These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15335#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1766 fasta sequence [GCAAAAGATTTAAACCTTTTTCCTTTACGAAAGACGCATACGCACGCGCACCGCTATGTACATGCACCACGCGTTAATACCCACGTATTCAGAGAGACGGAAACCAACGGCAAATACTTGGTCTCACTAGAATTTAACTTACCTAATTGTTTGATTGAAATTAATGTACTCTTGAATGGATAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCATCTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC-GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG-TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA-GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG-CCGAGCTCCACGATGACGTC-GGGCC-GCACCTCCTCGATCAGCTCCGCGAACACCGC-GCCGGTCGAGCCCCACCC-GCGCGGCCTCGCCGCAG-CCGGGTGCAGC-AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTC-GTACGGGCTCTCCCCGTCG-AACAGCTTGTCG-AGGAGCGTCC-GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC-GTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG-GTGCGCGGCGCGCGGCCGTA-T-GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACCTATATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAGATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTAGTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATACTATTAGATATAAACTATACTAGTAAAAA] [+] EMBL CB654120 [GCAAAAGATTTAAACCTTTTTCCTTTACGAAAGACGCATACGCACGCGCACCGCTATGTACATGCACCACGCGTTAATACCCACGTATTCAGAGAGACGGAAACCAACGGCAAATACTTGGTCTCACTAGAATTTAACTTACCTAATTGTTTGATTGAAATTAATGTACTCTTGAATGGATAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCATCTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAAAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGC ] [-] EMBL AU222982 [ ttttttTGGATAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCATCTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGC ] [-] EMBL AK072714 [ CCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG CCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCGAACACCGC GCCGGTCGAGCCCCACCC GCGCGGCCTCGCCGCAG CCGGGTGCAGC AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTC GTACGGGCTCTCCCCGTCG AACAGCTTGTCG AGGAGCGTCC GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTC ] [-] EMBL AU182397 [ tttttttTACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCG ] [-] EMBL AU181911 [ ttttTACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAANAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGNGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGC ] [-] EMBL AU223116 [ ttttTTTTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGNGGTCGTTNGGCGGCGGTGAAGTAGTCGTGNCCGAACATGACNCCCCCGGGGC ] [-] EMBL AU108456 [ ttttTTTTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATTCACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTC CCGAGTGCGTGGCCCCGCCGGCGA CGAGCTTTTCGCCGGCGAGGAGTCACCGGCCAGTCGCGGCGGA CGGCGGCTTCGGGGANAGGAC ] [+] EMBL CB645774 [ GTGTATGAATTTGGT CCCTTTAACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGC ] [-] EMBL CF325906 [ GTATAAATTCCCAGTCCAAAGTAGAAGACCCAAATTCTTGAATTGATTCTTGTGTAAGAATGAAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCCCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGAAGTCACCGCCC GTCCCGGCGAACCGCCGGTTT ] [+] EMBL AK111425 [ GAGCTTTGAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACGTCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGCC GTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGGTGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCG TCGGCGGCGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGTTGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGTAGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCACCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG CCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCGAACACCGC GCCGGTCGAGCCCCACCC GCGCGGCCTCGCCGCAG CCGGGTGCAGC AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTC GTACGGGCTCTCCCCGTCG AACAGCTTGTCG AGGAGCGTCC GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGAGCGCGGGCAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACCTATATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAGATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTAGTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATAC ] [+] EMBL OSS14437A [ nctacGCAGCA GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAG GGTCGCGGAACG CGNCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGGNCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG NCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCGAACACCGC GTCGGTCGAGCCCCACCC GCGCGGNCTCG CGAAGCCCGGGTGCAAC AGCGCGGCGGTGTGCGGCGNCGTGAAGt ] [+] EMBL OSS15125A [ natgaCAGCACGCNCATCGCCGTGGCGCGGC GCGGGACGTCGCGGCGGAAG GGTCGCGGAACG CGGCCAGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCAAGAGGTTCTTGGACACGGCCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCG CCGAGCTCCACGATGACGTC GGGCC GCACCTCCTCGATCAGCTCCGCNAACACCGC GCCGGTCGAGCCCCACCC GCGCGGCCTCGCCG AG CCGGGTGCAGC AGCGCGGCGGTNTNCGGCGGCGGGAAGCTCTC GTACGGGCTCTTCCCGTCG AACAGCTTTTNG AGGAGCGTCC ] [-] EMBL AU222975 [ CAGCGCNGACGCGCCCAGGAAGGCGCCCGAGCTCCACGATGACGTCAGGGCCTGCACCTCCTCGATCAGCTCCGCGAACACCGCTGCCGGTCGAGCCCCACCCTGCGCGGCCTCGCCGCAG CCGGGTGCAGC AGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTCAGTACGGGCTCTCCCCGTCG AACAGCTTGTCG AGGAGCGTCCAGCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATCAGTGCGGCGG ] [-] EMBL OSS13164A [ CGATCA CTNC CGAACA CNC GCCGGTC AACCCCACCC NC CGGCCTCGCCGAAN CC GGTTCAACAACCCCGGCGTTGT CGGCGCCGGNAAGCTCTC GTAC GGCTCTCCNCGTCG AACAGCTTGTCG AGGAACGTCC GCACGACGGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGNCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAGNGTGC CGGCGCGCGGCCGTANT GNAC NCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGAT ] [-] EMBL OSS13765A [ nGGCCTCGCCG AA CC GGTTCAAC AACCCGGC GTTTTCGGCNGCGGGAAACTCTC NTACGGGCTCTCCCCGTCGAAANATCTTGTCGAAGGATCGTCC GCACGACGGCGTCGCTGGTTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGACCGCGGGTAGTTCGCCNTCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGCCGGTGCCGGAGAG GTNC CGCCGCGCGGCCGTA TGGACC TCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTT ] [-] EMBL OSS3979A [ C GTACGGNTTCTCCCCGTCG AACAGCTTGTCG AGGANCGTCC GCACGACGCCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATC GTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCNCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTNC CGGCGCGCGGCCGTA TNGNAC CTGCGACGGCTTGCTNGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAANACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTT ] [-] EMBL AU222981 [ ACTCCTCCCTGAACCGGAACAGATC GTNCGNCGGCGAGCGCGGGTAGTTCGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGG ] [-] EMBL CB645773 [ GCGCGGGTAGTTAGCCGCCGCCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAG GTGCGCGGCGCGCGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTACGGGATCA ] [+] EMBL AU174075 [ CGGCCGTA T GACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCGGCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACC TATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAGATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTAGTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATACTATTAGATATAAACTATACTAGTAAAAA] [-] EMBL OSS3840A [ tatggancCTGCGACGNCTTGCTCGCAGGCGGNCGGATGGACGACGACATGATGCCAACCGAGTACCCGGCGGAGAANACGATCAGGAACACGGTGAGCCGGGTGAGGTGCGGNCGGAGCCTCGCCGGAACGCCGNCGGAAGNCGCCGNCGCCGGAGACGGACNCGNCTTCATGATCACTT ] consensusID : consensus_15335#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 332 fasta sequence [CCGGCGCTGTCGGCGGCGGAACTCTCGTACGGCTCTCCACGTCGAACAACTTGTCGAGGACGTCGCACACGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATCGTTCGACGTCGAGCGCGGGTAGTTCGCCGNCGACGCAGCGCTGNCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGNCGGAGAGGTCCGGCGCGCGGGCGTATTGNACCTGCGTCGNCTTGCTCGCAGTCGATCGGATGGNCGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGTAGG] [-] EMBL OSS12040A [CCGGCGCTGTCGGCGGCGGAACTCTCGTACGGCTCTCCACGTCGAACAACTTGTCGAGGACGTCGCACACGCGTCGCTGGGTATCGCCTCGCCACACTCCTCCCTGAACCGGAACAGATCGTTCGACGTCGAGCGCGGGTAGTTCGCCGNCGACGCAGCGCTGNCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGNCGGAGAGGTCCGGCGCGCGGGCGTATTGNACCTGCGTCGNCTTGCTCGCAGTCGATCGGATGGNCGACGACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGTAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15335#0 GCAAAAGATTTAAACCTTTTTCCTTTACGAAAGACGCATACGCACGCGCACCGCTATGTA 60 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CATGCACCACGCGTTAATACCCACGTATTCAGAGAGACGGAAACCAACGGCAAATACTTG 