGAGGACGTCGCACACGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATCGTTCGACGTCGAGCGCGGGTAGTTCGCCGNCGACGCAGCGCTGNCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGNCGGAGAGGTCCGGCGCGCGGGCGTATTGNACCTGCGTCGNCTTGCTCGCAGTCGATCGGATGGNCGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGTAGG]


>consensus_15335#1 CCGGCGCTGTCGGCGGCGGAACTCTCGTACGGCTCTCCACGTCGAACAACTTGTCGAGGA CGTCGCACACGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTTCGACGTCGAGCGCGGGTAGTTCGCCGNCGACGCAGCGCTGNCGTTGCTCGCCGGGAC ATCCGTGGAGGAGGCGGTGNCGGAGAGGTCCGGCGCGCGGGCGTATTGNACCTGCGTCGN CTTGCTCGCAGTCGATCGGATGGNCGACGACATGATGCCAACCGAGTACCCGGCGGAGAA GACGATCAGGAACACGGTGAGCCGGGTGTAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15335#0      GCAAAAGATTTAAACCTTTTTCCTTTACGAAAGACGCATACGCACGCGCACCGCTATGTA 60
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CATGCACCACGCGTTAATACCCACGTATTCAGAGAGACGGAAACCAACGGCAAATACTTG 120
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      GTCTCACTAGAATTTAACTTACCTAATTGTTTGATTGAAATTAATGTACTCTTGAATGGA 180
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      TAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCAT 240
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATT 300
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTT 360
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      GAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACG 420
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      TCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGC 480
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CGTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGG 540
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      TGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCGTCGGCGG 600
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGT 660
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      TGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGT 720
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      AGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCA 780
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA 840
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCC 900
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      AGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGG 960
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCGCCGAGCTCCACGATGACGTCGGGCC 1020
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      GCACCTCCTCGATCAGCTCCGCGAACACCGCGCCGGTCGAGCCCCACCCGCGCGGCCTCG 1080
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      CCGCAGCCGGGTGCAGCAGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTCGTACGGGCTCT 1140
consensus_15335#1      --------------------CCGGCGCTGT-CGGCGGCGG--AACTCTCGTACGG-CTCT 36
                                            ***** *** *********  * *********** ****

consensus_15335#0      CCCCGTCGAACAGCTTGTCGAGGAGCGTCCGCACGACGGCGTCGCTGGGTATCGCCTCGC 1200
consensus_15335#1      CCACGTCGAACAACTTGTCGAGGA-CGTC-GCACAC--GCGTCGCTGGGTATCGCCTCGC 92
                       ** ********* *********** **** ****    **********************

consensus_15335#0      CACACTCCTCCCTGAACCGGAACAGATCGTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCG 1260
consensus_15335#1      CACACTCCTCCCTGAACCGGAACAGATCGTTCGACGTCGAGCGCGGGTAGTTCGCCGNCG 152
                       ****************************** ** ** ******************** **

consensus_15335#0      CCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAGGTGCG 1320
consensus_15335#1      ACGCAGCGCTGNCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGNCGGAGAGGTCCG 212
                        ********** *********************************** ********* **

consensus_15335#0      CGGCGCGCGGCCGTATGACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACG 1380
consensus_15335#1      --GCGCGCGGGCGTATTGN-ACCTGCGTCGNCTTGCTCGCAGTCGATCGGATGGNCGACG 269
                         ******** *****      ***** ** *********** **  ******* *****

consensus_15335#0      ACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGA 1440
consensus_15335#1      ACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGT 329
                       *********************************************************** 

consensus_15335#0      GGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCG 1500
consensus_15335#1      AGG--------------------------------------------------------- 332
                        *                                                          

consensus_15335#0      GCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACC 1560
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      TATATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAG 1620
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      ATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTA 1680
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      GTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATACTA 1740
consensus_15335#1      ------------------------------------------------------------
                                                                                   

consensus_15335#0      TTAGATATAAACTATACTAGTAAAAA 1766
consensus_15335#1      --------------------------
                                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)