120 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 GTCTCACTAGAATTTAACTTACCTAATTGTTTGATTGAAATTAATGTACTCTTGAATGGA 180 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 TAAATTAGGTAGTTATAAACAAAAAAAATGAAACAAGTAATACCGACAAGAACATGTCAT 240 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CTGCTCACCTGAATACATTGTAGTACGTATGATCTCGTGTGTATGAATTTGGTATAAATT 300 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CACAGTACAAAGTAGAAGAACCAAATTCTTGAATTGATTCTTGTGTAAGAATGGAGCTTT 360 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 GAAAAAAGGGTGGTGGTTGGGAGTTTTTGAGACGAACACGTGTCGGGCGCCGACGTCACG 420 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 TCGCCGAGTGCGTGGCCCCGCCGGCGACGGCGAGCTTTTCGCCGGCGAGGAGTCACCGGC 480 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CGTCGCGGCGGAGCGGCGGCTTCGGGGAGAGGACCCAGTGCTGGCCGTGCGGCCGGACGG 540 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 TGAGGCCCTTCACCCTGGCGAACAGCGTCACGGCTCGCCGGACGCCGCGGTCGTCGGCGG 600 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CGGTGAAGTAGTCGTGGCCGAACATGACGCCGCCGGGGCGGAGCACGGCCCAGGCGAGGT 660 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 TGATGTCCGCCCACGCCGAGTGGAAGTCGTGGCCGGCGTCCACCTCGATGAGGTCGGCGT 720 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 AGACGCCCCAGTGGCAGAGCGCGGCGAGCGCGGACGCCGTCGAGAAGGGGAGCGGGAGCA 780 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CCCGCGCCGTCGCGTCGGCGCCCGCCGCGGCCACGTTCGACATGAACTGCGGCAGCAGCA 840 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 GCGCATCGCCGTGGCGCGGCGGCGGGACGTCGCGGCGGAAGCGGTCGCGGAACGCCGGCC 900 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 AGCCGCGGAAGTCGTCGACGCAGAGGATGGCCGGGGACAGCGAGAGGTTCTTGGACACGG 960 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CCGCCATGTGCAGCGCCGACGCGCCCAGGAAGGCGCCGAGCTCCACGATGACGTCGGGCC 1020 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 GCACCTCCTCGATCAGCTCCGCGAACACCGCGCCGGTCGAGCCCCACCCGCGCGGCCTCG 1080 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 CCGCAGCCGGGTGCAGCAGCGCGGCGGTGTGCGGCGGCGGGAAGCTCTCGTACGGGCTCT 1140 consensus_15335#1 --------------------CCGGCGCTGT-CGGCGGCGG--AACTCTCGTACGG-CTCT 36 ***** *** ********* * *********** **** consensus_15335#0 CCCCGTCGAACAGCTTGTCGAGGAGCGTCCGCACGACGGCGTCGCTGGGTATCGCCTCGC 1200 consensus_15335#1 CCACGTCGAACAACTTGTCGAGGA-CGTC-GCACAC--GCGTCGCTGGGTATCGCCTCGC 92 ** ********* *********** **** **** ********************** consensus_15335#0 CACACTCCTCCCTGAACCGGAACAGATCGTGCGGCGGCGAGCGCGGGTAGTTCGCCGCCG 1260 consensus_15335#1 CACACTCCTCCCTGAACCGGAACAGATCGTTCGACGTCGAGCGCGGGTAGTTCGCCGNCG 152 ****************************** ** ** ******************** ** consensus_15335#0 CCGCAGCGCTGCCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGCCGGAGAGGTGCG 1320 consensus_15335#1 ACGCAGCGCTGNCGTTGCTCGCCGGGACATCCGTGGAGGAGGCGGTGNCGGAGAGGTCCG 212 ********** *********************************** ********* ** consensus_15335#0 CGGCGCGCGGCCGTATGACCGTCTGCGACGGCTTGCTCGCAGGCGGCCGGATGGACGACG 1380 consensus_15335#1 --GCGCGCGGGCGTATTGN-ACCTGCGTCGNCTTGCTCGCAGTCGATCGGATGGNCGACG 269 ******** ***** ***** ** *********** ** ******* ***** consensus_15335#0 ACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGA 1440 consensus_15335#1 ACATGATGCCAACCGAGTACCCGGCGGAGAAGACGATCAGGAACACGGTGAGCCGGGTGT 329 *********************************************************** consensus_15335#0 GGTGCGGCCGGAGCCTCGCCGGAACGCCGCCGGAAGACGCCGCCGCCGGAGACGGACGCG 1500 consensus_15335#1 AGG--------------------------------------------------------- 332 * consensus_15335#0 GCTTCATGATCACTTCGCAACAAGACTCTCTCTGCTCTCCCTGTAGTCTCTTAGCTAACC 1560 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 TATATATATATATCTCATTTATTCTTTGGAGATTAGTTTAAACCTAGAATTTCTTTCAAG 1620 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 ATTGGATAGCATATATGCTTGCAGATAGAGTGATAGAGAAGGGAGAGGGATTCAGGATTA 1680 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 GTAGTAGTGGTTGTTACTTTATTACATGAAGTTTGTTTTCTTTAGAGAAGATATATACTA 1740 consensus_15335#1 ------------------------------------------------------------ consensus_15335#0 TTAGATATAAACTATACTAGTAAAAA 1766 consensus_15335#1 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||